From: Miller, Patrick (
Date: Mon Oct 09 2006 - 11:19:54 CDT

I'm working on a trajectory file plugin and want to get access
to bond information (this file has no structure data in it).
The idea is that I would load a molecule from PDB and/or PSF
files and have the bonds computed in the normal way before reading
trajectory information. So, inside my plugin....

static int read_next_timestep(void* handle, int natoms,
molfile_timestep* info) {
  /* How do I get the current pairlist of bonds? */

I want to correct raw atom positions to account for the periodic

Thanks for any pointers,