VMD-L Mailing List
From: Q=96zer_Duman?= (ozer.duman_at_gmail.com)
Date: Sat Jan 03 2015 - 10:32:29 CST
- Next message: Norman Geist: "AW: the usage of measure bond"
- Previous message: Sunyeping: "show water around a residue for all the frames of the MD trajectory"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]
Hi,
I used to use VMD without a problem on my Mac (late 2013 MBPr with
Yosemite), then suddenly the display in OpenGL display panel disappeared. I
get the "Unable to simultaneously satisfy constraints" error. When I load a
molecule, the program behaves as the molecule is loaded, however there is
no display in the screen.
I tried a few things with no avail. I would appreciate any help. Thanks in
advance. Here is the full report:
Info) VMD for MACOSXX86, version 1.9.2 (December 29, 2014)
Info) http://www.ks.uiuc.edu/Research/vmd/
Info) Email questions and bug reports to vmd_at_ks.uiuc.edu
Info) Please include this reference in published work using VMD:
Info) Humphrey, W., Dalke, A. and Schulten, K., `VMD - Visual
Info) Molecular Dynamics', J. Molec. Graphics 1996, 14.1, 33-38.
Info) -------------------------------------------------------------
Info) Multithreading available, 8 CPUs detected.
Info) OpenGL renderer: Intel Iris Pro OpenGL Engine
Info) Features: STENCIL MDE MTX NPOT PP PS GLSL(OVF)
Info) Full GLSL rendering mode is available.
Info) Textures: 2-D (16384x16384), 3-D (2048x2048x2048), Multitexture (8)
Info) Dynamically loaded 2 plugins in directory:
Info) /Applications/VMD 1.9.2.app/Contents/vmd/plugins/MACOSXX86/molfile
vmd > 2015-01-03 17:09:40.491 VMD[2648:220137] Unable to simultaneously
satisfy constraints:
(
<NSAutoresizingMaskLayoutConstraint:0x7ab960 h=--& v=--&
V:[FI_TBrowserBackgroundView:0x2096d60(0)]>,
<NSAutoresizingMaskLayoutConstraint:0x6da890 h=-&- v=-&-
V:|-(0)-[FI_TListScrollView:0x7bb190] (Names:
'|':FI_TBrowserBackgroundView:0x2096d60 )>,
<NSAutoresizingMaskLayoutConstraint:0x6c7480 h=-&- v=-&-
V:|-(0)-[NSClipView:0x7baf60] (Names: '|':FI_TListScrollView:0x7bb190 )>,
<NSAutoresizingMaskLayoutConstraint:0x6c74c0 h=-&- v=-&-
V:[NSClipView:0x7baf60]-(0)-| (Names: '|':FI_TListScrollView:0x7bb190 )>,
<NSAutoresizingMaskLayoutConstraint:0x6da850 h=-&- v=-&-
V:[FI_TListScrollView:0x7bb190]-(0)-| (Names:
'|':FI_TBrowserBackgroundView:0x2096d60 )>,
<NSAutoresizingMaskLayoutConstraint:0x65dcf0 h=-&- v=-&-
V:[FI_TListView:0x7b76a0]-(17)-| (Names: '|':NSClipView:0x7baf60 )>,
<NSAutoresizingMaskLayoutConstraint:0x65dcb0 h=-&- v=-&-
V:|-(0)-[FI_TListView:0x7b76a0] (Names: '|':NSClipView:0x7baf60 )>
)
Will attempt to recover by breaking constraint
<NSAutoresizingMaskLayoutConstraint:0x65dcf0 h=-&- v=-&-
V:[FI_TListView:0x7b76a0]-(17)-| (Names: '|':NSClipView:0x7baf60 )>
Set the NSUserDefault
NSConstraintBasedLayoutVisualizeMutuallyExclusiveConstraints to YES to have
-[NSWindow visualizeConstraints:] automatically called when this happens.
And/or, break on objc_exception_throw to catch this in the debugger.
Info) Using plugin xyz for structure file
/Users/melampyge/Documents/Research/Cell Motility/OneCell/Base/cell.xyz
Info) Using plugin xyz for coordinates from file
/Users/melampyge/Documents/Research/Cell Motility/OneCell/Base/cell.xyz
Info) Determining bond structure from distance search ...
Info) Analyzing structure ...
Info) Atoms: 50
Info) Bonds: 100
Info) Angles: 0 Dihedrals: 0 Impropers: 0 Cross-terms: 0
Info) Bondtypes: 0 Angletypes: 0 Dihedraltypes: 0 Impropertypes: 0
Info) Residues: 1
Info) Waters: 0
Info) Segments: 1
Info) Fragments: 1 Protein: 0 Nucleic: 0
Info) Coordinate I/O rate 53.1 frames/sec, 0 MB/sec, 18.1 sec
- Next message: Norman Geist: "AW: the usage of measure bond"
- Previous message: Sunyeping: "show water around a residue for all the frames of the MD trajectory"
- Messages sorted by: [ date ] [ thread ] [ subject ] [ author ] [ attachment ]