VMD-L Mailing List

From: Peter Freddolino (petefred_at_ks.uiuc.edu)
Date: Thu Aug 28 2008 - 17:27:44 CDT

Easy way: use voidoo (http://xray.bmc.uu.se/usf/voidoo.html)
Hard way: Use the vmd volmap utility or a surface generation algorithm
to map out your cavity and then calculate a volume based on those results.
Best,
Peter

ben rodriguez wrote:
> Hi,
> I am trying to calculate the volume inside the pocket of my protein.
> Is there a simple(or otherwise) way do do this from a single structure?
>
> Ben Rodriguez
>
> ------------------------------------------------------------------------
> Be the filmmaker you always wanted to be—learn how to burn a DVD with
> Windows®. Make your smash hit
> <http://clk.atdmt.com/MRT/go/108588797/direct/01/>