VMD-L Mailing List

From: John Stone (johns_at_ks.uiuc.edu)
Date: Thu Jun 22 2006 - 14:36:46 CDT

Margaret,
  You need to move or rename the old rmsdtt.tcl in your VMD installation and
copy the new one in place of the old one. The location is generally (from
the installation directory):
  vmd/plugins/noarch/tcl/rmsdtt2.0

Once the new one is in place, you won't need to source it etc, it'll
be what shows up in the menus.

  John Stone
  vmd_at_ks.uiuc.edu

On Thu, Jun 22, 2006 at 03:31:01PM -0400, Margaret Shun Cheung wrote:
>
> Dear John,
> Thank you very much for the file. I wonder how to implement this plugin to
> my vmd program. I go "Extension"-> "Tkconsole"
>
> In the console, I entered "source rmsdtt.tcl".
>
> Then I went back to RMSDTrajectory Tool console, and hit RMSD with
> "average". Error showed:
>
> "Error: invalid command name ".rmsdtt.top.left.swap.0".
>
> Please help.
> THank you very much.
> Sincerely,
> Margaret
>
>
>
>
> On Thu, 22 Jun 2006, John Stone wrote:
>
> >
> >Margaret,
> > I think Luis updated the RMSDTT tool to fix this problem after
> >the release of VMD 1.8.4. I've attached the current version of the
> >plugin so that you can try copying it in place of the one
> >installed on your system if you like.
> >
> > John Stone
> > vmd_at_ks.uiuc.edu
> >
> >On Thu, Jun 22, 2006 at 12:28:10PM -0400, Margaret Shun Cheung wrote:
> >>Dear VMD wizards,
> >>
> >>As I enjoyed the new and cool feature of RMSD Trajectory Tool from
> >>VMD1.84 version, I found that if I clicked on "average" to compute RMSD
> >>then an error message showed up as "Error: measure avpos: invalid syntax,
> >>no such keywork: 0". However, when I clicked on "Top" then it worked just
> >>fine.
> >>In my upper left selection box, I enterred "all" with no Backbone, no
> >>Trace and no Noh selected.
> >>Please help. Thank you very much.
> >>Sincerely,
> >>Margaret S. Cheung,
> >>Ph. D. Postdoctoral Fellow,
> >>
> >>------------------------------------------------------------
> >>Change of Room Number to:
> >>
> >>Room 2112 Tel: (301) 405-9307
> >>Inst. for Phys. Sci. & Tech. Fax: (301) 314-9404
> >>University of Maryland http://glue.umd.edu/~mscheung
> >>College Park, MD 20742-2431 email: mscheung_at_ipst.umd.edu
> >>------------------------------------------------------------
> >
> >--
> >NIH Resource for Macromolecular Modeling and Bioinformatics
> >Beckman Institute for Advanced Science and Technology
> >University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
> >Email: johns_at_ks.uiuc.edu Phone: 217-244-3349
> > WWW: http://www.ks.uiuc.edu/~johns/ Fax: 217-244-6078
> >
>
> Margaret S. Cheung,
> Ph. D. Postdoctoral Fellow,
>
> ------------------------------------------------------------
> Change of Room Number to:
>
> Room 2112 Tel: (301) 405-9307
> Inst. for Phys. Sci. & Tech. Fax: (301) 314-9404
> University of Maryland http://glue.umd.edu/~mscheung
> College Park, MD 20742-2431 email: mscheung_at_ipst.umd.edu
> ------------------------------------------------------------ 

-- 
NIH Resource for Macromolecular Modeling and Bioinformatics
Beckman Institute for Advanced Science and Technology
University of Illinois, 405 N. Mathews Ave, Urbana, IL 61801
Email: johns_at_ks.uiuc.edu                 Phone: 217-244-3349
  WWW: http://www.ks.uiuc.edu/~johns/      Fax: 217-244-6078