VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Mon Dec 19 2005 - 17:21:51 CST

Hi,
  I've implemented a new 'measure rmsf' command in a test version of
VMD 1.8.4. If you're interested in trying it out, send me an email
and let me know what platform you're running VMD on.

Thanks,
  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Dec 15, 2005 at 07:10:28AM +0800, h9826299_at_hkusua.hku.hk wrote:
> Hi,
>
> Anybody know how to calculate rmsf (NOT rmsd) using tcl scripts in VMD? Or is
> there anyways to modify the commonly used rmsd scripts to calculate rmsf?
>
> for example, the rmsd_residue_over_time tcl script at
>
> http://www.ks.uiuc.edu/Training/Tutorials/vmd/vmd-tutorial-files/rmsd-fullthrottle.tcl
>
> Thank you very much!!!!
>
> cheers,
> Chung
>
> 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078