Main Page Namespace List Class Hierarchy Alphabetical List Compound List File List Namespace Members Compound Members File Members Related Pages
VMD (current) File Members
_ | a | b | c | d | e | f | g | h | i | j | k | l | m | n | o | p | q | r | s | t | u | v | w | x | y | z
Here is a list of all file members with links to the files they belong to:- _ -
- a -
- aa_cb()
: MainFltkMenu.C
- abAppend()
: linenoise.c
- abFree()
: linenoise.c
- abInit()
: linenoise.c
- ABS
: utilities.h
- access_tcl_atomsel()
: TclCommands.C
- access_tcl_atomsel_obj()
: TclCommands.C
- accessions_doc
: py_molecule.C
- accumulate_color()
: OptiXShaders.cu
- accumulation_buffer
: OptiXShaders.cu
- acgridspacing
: CUDAQuickSurf.cu
- acncells
: CUDAQuickSurf.cu
- activate_doc
: py_animate.C
- ACUTOFF
: QuickSurf_AVX2.C, QuickSurf.C, Orbital.C
- ADD
: y.tab.h, AtomParser.C
- add()
: Voltool.h, Voltool.C
- add_callback()
: PythonTextInterp.C
- add_doc
: py_menu.C, py_material.C
- add_link()
: SpatialSearch.C
- add_rep_to_browser()
: GraphicsFltkMenu.C
- add_volumetric_doc
: py_molecule.C
- addangle_doc
: py_topo.C
- addbond_doc
: py_topo.C
- addData()
: CUDAMeasureRDF.cu
- adddihed_doc
: py_topo.C
- addimproper_doc
: py_topo.C
- addmacro_doc
: py_selection.C
- addrep_doc
: py_molrep.C
- aexpfnx()
: Orbital.C
- affinitize_threads()
: VMDApp.C
- align_plane_with_axis()
: MeasureSymmetry.C
- allmacro_doc
: py_selection.C
- alloc_aligned_ptr()
: Timestep.C
- ALLOC_ALIGNMASK
: VMDDisplayList.C
- ALLOC_ALIGNMENT
: VMDDisplayList.C
- alloc_cuda_array()
: CUDAGaussianBlur.h, CUDAGaussianBlur.cu
- alos()
: hash.c
- alos_int()
: inthash.c
- analyze_selection_aligned()
: utilities.h, util_simd.C
- analyze_selection_aligned_avx()
: util_simd.C
- analyze_selection_aligned_avx2()
: util_simd.C
- analyze_selection_aligned_dispatch()
: utilities.h, util_simd.C
- AND
: y.tab.h, AtomParser.C
- angle()
: utilities.h, utilities.C
- angle_doc
: py_topo.C, py_measure.C
- ANGLEGEOMCOL
: GeometryList.C
- ANGMOM_X
: QMTimestep.C
- ANGMOM_Y
: QMTimestep.C
- ANGMOM_Z
: QMTimestep.C
- ANGS_TO_BOHR
: QMData.h, OrbitalJIT.C, Orbital.C, CUDAOrbital.cu
- animate_moddoc
: py_animate.C
- animationDirName
: Animation.h, Animation.C
- animationStyleName
: Animation.h, Animation.C
- anterpolation()
: msmpot_cubic.c
- any_hit_clip_sphere()
: OptiXShaders.cu
- any_hit_opaque()
: OptiXShaders.cu
- any_hit_transmission()
: OptiXShaders.cu
- AO_off
: OptiXShaders.cu
- AO_on
: OptiXShaders.cu
- aoambient_cb()
: DisplayFltkMenu.C
- aodirect_cb()
: DisplayFltkMenu.C
- aomode_cb()
: DisplayFltkMenu.C
- arcdistance()
: utilities.h, utilities.C
- arm_sve_vecsize_32bits()
: util_simd_SVE.C
- arm_sve_vecsize_64bits()
: util_simd_SVE.C
- AS
: y.tab.h, AtomParser.C
- as_constcharptr()
: py_commands.h, py_commands.C
- as_int()
: py_commands.h, py_commands.C
- as_pyint()
: py_commands.h, py_commands.C
- as_pystring()
: py_commands.h, py_commands.C
- assemble_cluster()
: MeasureCluster.C
- ASSERT
: msmpot_internal.h
- assign_atoms()
: MeasureSymmetry.C
- assign_float_to_dest()
: GaussianBlur.C
- AT_LEAST
: TclGraphics.C
- atexit_registered
: linenoise.c
- atom_bin_stats()
: VolMapCreateILS.C
- atom_displ_from_mean_plane()
: DrawRingsUtils.h, DrawRingsUtils.C
- ATOM_Q
: msmpot_internal.h
- ATOM_SIZE
: msmpot_internal.h
- ATOM_X
: msmpot_internal.h
- ATOM_Y
: msmpot_internal.h
- ATOM_Z
: msmpot_internal.h
- AtomColorMenuName
: AtomColor.h, AtomColor.C
- AtomColorName
: AtomColor.h, AtomColor.C
- ATOMGEOMCOL
: GeometryList.C
- ATOMHYDROGEN
: Atom.h
- atominfo
: CUDAVolCPotential.cu
- atomlist
: SpatialSearch.C
- ATOMNORMAL
: Atom.h
- ATOMNUCLEICBACK
: Atom.h
- atomparser_node
: AtomParser.h
- atomparser_result
: AtomParser.h, AtomParser.C
- atomparser_string
: AtomParser.h
- atomparser_stringtype
: AtomParser.h
- atomparser_symbols
: AtomParser.h, AtomLexer.C
- atomparser_yylookup()
: AtomParser.h
- atomparser_yystring
: AtomParser.h
- ATOMPROTEINBACK
: Atom.h
- AtomRepInfo
: AtomRep.h, AtomRep.C
- atoms
: colvarscript_commands_colvar.h
- atomsel_all()
: AtomSel.C
- atomsel_AsAtomSel()
: py_commands.h, py_atomsel.C
- atomsel_backbonetype()
: AtomSel.C
- atomsel_Check()
: py_atomsel.C
- atomsel_custom_singleword()
: AtomSel.h
- atomsel_dealloc()
: py_atomsel.C
- atomsel_default_weights()
: TclMeasure.C, TclCommands.h
- Atomsel_Delete()
: TclCommands.C
- atomsel_doc
: py_atomsel.C
- atomsel_get()
: py_atomsel.C
- atomsel_get_vel
: AtomSel.C
- atomsel_getattro()
: py_atomsel.C
- atomsel_getset
: py_atomsel.C
- atomsel_gridindex0()
: AtomSel.C
- atomsel_gridindex1()
: AtomSel.C
- atomsel_gridindex2()
: AtomSel.C
- atomsel_gridindex3()
: AtomSel.C
- atomsel_gridindex4()
: AtomSel.C
- atomsel_gridindex5()
: AtomSel.C
- atomsel_gridindex6()
: AtomSel.C
- atomsel_gridindex7()
: AtomSel.C
- atomsel_gridindex_array()
: AtomSel.C
- Atomsel_Init()
: TclCommands.h, TclCommands.C
- atomsel_interp_volume0()
: AtomSel.C
- atomsel_interp_volume1()
: AtomSel.C
- atomsel_interp_volume2()
: AtomSel.C
- atomsel_interp_volume3()
: AtomSel.C
- atomsel_interp_volume4()
: AtomSel.C
- atomsel_interp_volume5()
: AtomSel.C
- atomsel_interp_volume6()
: AtomSel.C
- atomsel_interp_volume7()
: AtomSel.C
- atomsel_interp_volume_array()
: AtomSel.C
- atomsel_iter()
: py_atomsel.C
- atomsel_mapping
: py_atomsel.C
- atomsel_name()
: AtomSel.C
- atomsel_new()
: py_atomsel.C
- atomsel_none()
: AtomSel.C
- atomsel_repr()
: py_atomsel.C
- atomsel_residuetype()
: AtomSel.C
- atomsel_set()
: TclCommands.C, py_atomsel.C
- ATOMSEL_SET_BAD_DATA
: TclCommands.C
- ATOMSEL_SET_BADDATA2
: TclCommands.C
- atomsel_setattro()
: py_atomsel.C
- atomsel_str()
: py_atomsel.C
- atomsel_type()
: AtomSel.C
- Atomsel_Type
: py_commands.h, py_atomsel.C
- atomsel_volume0()
: AtomSel.C
- atomsel_volume1()
: AtomSel.C
- atomsel_volume2()
: AtomSel.C
- atomsel_volume3()
: AtomSel.C
- atomsel_volume4()
: AtomSel.C
- atomsel_volume5()
: AtomSel.C
- atomsel_volume6()
: AtomSel.C
- atomsel_volume7()
: AtomSel.C
- atomsel_volume_array()
: AtomSel.C
- atomselect_doc
: py_numeric.C
- atomselect_move()
: TclCommands.C
- atomselect_moveby()
: TclCommands.C
- atomselection_length()
: py_atomsel.C
- atomselection_methods
: py_atomsel.C
- atomselection_subscript()
: py_atomsel.C
- atomSelParser_init()
: AtomSel.h, AtomSel.C
- atypes_doc
: py_topo.C
- autoupdate_cb()
: GraphicsFltkMenu.C
- autoupdate_doc
: py_molrep.C
- average()
: Voltool.h, Voltool.C
- axes_cb()
: MainFltkMenu.C
- axes_moddoc
: py_axes.C
- AXESCAPRAD
: Axes.C
- axesloc
: Axes.C
- AXESOCOL
: Axes.C
- AXESRAD
: Axes.C
- AXESRES
: Axes.C
- AXESRODLEN
: Axes.C
- AXESSPHRES
: Axes.C
- AXESTCOL
: Axes.C
- AXESTXTLEN
: Axes.C
- AXESXCOL
: Axes.C
- AXESYCOL
: Axes.C
- AXESZCOL
: Axes.C
- Axis
: MeasureSymmetry.h
- b -
- backgroundmode_cb()
: MainFltkMenu.C
- BACKSPACE
: linenoise.c
- BASE_DISPLAYLIST_SIZE
: VMDDisplayList.C
- basis_change()
: MeasurePBC.C
- BDIMXY
: msmpot_cuda_shortrng.cu
- BEGIN
: AtomLexer.C
- beginCmdFile
: vmd.C
- BEGMAP
: Scene.h
- BEGREGCLRS
: Scene.h
- behind_plane()
: MeasureSymmetry.C
- BETASCALE
: DrawMolItem.C
- bias
: colvarscript_commands_bias.h
- bin()
: colvarscript_commands_bias.h
- BIN_DEPTH
: VolMapCreateILS.C, CUDAVolMapCreateILS.cu
- bin_evaluation()
: msmpot_compute.c
- BIN_OVERFLOW_LIMIT
: CUDAMeasureRDF.cu
- BIN_SHIFT
: CUDAVolMapCreateILS.cu
- BIN_SIZE
: VolMapCreateILS.C, CUDAVolMapCreateILS.cu
- BIN_SLOTSHIFT
: CUDAVolMapCreateILS.cu
- BIN_SLOTSIZE
: VolMapCreateILS.C, CUDAVolMapCreateILS.cu
- binomial()
: QMData.C
- BLOCK_DIM_X
: msmpot_cuda_shortrng.cu
- BLOCK_DIM_Y
: msmpot_cuda_shortrng.cu
- BLOCK_DIM_Z
: msmpot_cuda_shortrng.cu
- block_sum_reduction()
: CUDAMeasureQCP.cu
- BLOCK_X_DIM
: CUDAWatershed.cu
- BLOCK_Y_DIM
: CUDAWatershed.cu
- BLOCK_Z_DIM
: CUDAWatershed.cu
- BLOCKDIM_X
: CUDAGaussianBlur.cu
- BLOCKDIM_Y
: CUDAGaussianBlur.cu
- BLOCKDIM_Z
: CUDAGaussianBlur.cu
- BLOCKSIZE
: OrbitalJIT.C, OpenCLVolCPotential.C, OpenCLOrbital.C, CUDAVolCPotential.cu, CUDAOrbital.cu
- BLOCKSIZEX
: OrbitalJIT.C, OpenCLVolCPotential.C, OpenCLOrbital.C, CUDAVolCPotential.cu, CUDAOrbital.cu, CUDABench.cu
- BLOCKSIZEY
: OrbitalJIT.C, OpenCLVolCPotential.C, OpenCLOrbital.C, CUDAVolCPotential.cu, CUDAOrbital.cu
- Bond
: MeasureSymmetry.h
- bond_doc
: py_topo.C, py_measure.C
- BONDGEOMCOL
: GeometryList.C
- Bondlist
: MeasureSymmetry.h
- bonds_doc
: py_atomsel.C
- bondsearchthread()
: BondSearch.C
- BONDSUMTOL
: MeasureSymmetry.C
- BOOL
: pcreinternal.h
- BRASTACK_SIZE
: pcre.c
- breakup_filename()
: utilities.h, utilities.C
- browserpopup_menu_behavior
: MainFltkMenu.C
- BSHIFT
: CUDAVolMapCreateILS.cu
- btypes_doc
: py_topo.C
- build_set_values()
: py_atomsel.C
- build_xyzr_from_coords()
: CUDAMDFF.cu
- build_xyzr_from_sel()
: CUDAMDFF.cu
- button_cb()
: ToolFltkMenu.C
- BWITER
: CUDABench.cu
- c -
- C1
: Orbital.C
- C2
: Orbital.C
- c_compiler_std()
: c_compiler.h, c_compiler.c
- c_ddfunc
: SymbolTable.h
- cacheNameStr
: DisplayDevice.C
- calc_ac_cell_ids()
: CUDAMDFF.cu
- calc_cc()
: TclVoltool.C, CUDAMDFF.cu
- calc_densities()
: CUDAMDFF.cu
- calc_density_bounds()
: CUDAMDFF.cu
- calc_density_bounds_overlapping_map()
: CUDAMDFF.cu
- calc_ffworld_normal()
: OptiXShaders.cu
- calc_neighbors_kernel()
: CUDAWatershed.cu
- calcGridPos()
: CUDAMarchingCubes.cu
- calculate_angle()
: Measure.h, Measure.C
- calculate_bond()
: Measure.h, Measure.C
- calculate_dihed()
: Measure.h, Measure.C
- calculate_histogram()
: CUDAMeasureRDF.cu
- calculate_histogram_block()
: CUDAMeasureRDF.cu
- CALCULATE_NEIGHBORS
: Watershed.C
- CALCULATE_NEIGHBORS_CUDA
: CUDAWatershed.cu
- calculate_rdf()
: CUDAMeasureRDF.cu
- call_callbacks()
: PythonTextInterp.C
- CallbackMethods
: PythonTextInterp.C
- case_compare_numeric_macro
: ParseTree.C
- case_compare_string_macro
: ParseTree.C
- CAST_HACK
: py_commands.h
- categories_doc
: py_color.C
- cave_gl_init_fn()
: CaveRoutines.h, CaveRoutines.C
- cave_renderer()
: CaveRoutines.h, CaveRoutines.C
- cavedisplay
: CaveRoutines.C
- CAVEMAGICINIT
: CaveRoutines.C
- cavescene
: CaveRoutines.C
- caveStereoNameStr
: CaveDisplayDevice.C
- CAVEUSERWLOCK
: CaveScene.C
- cb_cb()
: MainFltkMenu.C
- cbdata
: MainFltkMenu.C
- cbdict
: PythonTextInterp.C
- cbit_digit
: pcreinternal.h
- cbit_length
: pcreinternal.h
- cbit_space
: pcreinternal.h
- cbit_word
: pcreinternal.h
- cbits_offset
: pcreinternal.h
- cc
: MDFF.C
- cc_sumreduction()
: CUDAMDFF.cu
- cc_threaded()
: MDFF.h, MDFF.C
- ccparms
: MDFF.C
- cellStartEnd
: CUDAQuickSurf.cu
- cenergy()
: CUDAVolCPotential.cu
- center()
: py_atomsel.C
- center_convert_single_soa()
: MeasureQCP.C
- center_convert_soa()
: MeasureQCP.C
- center_doc
: py_trans.C, py_atomsel.C
- center_of_mass()
: Measure.C
- centerperres_doc
: py_atomsel.C
- centerperresidue()
: py_atomsel.C
- cephesfastexpf()
: Orbital.C
- CET_C2_data
: ColorScaleTables.h
- CET_C4_data
: ColorScaleTables.h
- CET_C6_data
: ColorScaleTables.h
- CET_C7_data
: ColorScaleTables.h
- CET_D11_data
: ColorScaleTables.h
- CET_D12_data
: ColorScaleTables.h
- CET_I1_data
: ColorScaleTables.h
- CET_I2_data
: ColorScaleTables.h
- CET_I3_data
: ColorScaleTables.h
- CET_L16_data
: ColorScaleTables.h
- CET_L17_data
: ColorScaleTables.h
- CET_L18_data
: ColorScaleTables.h
- CET_L19_data
: ColorScaleTables.h
- CET_L20_data
: ColorScaleTables.h
- CET_L3_data
: ColorScaleTables.h
- CET_L8_data
: ColorScaleTables.h
- CET_L9_data
: ColorScaleTables.h
- CET_R2_data
: ColorScaleTables.h
- change_doc
: py_material.C
- changes_d
: CUDAWatershed.cu
- CHARTCLASS
: ColorFltkMenu.C
- CHDIR
: colvarbias_meta.C
- check_canonical_form()
: cmd_user.C
- check_escape()
: pcre.c
- check_gpu_compute20()
: CUDAMDFF.cu
- CHECK_MATCH
: TclCommands.C
- check_mol()
: Measure.h, Measure.C
- CHECK_RANGE
: MoleculeGraphics.C
- CHECK_RENDER
: cmd_render.C
- check_timesteps()
: TclFastPBC.C
- checkfileextension()
: SnapshotDisplayDevice.C, LibTachyonDisplayDevice.C, ImageIO.C
- cividis_data
: ColorScaleTables.h
- CKACCUM
: CUDAMDFF.cu
- clamp_color()
: utilities.h
- clamp_int()
: utilities.h
- classifyVoxel()
: CUDAMarchingCubes.cu
- clear_accumulation_buffer()
: OptiXShaders.cu
- clenergysrc
: OpenCLVolCPotential.C
- CLERR
: OpenCLVolCPotential.C, OpenCLOrbital.C
- clip_ray_by_plane()
: OptiXShaders.cu
- CLIP_VIEW_off
: OptiXShaders.cu
- CLIP_VIEW_on
: OptiXShaders.cu
- clorbitalsrc
: OpenCLOrbital.C
- closest_hit_radiance_general()
: OptiXShaders.cu
- cluster_get_fitrmsd()
: MeasureCluster.C
- cluster_get_rgyrd()
: MeasureCluster.C
- cluster_get_rmsd()
: MeasureCluster.C
- cmd_animate_usage()
: cmd_animate.C
- cmd_gettimestep()
: tcl_commands.h, cmd_animate.C
- cmd_mol_list()
: cmd_mol.C
- cmd_mol_usage()
: cmd_mol.C
- cmd_profile_usage()
: cmd_profile.C
- cmd_rawtimestep()
: tcl_commands.h, cmd_animate.C
- cmd_vmdbench_usage()
: cmd_vmdbench.C
- cmdFileUsesPython
: vmd.C
- cmdList
: ToolFltkMenu.C
- collinear()
: VolMapCreateILS.C, MeasureSymmetry.C
- color_doc
: py_molrep.C, py_graphics.C
- color_moddoc
: py_color.C
- ColorMethods
: py_color.C
- colorscale_auto_cb()
: GraphicsFltkMenu.C
- colorscale_minmax_cb()
: GraphicsFltkMenu.C
- colorScaleType
: Scene.C
- colorupdate_cb()
: GraphicsFltkMenu.C
- colScaleMenuNames
: Scene.C
- columns
: GeometryFltkMenu.C
- colvar
: colvarscript_commands_colvar.h
- colvar_obj()
: colvarscript.h
- colvarbias_obj()
: colvarscript.h
- COLVARPROXY_VERSION
: colvarproxy_vmd_version.h
- colvarproxy_vmd_ptr
: colvarproxy_vmd.C
- COLVARS_BUG_ERROR
: colvarmodule.h
- COLVARS_DEBUG
: colvarmodule.h
- COLVARS_ERROR
: colvarmodule.h
- COLVARS_FILE_ERROR
: colvarmodule.h
- COLVARS_INPUT_ERROR
: colvarmodule.h
- COLVARS_MEMORY_ERROR
: colvarmodule.h
- COLVARS_NO_SUCH_FRAME
: colvarmodule.h
- COLVARS_NOT_IMPLEMENTED
: colvarmodule.h
- COLVARS_OK
: colvarscript_commands_colvar.h, colvarscript_commands_bias.h, colvarscript_commands.h, colvarmodule.h
- COLVARS_TCL
: colvarproxy_tcl.h
- COLVARS_VERSION
: colvars_version.h
- colvars_vmd_ptr
: colvarproxy_vmd.C
- COLVARSCRIPT_COMMANDS_GLOBAL
: colvarscript_commands.C
- COLVARSCRIPT_ERROR
: colvarscript.h
- colvarscript_obj()
: colvarscript.h
- COLVARSCRIPT_OK
: colvarscript.h
- com_soa()
: MeasureQCP.C
- combine_arguments()
: utilities.h, utilities.C
- command
: colvarscript_commands_bias.h
- commands
: colvarscript_commands.h
- communicate_forces()
: colvarscript_commands_colvar.h
- compactVoxels()
: CUDAMarchingCubes.cu
- COMPARE
: y.tab.h, AtomParser.C
- compare_atomic_basis()
: QMData.C
- compare_plugin_name()
: FileChooserFltkMenu.C
- compare_shells()
: QMData.C
- compile_branch()
: pcre.c
- compile_data
: pcreinternal.h
- compile_regex()
: pcre.c
- completeLine()
: linenoise.c
- completionCallback
: linenoise.c
- completionCallbackCtx
: linenoise.c
- compoundmapper()
: TclFastPBC.C
- compute_allatoms()
: VolMapCreateILS.C
- compute_angle_energy()
: Measure.h, Measure.C
- compute_bond_energy()
: Measure.h, Measure.C
- compute_dihed_energy()
: Measure.h, Measure.C
- compute_elect_energy()
: Measure.h, Measure.C
- compute_imprp_energy()
: Measure.h, Measure.C
- compute_norm2_stats()
: colvarmodule_utils.h
- compute_occupancy_monoatom()
: VolMapCreateILS.C
- compute_occupancy_multiatom()
: VolMapCreateILS.C
- compute_pbcminmax()
: MeasurePBC.C, Measure.h
- compute_vdw_energy()
: Measure.h, Measure.C
- computefragcenters()
: CUDAFastPBC.cu
- ComputeOccupancyMap
: VolMapCreateILS.C
- ComputeOccupancyMap_calculate_slab()
: VolMapCreateILS.C
- ComputeOccupancyMap_cleanup()
: VolMapCreateILS.C
- ComputeOccupancyMap_setup()
: VolMapCreateILS.C
- computepaddedsize()
: OpenCLOrbital.C, CUDAOrbital.cu
- computeTriangleAreas()
: CUDAMarchingCubes.cu
- cone_doc
: py_graphics.C
- conf
: colvarscript_commands.h
- connect_doc
: py_imd.C
- connected_doc
: py_imd.C
- const_atom_basis
: CUDAOrbital.cu
- const_atompos
: CUDAOrbital.cu
- const_basis_array
: CUDAOrbital.cu
- const_binoffsets
: CUDAVolMapCreateILS.cu
- const_bx_1
: CUDAVolMapCreateILS.cu
- const_by_1
: CUDAVolMapCreateILS.cu
- const_bz_1
: CUDAVolMapCreateILS.cu
- const_conformers
: CUDAVolMapCreateILS.cu
- const_cutoff
: CUDAVolMapCreateILS.cu
- const_excloffsets
: CUDAVolMapCreateILS.cu
- const_extra
: CUDAVolMapCreateILS.cu
- const_hx
: CUDAVolMapCreateILS.cu
- const_hy
: CUDAVolMapCreateILS.cu
- const_hz
: CUDAVolMapCreateILS.cu
- const_inv_numconf
: CUDAVolMapCreateILS.cu
- const_max_energy
: CUDAVolMapCreateILS.cu
- const_min_excldist
: CUDAVolMapCreateILS.cu
- const_min_occupancy
: CUDAVolMapCreateILS.cu
- const_num_binoffsets
: CUDAVolMapCreateILS.cu
- const_num_conformers
: CUDAVolMapCreateILS.cu
- const_num_extras
: CUDAVolMapCreateILS.cu
- const_num_prim_per_shell
: CUDAOrbital.cu
- const_num_probes
: CUDAVolMapCreateILS.cu
- const_num_shells_per_atom
: CUDAOrbital.cu
- const_probevdwparms
: CUDAVolMapCreateILS.cu
- const_shell_types
: CUDAOrbital.cu
- const_vdwparms
: CUDAVolMapCreateILS.cu
- const_wave_f
: CUDAOrbital.cu
- const_x0
: CUDAVolMapCreateILS.cu
- const_y0
: CUDAVolMapCreateILS.cu
- const_z0
: CUDAVolMapCreateILS.cu
- constbuf
: CUDAClearDevice.cu
- contacts()
: py_atomsel.C
- contacts_doc
: py_atomsel.C
- convert_bool()
: py_commands.h, py_commands.C
- convert_color()
: CUDAQuickSurf.cu, CUDAMarchingCubes.cu
- convert_density()
: CUDAQuickSurf.cu, CUDAMDFF.cu
- convert_endpoints_to_matrix()
: VrmlDisplayDevice.C
- convert_normal()
: CUDAMarchingCubes.cu
- convert_type_and_assign_val()
: CUDAGaussianBlur.cu
- convert_type_and_assign_val< float >()
: CUDAGaussianBlur.cu
- convolution_x_kernel()
: CUDAGaussianBlur.cu
- convolution_x_kernel_s()
: CUDAGaussianBlur.cu
- convolution_y_kernel()
: CUDAGaussianBlur.cu
- convolution_y_kernel_s()
: CUDAGaussianBlur.cu
- convolution_z_kernel()
: CUDAGaussianBlur.cu
- convolution_z_kernel_s()
: CUDAGaussianBlur.cu
- copy_and_convert_kernel()
: CUDASegmentation.cu
- copy_and_convert_type_cuda()
: CUDASegmentation.h, CUDASegmentation.cu
- copy_array_from_gpu()
: CUDAGaussianBlur.h, CUDAGaussianBlur.cu
- copy_array_to_gpu()
: CUDAGaussianBlur.h, CUDAGaussianBlur.cu
- copy_atomic_basis()
: QMData.C
- COPY_CONV_INST
: CUDASegmentation.cu
- copy_doc
: py_imd.C
- copy_shell_basis()
: QMData.C
- copyatomstoconstbuf()
: OpenCLVolCPotential.C, CUDAVolCPotential.cu
- copycoordstoconstbuff()
: CUDAMeasureRDF.cu
- correction()
: utilities.h, utilities.C
- correlationthread()
: MDFF.C
- countIsoGrids()
: MeasureVolInterior.h, MeasureVolInterior.C
- CPU_ARM64_AES
: WKFThreads.h
- CPU_ARM64_ASIMD
: WKFThreads.h
- CPU_ARM64_ASIMDDP
: WKFThreads.h
- CPU_ARM64_ASIMDFHM
: WKFThreads.h
- CPU_ARM64_ASIMDHP
: WKFThreads.h
- CPU_ARM64_ASIMDRDM
: WKFThreads.h
- CPU_ARM64_ATOMICS
: WKFThreads.h
- CPU_ARM64_CPUID
: WKFThreads.h
- CPU_ARM64_CRC32
: WKFThreads.h
- CPU_ARM64_FP
: WKFThreads.h
- CPU_ARM64_HPFP
: WKFThreads.h
- CPU_ARM64_SHA1
: WKFThreads.h
- CPU_ARM64_SHA2
: WKFThreads.h
- CPU_ARM64_SHA3
: WKFThreads.h
- CPU_ARM64_SHA512
: WKFThreads.h
- CPU_ARM64_SVE
: WKFThreads.h
- CPU_AVX
: WKFThreads.h
- CPU_AVX2
: WKFThreads.h
- CPU_AVX512CD
: WKFThreads.h
- CPU_AVX512ER
: WKFThreads.h
- CPU_AVX512F
: WKFThreads.h
- CPU_AVX512PF
: WKFThreads.h
- CPU_F16C
: WKFThreads.h
- CPU_FMA
: WKFThreads.h
- CPU_HT
: WKFThreads.h
- CPU_HYPERVISOR
: WKFThreads.h
- CPU_KNL
: WKFThreads.h
- CPU_SMTDEPTH_UNKNOWN
: WKFThreads.h
- CPU_SSE2
: WKFThreads.h
- CPU_SSE4_1
: WKFThreads.h
- CPU_UNKNOWN
: WKFThreads.h
- create_Bspline_basis()
: utilities.h
- create_modified_CR_spline_basis()
: utilities.h
- CreateEmptyGrid()
: MeasureVolInterior.h, MeasureVolInterior.C
- CreateProbGrid()
: MeasureVolInterior.h, MeasureVolInterior.C
- createtool_cb()
: ToolFltkMenu.C
- cremer_pople_params()
: DrawRingsUtils.h, DrawRingsUtils.C
- cremer_pople_ring_color()
: DrawRingsUtils.h, DrawRingsUtils.C
- cross_prod()
: utilities.h, utilities.C
- CROSS_SCALE_FACTOR
: DrawMolItem2.C
- CTRHEIGHT
: GraphicsFltkReps.h
- CTRL_A
: linenoise.c
- CTRL_B
: linenoise.c
- CTRL_C
: linenoise.c
- CTRL_D
: linenoise.c
- CTRL_E
: linenoise.c
- CTRL_F
: linenoise.c
- CTRL_H
: linenoise.c
- CTRL_K
: linenoise.c
- CTRL_L
: linenoise.c
- CTRL_N
: linenoise.c
- CTRL_P
: linenoise.c
- CTRL_T
: linenoise.c
- CTRL_U
: linenoise.c
- CTRL_W
: linenoise.c
- CTRWIDTH
: GraphicsFltkReps.h
- CTRWIDTHSM
: GraphicsFltkReps.h
- ctype_digit
: pcreinternal.h
- ctype_letter
: pcreinternal.h
- ctype_meta
: pcreinternal.h
- ctype_space
: pcreinternal.h
- ctype_word
: pcreinternal.h
- ctype_xdigit
: pcreinternal.h
- ctypes_offset
: pcreinternal.h
- cubic_interp()
: Voltool.h
- cuda_find_energy_exclusions()
: CUDAVolMapCreateILS.cu
- cuda_latcut()
: msmpot_cuda_latcut.cu
- cuda_occupancy_monoatom()
: CUDAVolMapCreateILS.cu
- cuda_occupancy_multiatom()
: CUDAVolMapCreateILS.cu
- cuda_occupancy_thread()
: CUDAVolMapCreateILS.cu
- cuda_shortrange()
: msmpot_cuda_shortrng.cu
- cuda_shortrange_nonperiodic()
: msmpot_cuda_shortrng.cu
- cudabusbw()
: CUDABench.cu
- cudabusbwthread()
: CUDABench.cu
- cudaenergythread()
: CUDAVolCPotential.cu
- cudaglobmembw()
: CUDABench.cu
- cudaglobmembwthread()
: CUDABench.cu
- cudamaddgflops()
: CUDABench.cu
- cudamaddthread()
: CUDABench.cu
- CUDAMARCHINGCUBES_INTERNAL
: CUDAMarchingCubes.cu
- cudaorbitalthread()
: CUDAOrbital.cu
- cuedensity_cb()
: DisplayFltkMenu.C
- cueend_cb()
: DisplayFltkMenu.C
- cuemode_cb()
: DisplayFltkMenu.C
- CUERR
: msmpot_cuda.h, CUDAVolMapCreateILS.cu, CUDAVolCPotential.cu, CUDASpatialSearch.cu, CUDASort.cu, CUDASegmentation.cu, CUDAQuickSurf.cu, CUDAParPrefixOps.cu, CUDAOrbital.cu, CUDAMDFF.cu, CUDAGaussianBlur.cu, CUDAClearDevice.cu, CUDABench.cu
- cuestart_cb()
: DisplayFltkMenu.C
- cuorbitalcachedglobmem()
: CUDAOrbital.cu
- cuorbitalcachedglobmem_packed()
: CUDAOrbital.cu
- cuorbitalcachedglobmem_packed_2x()
: CUDAOrbital.cu
- cuorbitalcachedglobmem_packed_4x()
: CUDAOrbital.cu
- cuorbitalcachedglobmem_packed_4x_3D()
: CUDAOrbital.cu
- cuorbitalconstmem()
: CUDAOrbital.cu
- cuorbitaltiledshared()
: CUDAOrbital.cu
- cupdate_doc
: py_molrep.C
- curframe_cb()
: MainFltkMenu.C
- CURRENTAPIVERSION
: MobileInterface.C
- currentColor
: R3dDisplayDevice.C
- cursorBG
: OpenGLDisplayDevice.C
- cursorFG
: OpenGLDisplayDevice.C
- customArgv
: vmd.C
- cvm
: colvarmodule.h
- CVSCRIPT
: colvarscript_commands_colvar.h, colvarscript_commands_bias.h, colvarscript_commands.h, colvarscript_commands_colvar.C, colvarscript_commands_bias.C, colvarscript_commands.h, colvarscript_commands.C, colvarscript.h, colvarscript.C
- CVSCRIPT_COMM_FN
: colvarscript_commands_colvar.C, colvarscript_commands_bias.C, colvarscript_commands.C
- CVSCRIPT_COMM_FNAME
: colvarscript_commands.h
- CVSCRIPT_COMM_INIT
: colvarscript.C
- CVSCRIPT_COMM_PROTO
: colvarscript_commands.h
- cvscript_command_arghelp()
: colvarscript_commands.h, colvarscript_commands.C
- cvscript_command_full_help()
: colvarscript_commands.h, colvarscript_commands.C
- cvscript_command_help()
: colvarscript_commands.h, colvarscript_commands.C
- cvscript_command_n_args_max()
: colvarscript_commands.h, colvarscript_commands.C
- cvscript_command_n_args_min()
: colvarscript_commands.h, colvarscript_commands.C
- cvscript_command_names()
: colvarscript_commands.h, colvarscript_commands.C
- cvscript_command_rethelp()
: colvarscript_commands.h, colvarscript_commands.C
- CVSCRIPT_ENUM_COMM
: colvarscript.h
- cvscript_n_commands()
: colvarscript_commands.h, colvarscript_commands.C
- cvt_rgb4f_rgb3u()
: ImageIO.h, ImageIO.C
- cvt_rgb4u_rgb3u()
: ImageIO.h, ImageIO.C
- cvt_rgba4f_rgba4u()
: ImageIO.C
- cylinder_array_bounds()
: OptiXShaders.cu
- cylinder_array_color_bounds()
: OptiXShaders.cu
- cylinder_array_color_intersect()
: OptiXShaders.cu
- cylinder_array_intersect()
: OptiXShaders.cu
- cylinder_buffer
: OptiXShaders.cu
- cylinder_color_buffer
: OptiXShaders.cu
- cylinder_doc
: py_graphics.C
- cylinder_full()
: OpenGLRenderer.C
- CYLINDER_LEADINGCAP
: DispCmds.h
- CYLINDER_TRAILINGCAP
: DispCmds.h
- d -
- D_SHELL
: QMData.h, OrbitalJIT.C, Orbital.C, OpenCLOrbital.C, CUDAOrbital.cu
- DASH_LENGTH
: X3DDisplayDevice.C, WavefrontDisplayDevice.C, VrmlDisplayDevice.C, Vrml2DisplayDevice.C, TachyonDisplayDevice.C, RenderManDisplayDevice.C, RayShadeDisplayDevice.C, RadianceDisplayDevice.C, R3dDisplayDevice.C, POV3DisplayDevice.C, MayaDisplayDevice.C, LibTachyonDisplayDevice.C, GelatoDisplayDevice.C, ArtDisplayDevice.C
- DASHEDLINE
: DispCmds.h
- data
: AtomSel.C
- databases_doc
: py_molecule.C
- datatype
: CUDABench.cu
- DBEGINREPGEOMGROUP
: DispCmds.h
- DBG
: OSPRayRenderer.C, OSPRay2Renderer.C, NVENCMgr.C, ANARIRenderer.C
- DCLIPPLANE
: DispCmds.h
- DCOLORINDEX
: DispCmds.h
- DCOMMENT
: DispCmds.h
- DCONE
: DispCmds.h
- DCUBEARRAY
: DispCmds.h
- DCYLINDER
: DispCmds.h
- def_adv_light_pos
: Scene.C
- DEF_BOND_RES
: AtomRep.C
- DEF_CART_RES
: AtomRep.C
- DEF_LIC_RES
: AtomRep.C
- def_light_color
: Scene.C
- def_light_on
: Scene.C
- def_light_pos
: Scene.C
- DEF_LINE_RES
: AtomRep.C
- DEF_PBUFFER_XRES
: OpenGLPbufferDisplayDevice.C
- DEF_PBUFFER_YRES
: OpenGLPbufferDisplayDevice.C
- DEF_POINT_SIZE
: AtomRep.C
- DEF_SNAPSHOT_FILENAME
: SnapshotDisplayDevice.C
- DEF_SPH_RES
: AtomRep.C
- DEFAULT_ATOMCOLOR
: AtomColor.h
- DEFAULT_ATOMREP
: AtomRep.h
- DEFAULT_ATOMSEL
: VMDApp.C, MoleculeList.C
- DEFAULT_BIN_LENGTH
: VolMapCreateILS.C
- DEFAULT_BINDEPTH
: msmpot_internal.h
- DEFAULT_BINFILL
: msmpot_internal.h
- DEFAULT_BINLENMAX
: msmpot_internal.h
- DEFAULT_CUTOFF
: msmpot_internal.h
- DEFAULT_DENSITY
: msmpot_internal.h
- default_doc
: py_material.C
- DEFAULT_ERRTOL
: msmpot_internal.h
- DEFAULT_EXCL_DIST
: VolMapCreateILS.C, CUDAVolMapCreateILS.cu
- DEFAULT_EXCL_ENERGY
: VolMapCreateILS.C
- DEFAULT_HMIN
: msmpot_internal.h
- DEFAULT_INTERP
: msmpot_internal.h
- DEFAULT_OVER
: msmpot_internal.h
- DEFAULT_RADIUS
: X3DDisplayDevice.C, VrmlDisplayDevice.C, Vrml2DisplayDevice.C, TachyonDisplayDevice.C, RenderManDisplayDevice.C, RayShadeDisplayDevice.C, RadianceDisplayDevice.C, R3dDisplayDevice.C, POV3DisplayDevice.C, OSPRayDisplayDevice.C, OSPRay2DisplayDevice.C, OptiXDisplayDevice.C, LibTachyonDisplayDevice.C, LibGelatoDisplayDevice.C, GelatoDisplayDevice.C, ArtDisplayDevice.C, ANARIDisplayDevice.C
- DEFAULT_SPLIT
: msmpot_internal.h
- defColorNames
: Scene.C
- DEFINE_CLOSEST_HIT
: OptiXShaders.cu
- defOpaque
: MaterialList.C
- defScales
: Scene.C
- defTransp
: MaterialList.C
- DEGTORAD
: utilities.h
- del_all_angle_doc
: py_topo.C
- del_all_bond_doc
: py_topo.C
- del_all_dihed_doc
: py_topo.C
- del_all_improper_doc
: py_topo.C
- del_callback()
: PythonTextInterp.C
- del_doc
: py_material.C
- del_volumetric_doc
: py_molecule.C
- delangle_doc
: py_topo.C
- delbond_doc
: py_topo.C
- deldihed_doc
: py_topo.C
- delete_doc
: py_graphics.C
- deletetool_cb()
: ToolFltkMenu.C
- delframe_doc
: py_molecule.C
- delimproper_doc
: py_topo.C
- delmacro_doc
: py_selection.C
- delrep_doc
: py_molrep.C
- density_add()
: TclVoltool.C
- density_average()
: TclVoltool.C
- density_binmask()
: TclVoltool.C
- density_calc_cc()
: TclVoltool.C
- density_clamp()
: TclVoltool.C
- density_com()
: TclVoltool.C
- density_correlate()
: TclVoltool.C
- density_crop()
: TclVoltool.C
- density_downsample()
: TclVoltool.C
- density_histogram()
: TclVoltool.C
- density_info()
: TclVoltool.C
- density_mdff_potential()
: TclVoltool.C
- density_move()
: TclVoltool.C
- density_moveto()
: TclVoltool.C
- density_multiply()
: TclVoltool.C
- density_range()
: TclVoltool.C
- density_rotate()
: TclVoltool.C
- density_sadd()
: TclVoltool.C
- density_save()
: TclVoltool.C
- density_sigma()
: TclVoltool.C
- density_smooth()
: TclVoltool.C
- density_smult()
: TclVoltool.C
- density_subtract()
: TclVoltool.C
- density_supersample()
: TclVoltool.C
- density_trim()
: TclVoltool.C
- densitygrid
: CUDAQuickSurf.cu
- densitythread()
: QuickSurf.C
- depthcue_cb()
: MainFltkMenu.C
- destroy_gpu()
: CUDAWatershed.h, CUDAWatershed.cu
- detach_doc
: py_imd.C
- dev_excl_scan_sum()
: CUDAParPrefixOps.h, CUDAParPrefixOps.cu
- dev_excl_scan_sum_tmpsz()
: CUDAParPrefixOps.h, CUDAParPrefixOps.cu
- dev_incl_scan_sum()
: CUDAParPrefixOps.h, CUDAParPrefixOps.cu
- dev_incl_scan_sum< float >()
: CUDAParPrefixOps.cu
- dev_incl_scan_sum_tmpsz()
: CUDAParPrefixOps.h, CUDAParPrefixOps.cu
- dev_radix_sort_by_key()
: CUDASort.h, CUDASort.cu
- dev_radix_sort_by_key_tmpsz()
: CUDASort.h, CUDASort.cu
- diagonalize_matrix()
: colvartypes.C
- DIAM_STENCIL
: msmpot_cubic.c
- dict2geom()
: py_label.C
- dihed_doc
: py_topo.C, py_measure.C
- dihedral()
: utilities.h, utilities.C
- DIHEDRALPLANE
: MeasureSymmetry.C
- DIHEGEOMCOL
: GeometryList.C
- dimensionality
: colvarscript_commands_colvar.h
- disableRawMode()
: linenoise.h, linenoise.c
- DISP_LIGHTS
: Scene.h
- disp_moddoc
: py_display.C
- DISPLAY_CAVE
: vmd.C
- DISPLAY_CAVEFORMS
: vmd.C
- DISPLAY_FREEVR
: vmd.C
- DISPLAY_FREEVRFORMS
: vmd.C
- DISPLAY_OGLPBUFFER
: vmd.C
- DISPLAY_TEXT
: vmd.C
- DISPLAY_USES_CAVE
: vmd.C
- DISPLAY_USES_FREEVR
: vmd.C
- DISPLAY_USES_GUI
: vmd.C
- DISPLAY_USES_WINDOW
: vmd.C
- DISPLAY_WIN
: vmd.C
- DISPLAY_WINOGL
: vmd.C
- displayDist
: vmd.C
- displayHeight
: vmd.C
- displayLoc
: vmd.C
- DisplayMethods
: py_display.C
- displaySize
: vmd.C
- displayTypeNames
: vmd.C
- DisplayTypes
: vmd.C
- DispMenu
: MainFltkMenu.C
- distance()
: utilities.h, utilities.C
- distance2()
: utilities.h
- DIV
: y.tab.h, AtomParser.C
- DIV_BY_32
: CUDAWatershed.cu
- DLASTCOMMAND
: DispCmds.h
- DLINE
: DispCmds.h
- DLINEARRAY
: DispCmds.h
- DLINESTYLE
: DispCmds.h
- DLINEWIDTH
: DispCmds.h
- DLITPOINTARRAY
: DispCmds.h
- DM_ANTIALIASING
: MainFltkMenu.C
- DM_AXES
: MainFltkMenu.C
- DM_BACKGROUND
: MainFltkMenu.C
- DM_DEPTHCUEING
: MainFltkMenu.C
- DM_DISPSETTINGS
: MainFltkMenu.C
- DM_FPS
: MainFltkMenu.C
- DM_LASTMENUITEM
: MainFltkMenu.C
- DM_LIGHT0
: MainFltkMenu.C
- DM_LIGHT1
: MainFltkMenu.C
- DM_LIGHT2
: MainFltkMenu.C
- DM_LIGHT3
: MainFltkMenu.C
- DM_ORTHOGRAPHIC
: MainFltkMenu.C
- DM_PERSPECTIVE
: MainFltkMenu.C
- DM_RENDERMODE
: MainFltkMenu.C
- DM_RESETVIEW
: MainFltkMenu.C
- DM_STAGE
: MainFltkMenu.C
- DM_STEREO
: MainFltkMenu.C
- DM_STEREOEYESWAP
: MainFltkMenu.C
- DM_STOPROTATION
: MainFltkMenu.C
- DMABUFPADSIZE
: OpenCLVolCPotential.C, CUDAVolCPotential.cu
- DMATERIALOFF
: DispCmds.h
- DMATERIALON
: DispCmds.h
- dnorm()
: DrawMolecule.C
- do_density_rotate()
: TclVoltool.C
- DO_ONE_PLANE
: CUDAVolMapCreateILS.cu
- do_rotate()
: TclVoltool.C
- DODECAHEDRON
: MeasureSymmetry.C
- dodecahedron()
: VolMapCreateILS.C
- dof_ray()
: OptiXShaders.cu
- doffnumber_cb()
: DisplayFltkMenu.C
- doffocaldist_cb()
: DisplayFltkMenu.C
- dofmode_cb()
: DisplayFltkMenu.C
- dot()
: CUDAMarchingCubes.cu
- dot_prod()
: utilities.h
- DOUBLE_VSUB
: TclVolMap.C
- doublefac()
: QMData.C
- DPICKPOINT_ARRAY
: DispCmds.h
- DPOINT
: DispCmds.h
- DPOINTARRAY
: DispCmds.h
- DPOLYLINEARRAY
: DispCmds.h
- DPRINTF
: pcre.c
- DQ_STRING
: AtomParser.h
- draw_accumulation_buffer()
: OptiXShaders.cu
- draw_accumulation_buffer_stub()
: OptiXShaders.cu
- DRAW_FORCE_SCALE
: DrawForce.C
- draw_letter_D()
: VMDTitle.C
- draw_letter_M()
: VMDTitle.C
- draw_letter_V()
: VMDTitle.C
- draw_outsides()
: VMDTitle.C
- draw_stroke()
: VMDTitle.C
- DSHIFT
: msmpot_cuda_shortrng.cu
- DSPHERE
: DispCmds.h
- DSPHEREARRAY
: DispCmds.h
- DSPHERERES
: DispCmds.h
- DSPHERETYPE
: DispCmds.h
- DSQUARE
: DispCmds.h
- dstream_add()
: Benchmark.C
- dstream_copy()
: Benchmark.C
- dstream_init()
: Benchmark.C
- dstream_scale()
: Benchmark.C
- dstream_triad()
: Benchmark.C
- DTEXT
: DispCmds.h
- DTOEYE
: DisplayDevice.C
- DTOPOINT
: DisplayDevice.C
- DTRIANGLE
: DispCmds.h
- DTRIMESH_C3F_N3F_V3F
: DispCmds.h
- DTRIMESH_C4F_N3F_V3F
: DispCmds.h
- DTRIMESH_C4U_N3B_V3F
: DispCmds.h
- DTRIMESH_C4U_N3F_V3F
: DispCmds.h
- DTRISTRIP
: DispCmds.h
- dtypes_doc
: py_topo.C
- dupframe_doc
: py_molecule.C
- DVOLSLICE
: DispCmds.h
- DVOLTEXOFF
: DispCmds.h
- DVOLTEXON
: DispCmds.h
- DVOLUMETEXTURE
: DispCmds.h
- DWIREMESH
: DispCmds.h
- e -
- e_pdb_beta
: colvarproxy_vmd.C
- e_pdb_field
: colvarproxy_vmd.C
- e_pdb_none
: colvarproxy_vmd.C
- e_pdb_ntot
: colvarproxy_vmd.C
- e_pdb_occ
: colvarproxy_vmd.C
- e_pdb_x
: colvarproxy_vmd.C
- e_pdb_y
: colvarproxy_vmd.C
- e_pdb_z
: colvarproxy_vmd.C
- ECHO
: AtomLexer.C
- eighthtone
: OpenGLStipples.h
- ElementSummary
: MeasureSymmetry.h
- EMPTY_QUEUE
: DrawMolItem2.C
- enableRawMode()
: linenoise.h, linenoise.c
- ends()
: Inform.h, Inform.C
- energythread()
: VolCPotential.C
- ENTER
: linenoise.c
- EOB_ACT_CONTINUE_SCAN
: AtomLexer.C
- EOB_ACT_END_OF_FILE
: AtomLexer.C
- EOB_ACT_LAST_MATCH
: AtomLexer.C
- eofexit
: vmd.C
- EQ
: y.tab.h, AtomParser.C
- ERR1
: pcreinternal.h
- ERR10
: pcreinternal.h
- ERR11
: pcreinternal.h
- ERR12
: pcreinternal.h
- ERR13
: pcreinternal.h
- ERR14
: pcreinternal.h
- ERR15
: pcreinternal.h
- ERR16
: pcreinternal.h
- ERR17
: pcreinternal.h
- ERR18
: pcreinternal.h
- ERR19
: pcreinternal.h
- ERR2
: pcreinternal.h
- ERR20
: pcreinternal.h
- ERR21
: pcreinternal.h
- ERR22
: pcreinternal.h
- ERR23
: pcreinternal.h
- ERR24
: pcreinternal.h
- ERR25
: pcreinternal.h
- ERR26
: pcreinternal.h
- ERR27
: pcreinternal.h
- ERR28
: pcreinternal.h
- ERR3
: pcreinternal.h
- ERR4
: pcreinternal.h
- ERR5
: pcreinternal.h
- ERR6
: pcreinternal.h
- ERR7
: pcreinternal.h
- ERR8
: pcreinternal.h
- ERR9
: pcreinternal.h
- ERRMSG
: msmpot_internal.h
- ERROR
: msmpot_internal.h
- ERROR_STRING
: msmpot.c
- ESC
: linenoise.c
- ESC_A
: pcreinternal.h
- ESC_B
: pcreinternal.h
- ESC_b
: pcreinternal.h
- ESC_D
: pcreinternal.h
- ESC_d
: pcreinternal.h
- ESC_REF
: pcreinternal.h
- ESC_s
: pcreinternal.h
- ESC_S
: pcreinternal.h
- ESC_W
: pcreinternal.h
- ESC_w
: pcreinternal.h
- ESC_z
: pcreinternal.h
- ESC_Z
: pcreinternal.h
- escape_fltk_menustring()
: VMDFltkMenu.h, VMDFltkMenu.C
- escapes
: pcre.c
- evaltcl_doc
: py_vmd.C
- evaluate_grid()
: Orbital.h, Orbital.C
- evaluate_grid_avx2()
: Orbital.C
- evaluate_grid_avx512er()
: Orbital.C
- evaluate_grid_avx512f()
: Orbital.C
- evaluate_grid_fast()
: Orbital.h, Orbital.C
- evaluate_grid_neon()
: Orbital.C
- evaluate_grid_sve()
: Orbital_SVE.C, Orbital.C
- EVENT_COMMAND
: MobileInterface.C
- EVENT_NON_TOUCH
: MobileInterface.C
- EVENT_TOUCH_DOWN
: MobileInterface.C
- EVENT_TOUCH_MOVE
: MobileInterface.C
- EVENT_TOUCH_SOMEDOWN
: MobileInterface.C
- EVENT_TOUCH_SOMEUP
: MobileInterface.C
- EVENT_TOUCH_UP
: MobileInterface.C
- event_tstate
: py_vmd.C
- exception()
: OptiXShaders.cu
- exit_doc
: py_vmd.C
- EXP
: y.tab.h, AtomParser.C
- EXPOBIAS
: QuickSurf_AVX2.C, QuickSurf.C, Orbital.C
- EXPOSHIFT
: QuickSurf_AVX2.C, QuickSurf.C, Orbital.C
- EXT_MENU_NAME
: MainFltkMenu.C
- EXTERIORVOXEL
: MeasureVolInterior.h
- EXTRACLRS
: Scene.h
- EXTRACT_MAX
: pcreinternal.h
- EXWITHIN
: y.tab.h, AtomParser.C
- eyesep_cb()
: DisplayFltkMenu.C
- f -
- F_SHELL
: QMData.h, OrbitalJIT.C, Orbital.C, OpenCLOrbital.C, CUDAOrbital.cu
- fac()
: QMData.C, MeasureSymmetry.C
- FALSE
: utilities.h, pcreinternal.h
- farclip_cb()
: DisplayFltkMenu.C
- FastCalcRMSDAndRotation()
: MeasureQCP.C, Measure.h
- FASTONESIDEDSPHERES
: vmdsphere.frag
- fcc_offset
: pcreinternal.h
- feature
: colvarscript_commands_bias.h
- feature_count_
: colvarmodule_refs.h
- feature_paper_map_
: colvarmodule_refs.h
- file_menu_behavior
: MainFltkMenu.C
- filenames_doc
: py_molecule.C
- FILERENDERER_NOCLIP
: FileRenderer.h
- FILERENDERER_NOCUEING
: FileRenderer.h
- FILERENDERER_NOGEOM
: FileRenderer.h
- FILERENDERER_NOMISCFEATURE
: FileRenderer.h
- FILERENDERER_NOTEXT
: FileRenderer.h
- FILERENDERER_NOTEXTURE
: FileRenderer.h
- FILERENDERER_NOWARNINGS
: FileRenderer.h
- filetypes_doc
: py_molecule.C
- fill_atom_bins()
: VolMapCreateILS.C
- fill_fltk_molchooser()
: VMDFltkMenu.h, VMDFltkMenu.C
- fill_header()
: VideoStream.C, imd.C
- fill_header_uievent()
: VideoStream.C
- find_atom_from_name()
: cmd_label.C
- find_cluster_thr()
: MeasureCluster.C
- find_distance_exclusions()
: VolMapCreateILS.C
- find_ellipse_coords()
: VMDTitle.C
- find_energy_exclusions()
: VolMapCreateILS.C
- find_first_selection_aligned()
: utilities.h, util_simd.C
- find_firstchar()
: pcre.c
- find_fixedlength()
: pcre.c
- find_groups_max_idx_cuda()
: CUDASegmentation.h, CUDASegmentation.cu
- find_last_selection_aligned()
: utilities.h, util_simd.C
- find_max_values()
: CUDASegmentation.cu
- find_max_values_shm()
: CUDASegmentation.cu
- find_max_values_shm_2xl()
: CUDASegmentation.cu
- find_max_values_shm_4xl()
: CUDASegmentation.cu
- find_max_values_warpred()
: CUDASegmentation.cu
- find_menu_from_string()
: VMDFltkMenu.C
- find_minmax()
: SpatialSearch.h, SpatialSearch.C
- find_minmax_all()
: SpatialSearch.h, SpatialSearch.C
- find_minmax_selected()
: SpatialSearch.h, SpatialSearch.C
- find_molecule()
: TclCommands.C
- find_name_string_from_menuname()
: GraphicsFltkMenu.C
- find_next_cluster()
: MeasureCluster.C
- FIND_STEEPEST
: ScaleSpaceFilter.C
- find_within()
: SpatialSearch.h, SpatialSearch.C
- find_within_routine()
: SpatialSearch.C
- finifunc
: PluginMgr.C
- fio_fd
: CUDAMeasureQCP.cu
- first_significant_code()
: pcre.c
- fit()
: TclVoltool.C
- fit_doc
: py_atomsel.C
- fix_pbc_n_sqr()
: Measure.C
- fixed_doc
: py_trans.C
- FLEX_SCANNER
: AtomLexer.C
- flint
: VolMapCreateILS.C, QuickSurf_AVX2.C, QuickSurf.C, Orbital.C, OpenCLOrbital.C, CUDAVolMapCreateILS.cu, CUDAOrbital.cu
- FLOATVAL
: y.tab.h, AtomParser.C
- FLOPSPERATOMEVAL
: VolCPotential.C, OpenCLVolCPotential.C, CUDAVolCPotential.cu
- FLOPSPERFMADD16
: CUDABench.cu
- FLOPSPERLOOP
: CUDABench.cu
- fltk_rint()
: GeometryFltkMenu.C
- FMADD16
: CUDABench.cu
- FMADD16COUNT
: CUDABench.cu
- fmaf3()
: CUDAMarchingCubes.cu
- focal_cb()
: DisplayFltkMenu.C
- fog_color()
: OptiXShaders.cu
- fog_coord()
: OptiXShaders.cu
- FOG_off
: OptiXShaders.cu
- FOG_on
: OptiXShaders.cu
- force
: colvarscript_commands_colvar.h
- force_cb()
: ToolFltkMenu.C
- FORCE_SCALE
: PickModeForce.C
- forceconstant_cb()
: ToolFltkMenu.C
- forcescale_cb()
: ToolFltkMenu.C
- forward_cb()
: MainFltkMenu.C
- forward_doc
: py_animate.C
- fpbc_exec_join()
: FastPBC.h, FastPBC.C, CUDAFastPBC.cu
- fpbc_exec_join_cpu()
: FastPBC.h, FastPBC.C
- fpbc_exec_recenter()
: FastPBC.h, FastPBC.C, CUDAFastPBC.cu
- fpbc_exec_recenter_cpu()
: FastPBC.h, FastPBC.C
- fpbc_exec_unwrap()
: FastPBC.h, FastPBC.C, CUDAFastPBC.cu
- fpbc_exec_unwrap_cpu()
: FastPBC.h, FastPBC.C
- fpbc_exec_wrapatomic()
: FastPBC.h, FastPBC.C, CUDAFastPBC.cu
- fpbc_exec_wrapatomic_cpu()
: FastPBC.h, FastPBC.C
- fpbc_exec_wrapcompound()
: FastPBC.h, FastPBC.C, CUDAFastPBC.cu
- fpbc_exec_wrapcompound_cpu()
: FastPBC.h, FastPBC.C
- fpbc_join()
: TclFastPBC.C
- fpbc_recenter()
: TclFastPBC.C
- fpbc_unwrap()
: TclFastPBC.C
- fpbc_wrap()
: TclFastPBC.C
- fps_cb()
: MainFltkMenu.C
- fragment_data
: AtomSel.C
- fragmentperatom()
: CUDAFastPBC.cu
- fragwscale()
: CUDAFastPBC.cu
- frame_delete_selector()
: frame_selector.h, frame_selector.C
- frame_doc
: py_atomsel.C
- frame_selector()
: frame_selector.h, frame_selector.C
- framebuffer
: OptiXShaders.cu
- free_cuda_array()
: CUDAGaussianBlur.h, CUDAGaussianBlur.cu
- free_gpu_temp_storage()
: CUDASegmentation.h, CUDASegmentation.cu
- free_to_CAVE_memory()
: CaveRoutines.h, CaveRoutines.C
- free_to_FreeVR_memory()
: FreeVRRoutines.h, FreeVRRoutines.C
- freeCompletions()
: linenoise.c
- freeHintsCallback
: linenoise.c
- freeHintsCallbackCtx
: linenoise.c
- freeHistory()
: linenoise.c
- freevr_gl_init_fn()
: FreeVRRoutines.h, FreeVRRoutines.C
- freevr_renderer()
: FreeVRRoutines.h, FreeVRRoutines.C
- freevrdisplay
: FreeVRRoutines.C
- freevrscene
: FreeVRRoutines.C
- freevrStereoNameStr
: FreeVRDisplayDevice.C
- FREEVRUSERWLOCK
: FreeVRScene.C
- FROM
: y.tab.h, AtomParser.C
- FS_ERROR
: vmdfsinfo.c
- FS_IS_LOCAL
: vmdfsinfo.c
- FS_IS_REMOTE
: vmdfsinfo.c
- FS_IS_UNKNOWN
: vmdfsinfo.c
- fstream_add()
: Benchmark.C
- fstream_copy()
: Benchmark.C
- fstream_init()
: Benchmark.C
- fstream_scale()
: Benchmark.C
- fstream_triad()
: Benchmark.C
- FTP_FAILURE
: Win32ftp.h
- FTP_SUCCESS
: Win32ftp.h
- fullcirclearc()
: GelatoDisplayDevice.C
- FUNC
: y.tab.h, AtomParser.C
- g -
- G_SHELL
: QMData.h, OrbitalJIT.C, Orbital.C, OpenCLOrbital.C, CUDAOrbital.cu
- gaussdensity_cc()
: CUDAMDFF.cu
- gaussdensity_diff()
: CUDAMDFF.cu
- gaussdensity_fast()
: CUDAMDFF.cu
- gaussdensity_sumabsdiff()
: CUDAMDFF.cu
- gaussian1D_x_cuda()
: CUDAGaussianBlur.h, CUDAGaussianBlur.cu
- gaussian1D_y_cuda()
: CUDAGaussianBlur.h, CUDAGaussianBlur.cu
- gaussian1D_z_cuda()
: CUDAGaussianBlur.h, CUDAGaussianBlur.cu
- gaussian3D_cuda()
: CUDAGaussianBlur.h
- GaussianBlur< float >
: GaussianBlur.C
- GaussianBlur< unsigned char >
: GaussianBlur.C
- GaussianBlur< unsigned short >
: GaussianBlur.C
- gausslim_quality()
: CUDAMDFF.cu
- GBLOCKSZX
: CUDAQuickSurf.cu, CUDAMDFF.cu
- GBLOCKSZY
: CUDAQuickSurf.cu, CUDAMDFF.cu
- GBLOCKSZZ
: CUDAQuickSurf.cu, CUDAMDFF.cu
- gcd()
: msmpot_setup.c
- GE
: y.tab.h, AtomParser.C
- generateTriangleColorNormal()
: CUDAMarchingCubes.cu
- generateTriangleNormals()
: CUDAMarchingCubes.cu
- generateTriangleVerticesSMEM()
: CUDAMarchingCubes.cu
- generic_atom_boolean
: AtomSel.C
- generic_atom_data
: AtomSel.C
- generic_get_names()
: P_UIVR.C
- generic_molinfo_data
: TclMolInfo.C
- generic_molinfo_pbc
: TclMolInfo.C
- generic_molinfo_pbc_set
: TclMolInfo.C
- generic_molinfo_qm
: TclMolInfo.C
- generic_molinfo_qm_arr
: TclMolInfo.C
- generic_molinfo_qm_mat
: TclMolInfo.C
- generic_molinfo_qm_string
: TclMolInfo.C
- generic_molinfo_qmts_arr
: TclMolInfo.C
- generic_molinfo_qmts_int
: TclMolInfo.C
- generic_molinfo_qmts_mat
: TclMolInfo.C
- generic_molinfo_set_data
: TclMolInfo.C
- generic_molinfo_simulation
: TclMolInfo.C
- generic_molinfo_simulation_set
: TclMolInfo.C
- generic_molinfo_wave_int
: TclMolInfo.C
- generic_set_atom_data
: AtomSel.C
- generic_set_sstruct_boolean
: AtomSel.C
- generic_sstruct_boolean
: AtomSel.C
- generic_tri_bounds()
: OptiXShaders.cu
- geom2dict()
: py_label.C
- GeomListPtr
: GeometryList.h
- get_attribute_index()
: TclMeasure.C, TclCommands.h
- get_colorlist_doc
: py_color.C
- get_colormap_doc
: py_color.C
- get_colors_doc
: py_color.C
- get_colvarscript_result()
: colvarscript.h, colvarscript.C
- get_doc
: py_display.C, py_atomsel.C
- get_force_norm2()
: colvarmodule_utils.h
- get_frame_doc
: py_molecule.C
- get_intersection_color()
: OptiXShaders.cu
- get_intersection_normal()
: OptiXShaders.cu
- get_molecule()
: py_atomsel.C
- get_nearby_atom()
: SpringTool.C
- get_overlap_matrix()
: QMData.C
- get_periodic_doc
: py_molecule.C
- get_pte_idx()
: PeriodicTable.C
- get_pte_idx_from_string()
: PeriodicTable.h, PeriodicTable.C
- get_pte_label()
: PeriodicTable.h, PeriodicTable.C
- get_pte_mass()
: PeriodicTable.h, PeriodicTable.C
- get_pte_vdw_radius()
: PeriodicTable.h, PeriodicTable.C
- get_scale_doc
: py_molrep.C
- get_smooth_doc
: py_molrep.C
- get_tachyon_run_string()
: TachyonDisplayDevice.C
- get_temporary_filename()
: Stride.C
- get_top_doc
: py_molecule.C
- get_transform_to_orthonormal_cell()
: MeasurePBC.C, Measure.h
- get_verbose_flag()
: OptiXRenderer.C
- get_visible_doc
: py_molecule.C
- get_vmdapp()
: py_commands.h, py_commands.C
- get_volumetric_doc
: py_molecule.C
- get_weights_from_attribute()
: TclMeasure.C, TclCommands.h
- get_weights_from_tcl_list()
: TclMeasure.C, TclCommands.h
- getbonds()
: py_atomsel.C
- getColumns()
: linenoise.c
- getCursorPosition()
: linenoise.c
- GETCWD
: colvarbias_meta.C
- getfloat32()
: MobileInterface.C
- getframe()
: py_atomsel.C
- getint32()
: MobileInterface.C
- getloc_doc
: py_axes.C
- getmacro_doc
: py_selection.C
- getmolid()
: py_atomsel.C
- getOrderedInt()
: CUDASegmentation.cu
- getOrderedInt< float >()
: CUDASegmentation.cu
- getOrderedIntHost()
: CUDASegmentation.cu
- getOrderedIntHost< float >()
: CUDASegmentation.cu
- getvalues()
: py_label.C
- GGRIDSZ
: CUDAQuickSurf.cu, CUDAMDFF.cu
- GIGABYTE
: CUDAWatershed.cu
- GL_GLEXT_PROTOTYPES
: OpenGLRenderer.h, OpenGLExtensions.h, glwin.c
- GLAPI
: OpenGLExtensions.h
- GLATTACHOBJECTARB
: OpenGLExtensions.h
- GLCACHE_FAIL
: OpenGLCache.h
- glCacheNameStr
: Win32OpenGLDisplayDevice.C, SDLOpenGLDisplayDevice.C, OpenGLPbufferDisplayDevice.C, OpenGLDisplayDevice.C, FltkOpenGLDisplayDevice.C
- GLCOMPILESHADERARB
: OpenGLExtensions.h
- GLCREATEPROGRAMOBJECTARB
: OpenGLExtensions.h
- GLCREATESHADEROBJECTARB
: OpenGLExtensions.h
- GLDELETEOBJECTARB
: OpenGLExtensions.h
- GLDETACHOBJECTARB
: OpenGLExtensions.h
- GLGETINFOLOGARB
: OpenGLExtensions.h
- GLGETOBJECTPARAMETERIVARB
: OpenGLExtensions.h
- GLGETUNIFORMLOCATIONARB
: OpenGLExtensions.h
- GLLINKPROGRAMARB
: OpenGLExtensions.h
- GLLOCKARRAYSEXT
: OpenGLExtensions.h
- GLMULTIDRAWELEMENTSEXT
: OpenGLExtensions.h
- glob_block_count
: CUDAMeasureQCP.cu
- GLOOPS
: CUDABench.cu
- GLPOINTPARAMETERFARB
: OpenGLExtensions.h
- GLPOINTPARAMETERFVARB
: OpenGLExtensions.h
- glPopMatrix()
: OpenGLRenderer.C
- glRenderNameStr
: Win32OpenGLDisplayDevice.C, SDLOpenGLDisplayDevice.C, OpenGLPbufferDisplayDevice.C, OpenGLDisplayDevice.C, FltkOpenGLDisplayDevice.C
- GLSHADERSOURCEARB
: OpenGLExtensions.h
- glStereoNameStr
: Win32OpenGLDisplayDevice.C, SDLOpenGLDisplayDevice.C, OpenGLPbufferDisplayDevice.C, OpenGLDisplayDevice.C, FltkOpenGLDisplayDevice.C
- GLTEXIMAGE3D
: OpenGLExtensions.h
- GLUNIFORM1FVARB
: OpenGLExtensions.h
- GLUNIFORM1IARB
: OpenGLExtensions.h
- GLUNIFORM2FVARB
: OpenGLExtensions.h
- GLUNIFORM3FVARB
: OpenGLExtensions.h
- GLUNIFORM4FVARB
: OpenGLExtensions.h
- GLUNLOCKARRAYSEXT
: OpenGLExtensions.h
- GLUSEPROGRAMOBJECTARB
: OpenGLExtensions.h
- glwin_alloc_init()
: glwin.c
- glwin_compile_hmd_shaders()
: glwin.c
- glwin_compile_shaders()
: glwin.c
- glwin_create()
: glwin.h, glwin.c
- glwin_destroy()
: glwin.h, glwin.c
- glwin_destroy_shaders()
: glwin.c
- glwin_draw_image()
: glwin.h, glwin.c
- glwin_draw_image_rgb3u()
: glwin.h, glwin.c
- glwin_draw_image_tex_rgb3u()
: glwin.h, glwin.c
- glwin_draw_sphere_tex()
: glwin.h, glwin.c
- GLWIN_ERROR
: glwin.h
- GLWIN_EV_KBD
: glwin.h
- GLWIN_EV_KBD_DELETE
: glwin.h
- GLWIN_EV_KBD_DOWN
: glwin.h
- GLWIN_EV_KBD_END
: glwin.h
- GLWIN_EV_KBD_ESC
: glwin.h
- GLWIN_EV_KBD_F1
: glwin.h
- GLWIN_EV_KBD_F10
: glwin.h
- GLWIN_EV_KBD_F11
: glwin.h
- GLWIN_EV_KBD_F12
: glwin.h
- GLWIN_EV_KBD_F2
: glwin.h
- GLWIN_EV_KBD_F3
: glwin.h
- GLWIN_EV_KBD_F4
: glwin.h
- GLWIN_EV_KBD_F5
: glwin.h
- GLWIN_EV_KBD_F6
: glwin.h
- GLWIN_EV_KBD_F7
: glwin.h
- GLWIN_EV_KBD_F8
: glwin.h
- GLWIN_EV_KBD_F9
: glwin.h
- GLWIN_EV_KBD_HOME
: glwin.h
- GLWIN_EV_KBD_INSERT
: glwin.h
- GLWIN_EV_KBD_LEFT
: glwin.h
- GLWIN_EV_KBD_PAGE_DOWN
: glwin.h
- GLWIN_EV_KBD_PAGE_UP
: glwin.h
- GLWIN_EV_KBD_RIGHT
: glwin.h
- GLWIN_EV_KBD_UP
: glwin.h
- GLWIN_EV_MOUSE_LEFT
: glwin.h
- GLWIN_EV_MOUSE_MIDDLE
: glwin.h
- GLWIN_EV_MOUSE_MOVE
: glwin.h
- GLWIN_EV_MOUSE_RIGHT
: glwin.h
- GLWIN_EV_MOUSE_WHEELDOWN
: glwin.h
- GLWIN_EV_MOUSE_WHEELUP
: glwin.h
- GLWIN_EV_NONE
: glwin.h
- GLWIN_EV_POLL_BLOCK
: glwin.h
- GLWIN_EV_POLL_NONBLOCK
: glwin.h
- GLWIN_EV_WINDOW_CLOSE
: glwin.h
- glwin_fbo_target_bind()
: glwin.h, glwin.c
- glwin_fbo_target_create()
: glwin.h, glwin.c
- glwin_fbo_target_destroy()
: glwin.h, glwin.c
- glwin_fbo_target_draw_fbo()
: glwin.h, glwin.c
- glwin_fbo_target_draw_normal()
: glwin.h, glwin.c
- glwin_fbo_target_resize()
: glwin.h, glwin.c
- glwin_fbo_target_unbind()
: glwin.h, glwin.c
- glwin_fctnptr
: glwin.c
- glwin_fullscreen()
: glwin.h, glwin.c
- glwin_get_lastevent()
: glwin.h, glwin.c
- glwin_get_mousepointer()
: glwin.h, glwin.c
- glwin_get_procaddress()
: glwin.c
- glwin_get_spaceball()
: glwin.h, glwin.c
- glwin_get_wininfo()
: glwin.h, glwin.c
- glwin_get_winpos()
: glwin.h, glwin.c
- glwin_get_winsize()
: glwin.h, glwin.c
- glwin_handle_events()
: glwin.h, glwin.c
- glwin_init_exts()
: glwin.c
- GLWIN_NOT_IMPLEMENTED
: glwin.h
- glwin_print_glsl_infolog()
: glwin.c
- glwin_query_extension()
: glwin.h, glwin.c
- glwin_query_vsync()
: glwin.h, glwin.c
- glwin_reposition()
: glwin.h, glwin.c
- glwin_resize()
: glwin.h, glwin.c
- glwin_spaceball_available()
: glwin.h, glwin.c
- glwin_spheremap_create_hmd_warp()
: glwin.h, glwin.c
- glwin_spheremap_destroy_hmd_warp()
: glwin.h, glwin.c
- glwin_spheremap_draw_hmd_warp()
: glwin.h, glwin.c
- glwin_spheremap_draw_prepare()
: glwin.h, glwin.c
- glwin_spheremap_draw_tex()
: glwin.h, glwin.c
- glwin_spheremap_update_hmd_warp()
: glwin.h, glwin.c
- glwin_spheremap_upload_tex_rgb3u()
: glwin.h, glwin.c
- GLWIN_STEREO_OFF
: glwin.h
- GLWIN_STEREO_OVERUNDER
: glwin.h
- GLWIN_SUCCESS
: glwin.h
- glwin_swap_buffers()
: glwin.h, glwin.c
- GLX_GLXEXT_PROTOTYPES
: OpenGLExtensions.h, glwin.c
- glx_query_extension()
: glwin.c
- glXGetProcAddress()
: ANARIRenderer.C
- goto_doc
: py_animate.C
- gpu_ooc_bench()
: CUDAKernels.h, CUDABench.cu
- GPU_WARP_UPDATE
: CUDAWatershed.cu
- GPU_X_ALIGNMASK
: OrbitalJIT.C, OpenCLVolCPotential.C, OpenCLOrbital.C, CUDAVolCPotential.cu, CUDAOrbital.cu
- GPU_Y_ALIGNMASK
: OrbitalJIT.C, OpenCLVolCPotential.C, OpenCLOrbital.C, CUDAVolCPotential.cu, CUDAOrbital.cu
- gpuglobmemcpybw()
: CUDABench.cu
- gpuglobmemsetbw()
: CUDABench.cu
- grab_CAVE_memory()
: CaveRoutines.h, CaveRoutines.C
- grab_FreeVR_memory()
: FreeVRRoutines.h, FreeVRRoutines.C
- gradient_t
: colvarbias_abf.h
- graphics_menuitems
: MainFltkMenu.C
- graphics_moddoc
: py_graphics.C
- graphics_tcl()
: TclGraphics.C, TclCommands.h
- GraphicsMethods
: py_graphics.C
- GRID_CELL_EMPTY
: CUDASpatialSearch.h, CUDASpatialSearch.cu
- GRID_DONE
: msmpot_internal.h
- GRID_INDEX
: msmpot_internal.h
- GRID_INDEX_CHECK
: msmpot_internal.h
- GRID_INIT
: msmpot_internal.h
- GRID_POINTER
: msmpot_internal.h
- GRID_RESIZE
: msmpot_internal.h
- GRID_TEMPLATE
: msmpot_internal.h
- GRID_ZERO
: msmpot_internal.h
- GRIDSIZEX
: CUDABench.cu
- gridspacing
: CUDAQuickSurf.cu
- GROUP_BLOCK_SIZE
: CUDASegmentation.cu
- groups
: colvarscript_commands_colvar.h
- GROWN_DISPLAYLIST_SIZE
: VMDDisplayList.C
- GT
: y.tab.h, AtomParser.C
- GTEXBLOCKSZZ
: CUDAQuickSurf.cu
- GTEXUNROLL
: CUDAQuickSurf.cu
- guassian3D_gpu()
: CUDAWatershed.h
- GUI_WAVEF_EXCI_GROUND
: QMData.h
- GUI_WAVEF_SPIN_ALPHA
: QMData.h
- GUI_WAVEF_SPIN_BETA
: QMData.h
- GUI_WAVEF_TYPE_CANON
: QMData.h
- GUI_WAVEF_TYPE_CINAT
: QMData.h
- GUI_WAVEF_TYPE_GEMINAL
: QMData.h
- GUI_WAVEF_TYPE_LOCAL
: QMData.h
- GUI_WAVEF_TYPE_MCSCFNAT
: QMData.h
- GUI_WAVEF_TYPE_MCSCFOPT
: QMData.h
- GUI_WAVEF_TYPE_OTHER
: QMData.h
- GUNROLL
: CUDAQuickSurf.cu, CUDAMDFF.cu
- h -
- h2float()
: Hershey.C
- H_SHELL
: QMData.h, OrbitalJIT.C, Orbital.C, OpenCLOrbital.C, CUDAOrbital.cu
- halftone
: OpenGLStipples.h
- handle_legacy_keywords()
: py_molecule.C
- handle_vrpn_button()
: P_VRPNButtons.C
- handle_vrpn_tracker()
: P_VRPNTracker.C
- hash()
: hash.c
- hash_delete()
: hash.h, hash.c
- hash_destroy()
: hash.h, hash.c
- hash_entries()
: hash.h, hash.c
- HASH_FAIL
: inthash.h, hash.h
- hash_init()
: hash.h, hash.c
- hash_insert()
: hash.h, hash.c
- HASH_LIMIT
: inthash.c, hash.c
- hash_lookup()
: hash.h, hash.c
- hash_node_t
: hash.c
- hash_stats()
: hash.h, hash.c
- hash_t
: hash.h
- hashAtoms()
: CUDASpatialSearch.cu
- HEADERSIZE
: imd.C
- HEADLIGHT_off
: OptiXShaders.cu
- HEADLIGHT_on
: OptiXShaders.cu
- help
: colvarscript_commands_bias.h
- help_cb()
: MainFltkMenu.C
- help_constcharptr()
: py_atomsel.C
- help_double()
: py_atomsel.C
- help_int()
: py_atomsel.C
- hersheyDrawInitLetter()
: Hershey.h, Hershey.C
- hersheyDrawLetterOpenGL()
: Hershey.h, Hershey.C
- hersheyDrawNextLine()
: Hershey.h, Hershey.C
- hersheyFontData
: Hershey.C
- hexahedron()
: VolMapCreateILS.C
- hill_climb_kernel()
: CUDASegmentation.cu
- hill_climb_merge_cuda()
: CUDASegmentation.h, CUDASegmentation.cu
- hill_reilly_ring_color()
: DrawRingsUtils.h, DrawRingsUtils.C
- hill_reilly_ring_colorscale()
: DrawRingsUtils.h, DrawRingsUtils.C
- hill_reilly_ring_pucker()
: DrawRingsUtils.h, DrawRingsUtils.C
- hintsCallback
: linenoise.c
- hintsCallbackCtx
: linenoise.c
- histogram()
: Voltool.h, Voltool.C
- history
: linenoise.c
- history_add_value()
: colvar.C
- history_incr()
: colvar.C
- history_len
: linenoise.c
- history_max_len
: linenoise.c
- hmd_compute_warped_coords()
: glwin.c
- HMD_DIVCNT
: glwin.c
- hmd_draw_eye_lines()
: glwin.c
- hmd_draw_eye_texquads()
: glwin.c
- hmd_frag
: glwin.c
- hmd_vert
: glwin.c
- HORIZONTALPLANE
: MeasureSymmetry.C
- hotcold_gradient()
: DrawRingsUtils.C
- hotcold_gradient_lerp()
: DrawRingsUtils.C
- HSItoRGB()
: VolumeTexture.C
- i -
- I_SHELL
: QMData.h
- icosahedron_geodesic()
: VolMapCreateILS.C
- idx2sub_tril()
: MeasureQCP.C, CUDAMeasureQCP.cu
- imd_disconnect()
: imd.h, imd.C
- IMD_DISCONNECT
: imd.h
- IMD_ENERGIES
: imd.h
- IMD_FCOORDS
: imd.h
- imd_go()
: imd.C
- IMD_GO
: imd.h
- imd_handshake()
: imd.h, imd.C
- IMD_HANDSHAKE
: imd.h
- imd_htonl()
: imd.C
- IMD_IOERROR
: imd.h
- imd_kill()
: imd.h, imd.C
- IMD_KILL
: imd.h
- IMD_MDCOMM
: imd.h
- imd_moddoc
: py_imd.C
- imd_ntohl()
: imd.C
- imd_pause()
: imd.h, imd.C
- IMD_PAUSE
: imd.h
- imd_readn()
: VMDCollab.C, imd.C
- imd_recv_energies()
: imd.h, imd.C
- imd_recv_fcoords()
: imd.h, imd.C
- imd_recv_handshake()
: imd.h, imd.C
- imd_recv_header()
: imd.h, imd.C
- imd_recv_header_nolengthswap()
: imd.C
- imd_recv_mdcomm()
: imd.h, imd.C
- imd_send_energies()
: imd.h, imd.C
- imd_send_fcoords()
: imd.h, imd.C
- imd_send_mdcomm()
: imd.h, imd.C
- imd_trate()
: imd.h, imd.C
- IMD_TRATE
: imd.h
- imd_writen()
: VMDCollab.C, imd.C
- imdreaderthread()
: IMDSimThread.C
- IMDType
: imd.h
- IMDType_t
: imd.h
- IMDVERSION
: imd.C
- impropers_doc
: py_topo.C
- IndexType
: msmpot_internal.h
- inferno_data
: ColorScaleTables.h
- INFINITE_ORDER
: MeasureSymmetry.C
- info_doc
: py_graphics.C
- init_browserpopup_menuitems
: MainFltkMenu.C
- init_display_menuitems
: MainFltkMenu.C
- init_file_menuitems
: MainFltkMenu.C
- init_from_identity()
: Voltool.C
- init_from_intersection()
: Voltool.h, Voltool.C
- init_from_union()
: Voltool.h, Voltool.C
- init_gpu()
: CUDAWatershed.h, CUDAWatershed.cu
- init_gpu_on_device()
: CUDAWatershed.h, CUDAWatershed.cu
- init_group_map()
: CUDASegmentation.cu
- init_help_menuitems
: MainFltkMenu.C
- init_hist()
: CUDAMeasureRDF.cu
- init_hist_f()
: CUDAMeasureRDF.cu
- init_max_array()
: CUDASegmentation.cu
- init_molecule_menuitems
: MainFltkMenu.C
- init_mouse_menuitems
: MainFltkMenu.C
- init_neighbor_offsets()
: CUDAWatershed.cu
- init_new_volume()
: Voltool.h, Voltool.C
- init_new_volume_molecule()
: Voltool.h, Voltool.C
- initanimate()
: py_commands.h, py_animate.C
- initatomsel()
: py_commands.h, py_atomsel.C
- initaxes()
: py_commands.h, py_axes.C
- initcolor()
: py_commands.h, py_color.C
- initdisplay()
: py_display.C, py_commands.h
- INITERROR
: py_vmd.C
- initFilenames
: vmd.C
- initFiletypes
: vmd.C
- initfunc
: PluginMgr.C
- initgraphics()
: py_graphics.C, py_commands.h
- INITIAL
: AtomLexer.C
- initimd()
: py_imd.C, py_commands.h
- initlabel()
: py_label.C, py_commands.h
- initmaterial()
: py_material.C, py_commands.h
- initmeasure()
: py_measure.C, py_commands.h
- initmolecule()
: py_molecule.C, py_commands.h
- initmolrep()
: py_molrep.C, py_commands.h
- initmouse()
: py_mouse.C, py_commands.h
- initrender()
: py_render.C, py_commands.h
- initselection()
: py_selection.C, py_commands.h
- inittopology()
: py_topo.C, py_commands.h
- inittrans()
: py_trans.C, py_commands.h
- initvmd()
: py_vmd.C, py_commands.h
- initvmdcallbacks()
: PythonTextInterp.C, py_commands.h
- initvmdmenu()
: py_menu.C, py_commands.h
- initvmdnumpy()
: py_numeric.C, py_commands.h
- InnerProductSOA()
: MeasureQCP.C
- INST_DESTROY_GPU
: CUDAWatershed.cu
- INST_DEV_EXCL_SCAN_SUM
: CUDAParPrefixOps.cu
- INST_DEV_EXCL_SCAN_SUM_TMPSZ
: CUDAParPrefixOps.cu
- INST_DEV_RADIX_SORT_BY_KEY
: CUDASort.cu
- INST_DEV_RADIX_SORT_BY_KEY_TMPSZ
: CUDASort.cu
- INST_FIND_MAX_IDX_CUDA
: CUDASegmentation.cu
- INST_GAUSSIAN_CUDA
: CUDAGaussianBlur.cu
- INST_GET_RESULTS
: Segmentation.C
- INST_HILL_CLIMB_MERGE_CUDA
: CUDASegmentation.cu
- INST_INIT_GPU
: CUDAWatershed.cu
- INST_INIT_GPU_ON_DEV
: CUDAWatershed.cu
- INST_SCALE_SPACE
: ScaleSpaceFilter.C
- INST_SEQ_GROUPS_CUDA
: CUDASegmentation.cu
- INST_UPDATE_CUDA
: CUDAWatershed.cu
- INST_WATERSHED
: Watershed.C
- INST_WATERSHED_HILL_CLIMB_MERGE_CUDA
: CUDASegmentation.cu
- INSTANCE_ALL
: VMDDisplayList.h
- INSTANCE_NONE
: VMDDisplayList.h
- INSTANCE_NOSELF
: VMDDisplayList.h
- int32
: VMDCollab.C, imd.h
- INTERIORVOXEL
: MeasureVolInterior.h
- INTERP_PARAMS
: msmpot_setup.c
- interpolation()
: msmpot_cubic.c
- interpolation_factored()
: msmpot_cubic.c
- InterpParams
: msmpot_setup.c
- intersectlines2D()
: GelatoDisplayDevice.C
- inthash()
: inthash.c
- inthash_delete()
: inthash.h, inthash.c
- inthash_destroy()
: inthash.h, inthash.c
- inthash_entries()
: inthash.h, inthash.c
- inthash_init()
: inthash.h, inthash.c
- inthash_insert()
: inthash.h, inthash.c
- inthash_lookup()
: inthash.h, inthash.c
- inthash_node_t
: inthash.c
- inthash_stats()
: inthash.h, inthash.c
- inthash_t
: inthash.h
- intlist
: MeasureCluster.C
- intstack_compact()
: intstack.h, intstack.c
- intstack_create()
: intstack.h, intstack.c
- intstack_destroy()
: intstack.h, intstack.c
- intstack_empty()
: intstack.h, intstack.c
- intstack_pop()
: intstack.h, intstack.c
- intstack_popall()
: intstack.h, intstack.c
- intstack_push()
: intstack.h, intstack.c
- IntStackHandle
: intstack.h
- INTVAL
: y.tab.h, AtomParser.C
- invacgridspacing
: CUDAQuickSurf.cu
- inverseboxsize()
: CUDAFastPBC.cu
- is_active_doc
: py_animate.C
- is_anchored()
: pcre.c
- is_counted_repeat()
: pcre.c
- IS_HYDROGEN
: BaseMolecule.h
- is_pyint()
: py_commands.h, py_commands.C
- is_pystring()
: py_commands.h, py_commands.C
- IS_SET_ALL
: msmpot_internal.h
- IS_SET_ANY
: msmpot_internal.h
- IS_SET_X
: msmpot_internal.h
- IS_SET_Y
: msmpot_internal.h
- IS_SET_Z
: msmpot_internal.h
- is_startline()
: pcre.c
- isfloat()
: MeasureVolInterior.h, MeasureVolInterior.C
- ISOCONTOUR_INTERNAL
: Isocontour.C
- ISOSURFACE_INTERNAL
: Isosurface.C
- isovalue
: MeasureVolInterior.C
- isprime()
: MeasureSymmetry.C
- isUnsupportedTerm()
: linenoise.c
- it
: colvarscript_commands_colvar.h
- iter_dealloc()
: py_atomsel.C
- iter_len()
: py_atomsel.C
- iter_methods
: py_atomsel.C
- iter_next()
: py_atomsel.C
- itertype
: py_atomsel.C
- itypes_doc
: py_topo.C
- j -
- k -
- l -
- label_add_doc
: py_label.C
- label_del_doc
: py_label.C
- label_moddoc
: py_label.C
- label_size_doc
: py_label.C
- label_thick_doc
: py_label.C
- label_values_doc
: py_label.C
- label_visible_doc
: py_label.C
- LabelMethods
: py_label.C
- LATENCYITER
: CUDABench.cu
- latticecutoff()
: msmpot_cubic.c
- layout_fr()
: TclGraphLayout.C
- lcc_offset
: pcreinternal.h
- LE
: y.tab.h, AtomParser.C
- least_squares()
: DrawMolItem.C
- legacy_atomsel_get()
: py_atomsel.C
- legacy_atomsel_set()
: py_atomsel.C
- length()
: CUDAMarchingCubes.cu
- lerp()
: CUDAMarchingCubes.cu
- lerp_color_range()
: DrawRingsUtils.C
- letter_M_width()
: VMDTitle.C
- letter_V_width()
: VMDTitle.C
- lfac
: msmpot_cuda_latcut.cu
- LG_SUBCUBESZ
: msmpot_cuda_latcut.cu
- light_cb()
: MainFltkMenu.C
- line_doc
: py_graphics.C
- linenoise()
: linenoise.h, linenoise.c
- LINENOISE_DEFAULT_HISTORY_MAX_LEN
: linenoise.c
- LINENOISE_HISTORY_NEXT
: linenoise.c
- LINENOISE_HISTORY_PREV
: linenoise.c
- LINENOISE_MAX_LINE
: linenoise.c
- linenoiseAddCompletion()
: linenoise.h, linenoise.c
- linenoiseAtExit()
: linenoise.c
- linenoiseBeep()
: linenoise.c
- linenoiseClearScreen()
: linenoise.h, linenoise.c
- linenoiseCompletions
: linenoise.h
- linenoiseEdit()
: linenoise.c
- linenoiseEditBackspace()
: linenoise.c
- linenoiseEditDelete()
: linenoise.c
- linenoiseEditDeletePrevWord()
: linenoise.c
- linenoiseEditHistoryNext()
: linenoise.c
- linenoiseEditInsert()
: linenoise.c
- linenoiseEditMoveEnd()
: linenoise.c
- linenoiseEditMoveHome()
: linenoise.c
- linenoiseEditMoveLeft()
: linenoise.c
- linenoiseEditMoveRight()
: linenoise.c
- linenoiseFree()
: linenoise.h, linenoise.c
- linenoiseHintsCallback
: linenoise.h
- linenoiseHistoryAdd()
: linenoise.h, linenoise.c
- linenoiseHistoryLoad()
: linenoise.h, linenoise.c
- linenoiseHistorySave()
: linenoise.h, linenoise.c
- linenoiseHistorySetMaxLen()
: linenoise.h, linenoise.c
- linenoiseMaskModeDisable()
: linenoise.h, linenoise.c
- linenoiseMaskModeEnable()
: linenoise.h, linenoise.c
- linenoiseNoTTY()
: linenoise.c
- linenoisePrintKeyCodes()
: linenoise.h, linenoise.c
- linenoiseRaw()
: linenoise.c
- linenoiseSetCompletionCallback()
: linenoise.h, linenoise.c
- linenoiseSetFreeHintsCallback()
: linenoise.h, linenoise.c
- linenoiseSetHintsCallback()
: linenoise.h, linenoise.c
- linenoiseSetMultiLine()
: linenoise.h, linenoise.c
- linklist_evaluation()
: msmpot_compute.c
- linklist_hashing()
: msmpot_compute.c
- list_doc
: py_graphics.C
- listall_doc
: py_render.C, py_material.C, py_label.C
- listattrs_doc
: py_atomsel.C
- lndebug
: linenoise.c
- loadAsMolecules
: vmd.C
- loadnew_cb()
: MainFltkMenu.C
- loadstate_cb()
: MainFltkMenu.C
- loc_doc
: py_menu.C
- LOG2EF
: Orbital.C
- log_android()
: androidvmdstart.h
- LOG_BDIM_X
: msmpot_cuda_shortrng.cu
- LOG_BDIM_Y
: msmpot_cuda_shortrng.cu
- LOG_BDIM_Z
: msmpot_cuda_shortrng.cu
- LOG_REGS_X
: msmpot_cuda_shortrng.cu
- LOG_REGS_Y
: msmpot_cuda_shortrng.cu
- LOG_REGS_Z
: msmpot_cuda_shortrng.cu
- LOG_REGSIZE
: msmpot_cuda_shortrng.cu
- LOG_UNRL_Y
: msmpot_cuda_shortrng.cu
- logconsole_cb()
: MainFltkMenu.C
- logfile_cb()
: MainFltkMenu.C
- logoff_cb()
: MainFltkMenu.C
- loop_doc
: py_animate.C
- LT
: y.tab.h, AtomParser.C
- m -
- macosxvmdstart()
: macosxvmdstart.h
- madd_kernel()
: CUDABench.cu
- MAGIC_NUMBER
: pcreinternal.h
- magma_data
: ColorScaleTables.h
- main()
: vmdspheresprite.vert, vmdspheresprite.frag, vmdsphere.vert, vmdsphere.frag, vmd.vert, vmd.frag, vmdmain.C
- MAINDENSITYLOOP
: CUDAMDFF.cu
- MAINFLTKMENUHEIGHT
: MainFltkMenu.C
- MAINFLTKMENUWIDTH
: MainFltkMenu.C
- make_color_rgb4u()
: OptiXShaders.cu
- make_float2()
: CUDAOrbital.cu
- make_float3()
: CUDAQuickSurf.cu
- make_float4()
: CUDAOrbital.cu
- make_neighborlist()
: SpatialSearch.h, SpatialSearch.C
- make_neighborlist_sym()
: SpatialSearch.C
- make_spline_interpolation()
: utilities.h
- make_spline_Q_matrix()
: utilities.h
- make_spline_Q_matrix_noncontig()
: utilities.h
- make_tcl_atomsel()
: TclCommands.C
- malloc_from_CAVE_memory()
: CaveRoutines.h, CaveRoutines.C
- malloc_from_FreeVR_memory()
: FreeVRRoutines.h, FreeVRRoutines.C
- map_uniform_spacing()
: CUDAMDFF.cu
- mapA_ss
: MDFF.C
- mapA_sum
: MDFF.C
- mapB_ss
: MDFF.C
- mapB_sum
: MDFF.C
- MAPCLRS
: Scene.h
- MAPCOLOR
: Scene.h
- markIsoGrid()
: MeasureVolInterior.h, MeasureVolInterior.C
- mask()
: TclVoltool.C
- MASK
: msmpot_cuda_shortrng.cu
- MASK_REGS_X
: msmpot_cuda_shortrng.cu
- MASK_REGS_Y
: msmpot_cuda_shortrng.cu
- MASK_REGS_Z
: msmpot_cuda_shortrng.cu
- maskmode
: linenoise.c
- mat
: VMDQuat.C
- MAT
: OpenGLRenderer.C
- MAT_AMBIENT
: MaterialList.h
- MAT_DIFFUSE
: MaterialList.h
- mat_doc
: py_graphics.C
- MAT_MIRROR
: MaterialList.h
- MAT_OPACITY
: MaterialList.h
- MAT_OUTLINE
: MaterialList.h
- MAT_OUTLINEWIDTH
: MaterialList.h
- MAT_SHININESS
: MaterialList.h
- MAT_SPECULAR
: MaterialList.h
- MAT_TRANSMODE
: MaterialList.h
- match()
: pcre.c
- MATCH
: y.tab.h, AtomParser.C
- match_data
: pcreinternal.h
- match_ref()
: pcre.c
- material_doc
: py_molrep.C
- material_moddoc
: py_material.C
- MaterialProperty
: MaterialList.h
- MatrixFitRMS()
: fitrms.h, fitrms.c
- mats_doc
: py_graphics.C
- MATSWAP
: Matrix4.C
- MAX
: VolumetricData.C, Voltool.h, VolMapCreate.C, QuickSurf_AVX2.C, QuickSurf.C, QMData.C, MeasureRDF.C, Isosurface.C, CUDAMDFF.cu
- MAX_ALLOWABLE_ENERGY
: CUDAVolMapCreateILS.cu
- MAX_ATOM_BASIS_SZ
: OrbitalJIT.C, OpenCLOrbital.C, CUDAOrbital.cu
- MAX_ATOM_SZ
: OrbitalJIT.C, OpenCLOrbital.C, CUDAOrbital.cu
- MAX_ATOMCOLOR_CMD
: AtomColor.h
- MAX_ATOMPOS_SZ
: OrbitalJIT.C, OpenCLOrbital.C, CUDAOrbital.cu
- MAX_ATOMREP_CMD
: AtomRep.h
- MAX_ATOMREP_DATA
: AtomRep.h
- MAX_ATOMSHELL_SZ
: OrbitalJIT.C, OpenCLOrbital.C, CUDAOrbital.cu
- MAX_BASIS_SZ
: OrbitalJIT.C, OpenCLOrbital.C, CUDAOrbital.cu
- MAX_BIN_DEPTH
: msmpot_cuda_shortrng.cu
- MAX_BIN_VOLUME
: VolMapCreateILS.C
- MAX_BINOFFSETS
: CUDAVolMapCreateILS.cu
- MAX_BUTTONS
: P_Buttons.h
- MAX_CONFORMERS
: CUDAVolMapCreateILS.cu
- MAX_ENERGY
: VolMapCreate.C
- MAX_EXCLOFFSETS
: CUDAVolMapCreateILS.cu
- MAX_EXTRA_ATOMS
: VolMapCreateILS.C
- MAX_EXTRAS
: CUDAVolMapCreateILS.cu
- MAX_GRID_DIM
: msmpot_cuda_latcut.cu
- MAX_KERNEL_SIZE
: GaussianBlur.C
- MAX_MSG_SIZE
: Inform.h
- MAX_PORT
: MSMSInterface.C
- MAX_PROBES
: CUDAVolMapCreateILS.cu
- MAX_SHELL_SZ
: OrbitalJIT.C, OpenCLOrbital.C, CUDAOrbital.cu
- MAX_SPHERE_RES
: OpenGLRenderer.C
- MAX_THREADBLOCKS
: CUDAVolMapCreateILS.cu
- MAX_TIME_PER_KERNEL
: CUDAVolMapCreateILS.cu
- MAX_UNIQUE_TYPES
: VolMapCreateILS.C
- MAX_VDWPARMS
: CUDAVolMapCreateILS.cu
- MAX_WAVEF_SZ
: OrbitalJIT.C, OpenCLOrbital.C, CUDAOrbital.cu
- MAXATOMBONDS
: Atom.h
- MAXATOMS
: OpenCLVolCPotential.C, CUDAVolCPotential.cu
- MAXBIN
: CUDAMeasureRDF.cu
- MAXBONDERRORS
: BaseMolecule.C
- MAXCOLORS
: Scene.h
- MAXGRIDDIM
: SpatialSearch.C
- MAXLEVELS
: msmpot_cuda_latcut.cu
- MAXLOGF
: Orbital.C
- MAXLOOPS
: CUDAClearDevice.cu
- MAXNUMF
: Orbital.C
- MAXORDERCN
: MeasureSymmetry.h
- MAXRINGSIZE
: y.tab.h, AtomParser.C
- MAXSHELLCOUNT
: OpenCLOrbital.C, CUDAOrbital.cu
- MAXTHRDENS
: CUDAQuickSurf.cu
- MAXTHRSORTHASH
: CUDASpatialSearch.cu
- mcenter_doc
: py_trans.C
- mdff_cc()
: TclMDFF.h, TclMDFF.C
- mdff_sim()
: TclMDFF.h, TclMDFF.C
- MEASURE_ANGLE
: Measure.h
- measure_avpos()
: Measure.h, Measure.C
- measure_avpos_perresidue()
: Measure.C
- MEASURE_BOND
: Measure.h
- measure_center()
: Measure.h, Measure.C
- measure_center_perresidue()
: Measure.h, Measure.C
- measure_cluster()
: MeasureCluster.C, Measure.h
- measure_clustsize()
: MeasureCluster.C, Measure.h
- MEASURE_DIHED
: Measure.h
- measure_dipole()
: Measure.h, Measure.C
- MEASURE_DIST_CUSTOM
: Measure.h
- MEASURE_DIST_FITRMSD
: Measure.h
- MEASURE_DIST_RGYRD
: Measure.h
- MEASURE_DIST_RMSD
: Measure.h
- MEASURE_ELECT
: Measure.h
- measure_energy()
: Measure.h, Measure.C
- MEASURE_ERR_BADATOMID
: Measure.h
- MEASURE_ERR_BADCUTOFF
: Measure.h
- MEASURE_ERR_BADFRAMERANGE
: Measure.h
- MEASURE_ERR_BADORDERINDEX
: Measure.h
- MEASURE_ERR_BADWEIGHTNUM
: Measure.h
- MEASURE_ERR_BADWEIGHTPARM
: Measure.h
- MEASURE_ERR_BADWEIGHTSUM
: Measure.h
- MEASURE_ERR_GENERAL
: Measure.h
- MEASURE_ERR_MISMATCHEDCNT
: Measure.h
- MEASURE_ERR_MISMATCHEDMOLS
: Measure.h
- MEASURE_ERR_NOATOMS
: Measure.h
- MEASURE_ERR_NOCOM
: Measure.h
- MEASURE_ERR_NOFRAMEPOS
: Measure.h
- MEASURE_ERR_NOFRAMES
: Measure.h
- MEASURE_ERR_NOMINMAXCOORDS
: Measure.h
- MEASURE_ERR_NOMOLECULE
: Measure.h
- MEASURE_ERR_NONNUMBERPARM
: Measure.h
- MEASURE_ERR_NONZEROJACOBI
: Measure.h
- MEASURE_ERR_NORADII
: Measure.h
- MEASURE_ERR_NORGYR
: Measure.h
- MEASURE_ERR_NOSEL
: Measure.h
- MEASURE_ERR_NOTSUP
: Measure.h
- MEASURE_ERR_NOWEIGHT
: Measure.h
- MEASURE_ERR_REPEATEDATOM
: Measure.h
- MEASURE_ERR_RGYRMISMATCH
: Measure.h
- MEASURE_ERR_ZEROGRIDSIZE
: Measure.h
- measure_error()
: Measure.h, Measure.C
- measure_error_messages
: Measure.C
- measure_fit()
: Measure.h, Measure.C
- measure_geom()
: Measure.h, Measure.C
- measure_gofr()
: Measure.h, Measure.C
- measure_gofr_orth()
: Measure.C
- measure_hbonds()
: Measure.h, Measure.C
- MEASURE_IMPRP
: Measure.h
- measure_inertia()
: Measure.h, Measure.C
- measure_minmax()
: Measure.h, Measure.C
- measure_moddoc
: py_measure.C
- measure_move()
: Measure.h, Measure.C
- MEASURE_NOERR
: Measure.h
- MEASURE_NUM_DIST
: Measure.h
- measure_pbc2onc()
: MeasurePBC.C, Measure.h
- measure_pbc_neighbors()
: MeasurePBC.C, Measure.h
- measure_pointset_overlap()
: MeasureSymmetry.h, MeasureSymmetry.C
- measure_rdf()
: MeasureRDF.C, Measure.h
- measure_rgyr()
: Measure.h, Measure.C
- measure_rmsd()
: Measure.h, Measure.C
- measure_rmsd_perresidue()
: Measure.h, Measure.C
- measure_rmsd_qcp()
: MeasureQCP.C, Measure.h
- measure_rmsdmat_qcp()
: MeasureQCP.C, Measure.h
- measure_rmsdmat_qcp_ooc()
: MeasureQCP.C, Measure.h
- measure_rmsdmat_qcp_thread()
: MeasureQCP.C, CUDAMeasureQCP.cu
- measure_rmsf()
: Measure.h, Measure.C
- measure_rmsf_perresidue()
: Measure.h, Measure.C
- measure_sasa()
: Measure.h, Measure.C
- measure_sasa_perresidue()
: Measure.h, Measure.C
- measure_sasa_thread()
: Measure.C
- measure_sasalist()
: Measure.h, Measure.C
- measure_sumweights()
: Measure.h, Measure.C
- measure_surface()
: MeasureSurface.C, Measure.h
- measure_surface_int()
: MeasureSurface.C
- measure_trans_overlap()
: MeasureSymmetry.h, MeasureSymmetry.C
- MEASURE_VDW
: Measure.h
- measurecenter()
: CUDAFastPBC.cu
- measurecenter_fullmass()
: CUDAFastPBC.cu
- MEMCOALESCE
: OrbitalJIT.C, OpenCLOrbital.C, CUDAOrbital.cu
- MEMCOAMASK
: OpenCLOrbital.C, CUDAOrbital.cu
- MENU_ALWAYS_ON
: MainFltkMenu.h
- menu_cb()
: MainFltkMenu.C
- menu_moddoc
: py_menu.C
- MENU_NEED_SEL
: MainFltkMenu.h
- MENU_NEED_UNIQUE_SEL
: MainFltkMenu.h
- MenuBehavior
: MainFltkMenu.h
- MERGE_HILL_CLIMB
: ScaleSpaceFilter.h
- MERGE_POLICY
: ScaleSpaceFilter.h
- MERGE_WATERSHED_HILL_CLIMB
: ScaleSpaceFilter.h
- MERGE_WATERSHED_OVERLAP
: ScaleSpaceFilter.h
- methods
: py_trans.C, py_topo.C, py_render.C, py_numeric.C, py_mouse.C, py_molrep.C, py_molecule.C, py_menu.C, py_measure.C, py_material.C, py_imd.C, py_axes.C, py_animate.C
- MGMAXDATASIZE
: MoleculeGraphics.h
- midpoint()
: utilities.h
- MIN
: VolumetricData.C, Voltool.h, VolMapCreate.C, QuickSurf_AVX2.C, QuickSurf.C, QMData.C, MeasureVolInterior.C, MeasureRDF.C, Isosurface.C, CUDAMDFF.cu
- MIN_BIN_VOLUME
: VolMapCreateILS.C
- min_dist_with_pbc()
: Measure.C
- MIN_PORT
: MSMSInterface.C
- MIN_SPHERE_RES
: OpenGLRenderer.C
- MINATOMDIST
: MeasureSymmetry.C
- MINBLOCKDENS
: CUDAQuickSurf.cu
- MINBLOCKSORTHASH
: CUDASpatialSearch.cu
- MINLOGF
: Orbital.C
- minmax()
: py_atomsel.C
- minmax_1fv_aligned()
: utilities.h, util_simd.C
- minmax_3fv_aligned()
: utilities.h, util_simd.C
- minmax_doc
: py_atomsel.C
- minmax_selected_3fv_aligned()
: utilities.h, util_simd.C
- minmaxmean_1fv_aligned()
: utilities.h, util_simd.C
- MINSIZEOF
: MolFilePlugin.C
- miss_gradient_bg_sky_plane()
: OptiXShaders.cu
- miss_gradient_bg_sky_sphere()
: OptiXShaders.cu
- miss_solid_bg()
: OptiXShaders.cu
- MLCAT_CHAINS
: MoleculeList.h
- MLCAT_CONFORMATIONS
: MoleculeList.h
- MLCAT_ELEMENTS
: MoleculeList.h
- MLCAT_MOLECULES
: MoleculeList.h
- MLCAT_NAMES
: MoleculeList.h
- MLCAT_RESNAMES
: MoleculeList.h
- MLCAT_RESTYPES
: MoleculeList.h
- MLCAT_SEGNAMES
: MoleculeList.h
- MLCAT_SPECIAL
: MoleculeList.h
- MLCAT_SSTRUCT
: MoleculeList.h
- MLCAT_SURFACES
: MoleculeList.h
- MLCAT_TYPES
: MoleculeList.h
- MLIST_USE_HASH
: MoleculeList.h
- mlmode
: linenoise.c
- MLOG2EF
: QuickSurf_AVX2.C, QuickSurf.C, Orbital.C
- mm_mul()
: QMData.C
- mobile_listener_create()
: MobileInterface.C
- mobile_listener_destroy()
: MobileInterface.C
- mobile_listener_poll()
: MobileInterface.C
- mobile_usage()
: cmd_mobile.C
- MOD
: y.tab.h, AtomParser.C
- mode_doc
: py_mouse.C
- modrep_doc
: py_molrep.C
- module_doc
: py_selection.C
- mol_active_cb()
: MainFltkMenu.C
- mol_cancel_cb()
: MainFltkMenu.C
- mol_cancel_doc
: py_molecule.C
- mol_delete_cb()
: MainFltkMenu.C
- mol_delete_doc
: py_molecule.C
- mol_delete_ts_cb()
: MainFltkMenu.C
- mol_displayed_cb()
: MainFltkMenu.C
- mol_exists_doc
: py_molecule.C
- mol_fixed_cb()
: MainFltkMenu.C
- mol_from_id()
: py_graphics.C
- mol_fromsel_doc
: py_molecule.C
- mol_listall_doc
: py_molecule.C
- mol_load_doc
: py_molecule.C
- mol_moddoc
: py_molecule.C
- mol_name_doc
: py_molecule.C
- mol_new_doc
: py_molecule.C
- mol_num_doc
: py_molecule.C
- mol_numatoms_doc
: py_molecule.C
- mol_read_doc
: py_molecule.C
- mol_rename_cb()
: MainFltkMenu.C
- mol_rename_doc
: py_molecule.C
- mol_rot_doc
: py_trans.C
- mol_scale_doc
: py_trans.C
- mol_ssrecalc_doc
: py_molecule.C
- mol_top_cb()
: MainFltkMenu.C
- mol_trans_doc
: py_trans.C
- mol_write_doc
: py_molecule.C
- molchooser_cb()
: SaveTrajectoryFltkMenu.C
- molecule_menu_behavior
: MainFltkMenu.C
- molecule_tcl()
: TclMolInfo.C, TclCommands.h
- moleculerep_cb()
: ToolFltkMenu.C
- molid_doc
: py_atomsel.C
- molinfo_get()
: TclMolInfo.C
- molinfo_set()
: TclMolInfo.C
- mouse_cb()
: MainFltkMenu.C
- mouse_moddoc
: py_mouse.C
- mouse_usage()
: cmd_mouse.C
- move()
: TclVoltool.C
- move_doc
: py_atomsel.C
- MOVE_FACTOR
: FreeVRDisplayDevice.C
- move_light_cb()
: MainFltkMenu.C
- moveby()
: TclVoltool.C
- moveby_doc
: py_atomsel.C
- MPLCOLORSCALETABSIZE
: ColorScaleTables.h
- mrot_doc
: py_trans.C
- mscale_doc
: py_trans.C
- msgErr
: Inform.C, Inform.h
- msgInfo
: Inform.C, Inform.h
- msgWarn
: Inform.C, Inform.h
- msmain()
: MeasureSurface.C
- Msmpot
: msmpot.h
- Msmpot_check_params()
: msmpot_setup.c, msmpot_internal.h
- Msmpot_cleanup()
: msmpot_setup.c, msmpot_internal.h
- Msmpot_compute()
: msmpot_compute.c, msmpot.h
- Msmpot_compute_exact()
: msmpot.h
- Msmpot_compute_longrng()
: msmpot_internal.h, msmpot_compute.c
- Msmpot_compute_longrng_cubic()
: msmpot_internal.h, msmpot_cubic.c
- Msmpot_compute_shortrng_bin_hashing()
: msmpot_internal.h, msmpot_compute.c
- Msmpot_compute_shortrng_bin_neighborhood()
: msmpot_internal.h, msmpot_compute.c
- Msmpot_compute_shortrng_bins()
: msmpot_internal.h, msmpot_compute.c
- Msmpot_compute_shortrng_linklist()
: msmpot_internal.h, msmpot_compute.c
- Msmpot_configure()
: msmpot_setup.c, msmpot.h
- Msmpot_create()
: msmpot.h, msmpot.c
- Msmpot_cuda_cleanup()
: msmpot_cuda.h, msmpot_cuda.cu
- Msmpot_cuda_cleanup_latcut()
: msmpot_cuda_latcut.cu, msmpot_cuda.h
- Msmpot_cuda_cleanup_shortrng()
: msmpot_cuda_shortrng.cu, msmpot_cuda.h
- Msmpot_cuda_compute_latcut()
: msmpot_cuda_latcut.cu
- Msmpot_cuda_compute_shortrng()
: msmpot_cuda_shortrng.cu
- Msmpot_cuda_condense_qgrids()
: msmpot_cuda_latcut.cu
- Msmpot_cuda_create()
: msmpot_cuda.cu
- Msmpot_cuda_destroy()
: msmpot_cuda.cu
- Msmpot_cuda_expand_egrids()
: msmpot_cuda_latcut.cu
- Msmpot_cuda_setup()
: msmpot_cuda.cu
- Msmpot_cuda_setup_latcut()
: msmpot_cuda_latcut.cu, msmpot_cuda.h
- Msmpot_cuda_setup_shortrng()
: msmpot_cuda_shortrng.cu, msmpot_cuda.h
- Msmpot_destroy()
: msmpot.h, msmpot.c
- MSMPOT_ERROR_ASSERT
: msmpot.h
- MSMPOT_ERROR_CUDA_DEVREQ
: msmpot.h
- MSMPOT_ERROR_CUDA_KERNEL
: msmpot.h
- MSMPOT_ERROR_CUDA_MALLOC
: msmpot.h
- MSMPOT_ERROR_CUDA_MEMCPY
: msmpot.h
- MSMPOT_ERROR_CUDA_SUPPORT
: msmpot.h
- MSMPOT_ERROR_MALLOC
: msmpot.h
- MSMPOT_ERROR_PARAM
: msmpot.h
- Msmpot_error_string()
: msmpot.h, msmpot.c
- MSMPOT_ERROR_SUPPORT
: msmpot.h
- MSMPOT_ERROR_UNKNOWN
: msmpot.h
- MSMPOT_INTERP_CUBIC
: msmpot.h
- MSMPOT_INTERP_NONIC
: msmpot.h
- MSMPOT_INTERP_NONIC4
: msmpot.h
- MSMPOT_INTERP_QUINTIC
: msmpot.h
- MSMPOT_INTERP_QUINTIC2
: msmpot.h
- MSMPOT_INTERP_SEPTIC
: msmpot.h
- MSMPOT_INTERP_SEPTIC3
: msmpot.h
- MSMPOT_INTERPMAX
: msmpot.h
- Msmpot_set_defaults()
: msmpot_setup.c, msmpot_internal.h
- Msmpot_setup()
: msmpot_setup.c, msmpot_internal.h
- MSMPOT_SPLIT_TAYLOR2
: msmpot.h
- MSMPOT_SPLIT_TAYLOR3
: msmpot.h
- MSMPOT_SPLIT_TAYLOR4
: msmpot.h
- MSMPOT_SPLIT_TAYLOR5
: msmpot.h
- MSMPOT_SPLIT_TAYLOR6
: msmpot.h
- MSMPOT_SPLIT_TAYLOR7
: msmpot.h
- MSMPOT_SPLIT_TAYLOR8
: msmpot.h
- MSMPOT_SPLITMAX
: msmpot.h
- MSMPOT_SUCCESS
: msmpot.h
- Msmpot_use_cuda()
: msmpot.h, msmpot.c
- MsmpotRetcode
: msmpot.h
- MsmpotRetcode_t
: msmpot.h
- mtrans_doc
: py_trans.C
- mtx
: MeasureVolInterior.C, MDFF.C
- MULT
: y.tab.h, AtomParser.C
- multiply()
: Voltool.h, Voltool.C
- MUST_HAVE
: TclGraphics.C
- myCreateWindow()
: Win32OpenGLDisplayDevice.C
- myfit2()
: Measure.C
- myfit3()
: Measure.C
- myintptrtype
: util_simd.C, Timestep.C
- myisnan()
: Voltool.h
- MyMatrixFitRMS()
: MeasureCluster.C
- myrt_rand()
: OptiXShaders.cu
- MYRT_RAND_MAX
: OptiXShaders.cu
- MYRT_RAND_MAX_INV
: OptiXShaders.cu
- MYSGN
: DrawMolItemVolume.C, DrawMolItemQuickSurf.C, DrawMolItemOrbital.C
- n -
- n
: nr_jacobi.C
- NameListCharPtr
: NameList.h
- NameListFloatPtr
: NameList.h
- NameListIntPtr
: NameList.h
- NameListStringPtr
: NameList.h
- NAN
: VolumetricData.C
- NBLOCK
: CUDAMeasureRDF.cu
- NBLOCKHIST
: CUDAMeasureRDF.cu
- NbrList
: msmpot_cuda_shortrng.cu
- NBRLIST_MAXLEN
: msmpot_cuda.h
- NbrListLen
: msmpot_cuda_shortrng.cu
- NCONFPERLOOP
: CUDAVolMapCreateILS.cu
- NCONSTBLOCK
: CUDAMeasureRDF.cu
- NCUDABLOCKS
: CUDAMeasureRDF.cu
- NE
: y.tab.h, AtomParser.C
- nearclip_cb()
: DisplayFltkMenu.C
- NEAREST
: y.tab.h, AtomParser.C
- need_args()
: P_SensorConfig.C
- neighbor_offsets_d
: CUDAWatershed.cu
- NELEMS
: msmpot.c
- NEQ
: y.tab.h, AtomParser.C
- newvol
: MDFF.C
- next_cb()
: MainFltkMenu.C
- next_doc
: py_animate.C
- nextpower2()
: VolumeTexture.C
- NGE
: y.tab.h, AtomParser.C
- nGroups_d
: CUDASegmentation.cu
- NGT
: y.tab.h, AtomParser.C
- ninesixteentone
: OpenGLStipples.h
- NLE
: y.tab.h, AtomParser.C
- NLISTSIZE
: NameList.h
- NLT
: y.tab.h, AtomParser.C
- NNE
: y.tab.h, AtomParser.C
- NOMINMAX
: ParseTree.C
- nonassoc
: y.tab.h, AtomParser.C
- nopkernel()
: CUDABench.cu
- norm()
: utilities.h, utilities.C
- normal_atom_coord()
: Measure.h, Measure.C
- normalize3d()
: MeasureCluster.C, fitrms.c
- normalize_pmap()
: MeasureVolInterior.h, MeasureVolInterior.C
- NOSKIP_IDENTICAL
: MeasureSymmetry.h
- NOT
: y.tab.h, AtomParser.C
- Nout
: MeasureVolInterior.C
- NPTS
: Measure.C
- NPY_NO_DEPRECATED_API
: py_numeric.C
- nr_pte_entries
: PeriodicTable.C
- NTHREADS
: CUDAMarchingCubes.cu
- NTHREADSPERBLOCK
: CUDAVolMapCreateILS.cu
- NTPB_TIMES_NCPL
: CUDAVolMapCreateILS.cu
- NTPBSHIFT
: CUDAVolMapCreateILS.cu
- NULL
: utilities.h
- nullregion()
: Win32Joystick.C
- num
: AtomSel.C
- NUM_DISPLAY_TYPES
: vmd.C
- num_doc
: py_molrep.C
- NUM_MLCAT
: MoleculeList.h
- NUM_N
: CUDASegmentation.cu
- num_scalemethods
: Scene.C
- NUM_TITLE_TYPES
: vmd.C
- num_volumetric_doc
: py_molecule.C
- numframes_doc
: py_molecule.C
- NUMPOINTGROUPS
: MeasureSymmetry.C
- numprimefactors()
: MeasureSymmetry.C
- numvoxels
: MeasureVolInterior.C, MDFF.C
- NVENCMGR_ERROR
: NVENCMgr.h
- NVENCMGR_SUCCESS
: NVENCMgr.h
- nx_ny_offset
: ScaleSpaceFilter.C
- nx_ny_offset_d
: CUDAWatershed.cu
- nx_nz_offset
: ScaleSpaceFilter.C
- nx_nz_offset_d
: CUDAWatershed.cu
- nx_offset
: ScaleSpaceFilter.C
- nx_offset_d
: CUDAWatershed.cu
- nx_py_offset
: ScaleSpaceFilter.C
- nx_py_offset_d
: CUDAWatershed.cu
- nx_pz_offset
: ScaleSpaceFilter.C
- nx_pz_offset_d
: CUDAWatershed.cu
- ny_nz_offset
: ScaleSpaceFilter.C
- ny_nz_offset_d
: CUDAWatershed.cu
- ny_offset
: ScaleSpaceFilter.C
- ny_offset_d
: CUDAWatershed.cu
- ny_pz_offset
: ScaleSpaceFilter.C
- ny_pz_offset_d
: CUDAWatershed.cu
- nz_offset
: ScaleSpaceFilter.C
- nz_offset_d
: CUDAWatershed.cu
- o -
- obj_fastpbc()
: TclFastPBC.C, TclCommands.h
- obj_getdoublearray()
: TclVec.C
- obj_graphlayout()
: TclGraphLayout.C, TclCommands.h
- obj_mdff_cc()
: TclMDFF.C, TclCommands.h
- obj_measure()
: TclMeasure.C, TclCommands.h
- obj_segmentation()
: TclSegmentation.C, TclCommands.h
- obj_transabout()
: TclVec.C
- obj_transmult()
: TclVec.C
- obj_transvec()
: TclVec.C
- obj_transvecinv()
: TclVec.C
- obj_vecadd()
: TclVec.C
- obj_veclength()
: TclVec.C
- obj_vecmean()
: TclVec.C
- obj_vecscale()
: TclVec.C
- obj_vecstddev()
: TclVec.C
- obj_vecsub()
: TclVec.C
- obj_vecsum()
: TclVec.C
- obj_vectrans()
: TclVec.C
- obj_volmap()
: TclVolMap.C, TclCommands.h
- obj_voltool()
: TclVoltool.C, TclCommands.h
- occthrparms
: CUDAVolMapCreateILS.cu
- OCTAHEDRON
: MeasureSymmetry.C
- octahedron()
: VolMapCreateILS.C
- OF
: y.tab.h, AtomParser.C
- offset_cb()
: ToolFltkMenu.C
- offsetof
: pcreinternal.h
- offsetreset_cb()
: GeometryFltkMenu.C
- offsetTriangleVertices()
: CUDAMarchingCubes.cu
- oglcolor
: vmdspheresprite.vert, vmdspheresprite.frag, vmdsphere.vert, vmdsphere.frag, vmd.vert, vmd.frag
- OGLERR
: OpenGLRenderer.C
- oglnormal
: vmd.vert, vmd.frag
- OK
: msmpot_cuda.cu, msmpot_cubic.c
- once_doc
: py_animate.C
- onoffstr()
: OptiXRenderer.C
- OP_ALT
: pcreinternal.h
- OP_ANY
: pcreinternal.h
- OP_ASSERT
: pcreinternal.h
- OP_ASSERT_NOT
: pcreinternal.h
- OP_ASSERTBACK
: pcreinternal.h
- OP_ASSERTBACK_NOT
: pcreinternal.h
- OP_BRA
: pcreinternal.h
- OP_BRAMINZERO
: pcreinternal.h
- OP_BRAZERO
: pcreinternal.h
- OP_CHARS
: pcreinternal.h
- OP_CIRC
: pcreinternal.h
- OP_CLASS
: pcreinternal.h
- OP_COND
: pcreinternal.h
- OP_CREF
: pcreinternal.h
- OP_CRMINPLUS
: pcreinternal.h
- OP_CRMINQUERY
: pcreinternal.h
- OP_CRMINRANGE
: pcreinternal.h
- OP_CRMINSTAR
: pcreinternal.h
- OP_CRPLUS
: pcreinternal.h
- OP_CRQUERY
: pcreinternal.h
- OP_CRRANGE
: pcreinternal.h
- OP_CRSTAR
: pcreinternal.h
- OP_DIGIT
: pcreinternal.h
- OP_DOLL
: pcreinternal.h
- OP_END
: pcreinternal.h
- OP_EOD
: pcreinternal.h
- OP_EODN
: pcreinternal.h
- OP_EXACT
: pcreinternal.h
- OP_KET
: pcreinternal.h
- OP_KETRMAX
: pcreinternal.h
- OP_KETRMIN
: pcreinternal.h
- OP_MINPLUS
: pcreinternal.h
- OP_MINQUERY
: pcreinternal.h
- OP_MINSTAR
: pcreinternal.h
- OP_MINUPTO
: pcreinternal.h
- OP_NOT
: pcreinternal.h
- OP_NOT_DIGIT
: pcreinternal.h
- OP_NOT_WHITESPACE
: pcreinternal.h
- OP_NOT_WORD_BOUNDARY
: pcreinternal.h
- OP_NOT_WORDCHAR
: pcreinternal.h
- OP_NOTEXACT
: pcreinternal.h
- OP_NOTMINPLUS
: pcreinternal.h
- OP_NOTMINQUERY
: pcreinternal.h
- OP_NOTMINSTAR
: pcreinternal.h
- OP_NOTMINUPTO
: pcreinternal.h
- OP_NOTPLUS
: pcreinternal.h
- OP_NOTQUERY
: pcreinternal.h
- OP_NOTSTAR
: pcreinternal.h
- OP_NOTUPTO
: pcreinternal.h
- OP_ONCE
: pcreinternal.h
- OP_OPT
: pcreinternal.h
- OP_PLUS
: pcreinternal.h
- OP_QUERY
: pcreinternal.h
- OP_REF
: pcreinternal.h
- OP_REVERSE
: pcreinternal.h
- OP_SOD
: pcreinternal.h
- OP_STAR
: pcreinternal.h
- OP_TYPEEXACT
: pcreinternal.h
- OP_TYPEMINPLUS
: pcreinternal.h
- OP_TYPEMINQUERY
: pcreinternal.h
- OP_TYPEMINSTAR
: pcreinternal.h
- OP_TYPEMINUPTO
: pcreinternal.h
- OP_TYPEPLUS
: pcreinternal.h
- OP_TYPEQUERY
: pcreinternal.h
- OP_TYPESTAR
: pcreinternal.h
- OP_TYPEUPTO
: pcreinternal.h
- OP_UPTO
: pcreinternal.h
- OP_WHITESPACE
: pcreinternal.h
- OP_WORD_BOUNDARY
: pcreinternal.h
- OP_WORDCHAR
: pcreinternal.h
- openclenergythread()
: OpenCLVolCPotential.C
- openclorbitalthread()
: OpenCLOrbital.C
- OPENGL_CACHE_MODES
: OpenGLRenderer.h
- OPENGL_CACHE_OFF
: OpenGLRenderer.h
- OPENGL_CACHE_ON
: OpenGLRenderer.h
- OPENGL_RENDER_ACROBAT3D
: OpenGLRenderer.h
- OPENGL_RENDER_GLSL
: OpenGLRenderer.h
- OPENGL_RENDER_MODES
: OpenGLRenderer.h
- OPENGL_RENDER_NORMAL
: OpenGLRenderer.h
- OPENGL_STEREO_ABOVEBELOW
: OpenGLRenderer.h
- OPENGL_STEREO_ANAGLYPH
: OpenGLRenderer.h
- OPENGL_STEREO_HDTVSIDE
: OpenGLRenderer.h
- OPENGL_STEREO_LEFT
: OpenGLRenderer.h
- OPENGL_STEREO_MODES
: OpenGLRenderer.h
- OPENGL_STEREO_OFF
: OpenGLRenderer.h
- OPENGL_STEREO_QUADBUFFER
: OpenGLRenderer.h
- OPENGL_STEREO_RIGHT
: OpenGLRenderer.h
- OPENGL_STEREO_SIDE
: OpenGLRenderer.h
- OPENGL_STEREO_STENCIL_CHECKERBOARD
: OpenGLRenderer.h
- OPENGL_STEREO_STENCIL_COLUMNS
: OpenGLRenderer.h
- OPENGL_STEREO_STENCIL_ROWS
: OpenGLRenderer.h
- OpenWin32Connection()
: Win32OpenGLDisplayDevice.C
- operator *()
: OptiXShaders.h, MeasureSurface.C, CUDAQuickSurf.cu, CUDAOrbital.cu, CUDAMarchingCubes.cu, colvarvalue.C
- operator *=()
: CUDAOrbital.cu
- operator+()
: JString.C, CUDAOrbital.cu, CUDAMDFF.cu, CUDAMarchingCubes.cu, colvarvalue.C
- operator+=()
: CUDAQuickSurf.cu, CUDAOrbital.cu, CUDAMDFF.cu
- operator-()
: CUDAOrbital.cu, CUDAMarchingCubes.cu, colvarvalue.C
- operator/()
: MeasureSurface.C, colvarvalue.C
- operator<<()
: colvarvalue.C, colvartypes.C, colvarmodule.h, colvarbias_meta.C
- operator>>()
: colvarvalue.C, colvartypes.C, colvarparse.C, colvarmodule.h
- operator|()
: colvarparse.h
- OptiXPrintRayStats()
: OptiXRenderer.C
- OptiXWriteImage()
: OptiXRenderer.C
- OR
: y.tab.h, AtomParser.C
- ORBITAL_JIT_CUDA
: OrbitalJIT.h
- orbital_jit_generate()
: OrbitalJIT.h, OrbitalJIT.C
- ORBITAL_JIT_OPENCL
: OrbitalJIT.h
- orbitalthread()
: Orbital.C
- ORDER
: RadianceDisplayDevice.C, ArtDisplayDevice.C
- orig_termios
: linenoise.c
- ORT_AS_BUILD_MEM_HEURISTIC
: OptiXRenderer.C
- ORT_RAY_STEP
: OptiXShaders.cu
- ORT_RAY_STEP2
: OptiXShaders.cu
- ORT_TIME_COMBINE_MAX
: OptiXShaders.cu
- ORT_TIME_NORMALIZATION
: OptiXShaders.cu
- ORT_TRANS_USE_INCIDENT
: OptiXShaders.cu
- ORT_USE_HW_TRIANGLES
: OptiXRenderer.C
- ORT_USE_RAY_STEP
: OptiXShaders.cu
- ORT_USE_SPHERES_HEARNBAKER
: OptiXShaders.cu
- ORT_USE_TEMPLATE_SHADERS
: OptiXShaders.h, OptiXRenderer.h
- orthogonal()
: MeasureSymmetry.C
- orthonormal_basis()
: MeasurePBC.C
- ORTMTABSZ
: OptiXRenderer.h
- OUTLINE_off
: OptiXShaders.cu
- OUTLINE_on
: OptiXShaders.cu
- overlap_f()
: QMData.C
- overlap_I()
: QMData.C
- overlap_S12()
: QMData.C
- overlap_S12_contracted()
: QMData.C
- OVERLAPCUTOFF
: MeasureSymmetry.C
- p -
- P_SHELL
: QMData.h, OrbitalJIT.C, Orbital.C, OpenCLOrbital.C, CUDAOrbital.cu
- PACKET_BUTTON
: MobileInterface.C
- PACKET_CONNECT
: MobileInterface.C
- PACKET_DISCONNECT
: MobileInterface.C
- PACKET_HEARTBEAT
: MobileInterface.C
- PACKET_ORIENT
: MobileInterface.C
- PACKET_TOUCH
: MobileInterface.C
- PADMASK
: CUDAVolMapCreateILS.cu
- paper_bibtex_
: colvarmodule_refs.h
- paper_count_
: colvarmodule_refs.h
- paper_url_
: colvarmodule_refs.h
- PARSE_FOR_DEVICE
: P_SensorConfig.C
- PARSE_FOR_NAMES
: P_SensorConfig.C
- parse_frames()
: DrawMolItem.C
- parse_minmax_args()
: TclVolMap.C
- parse_timestep()
: py_commands.h, py_commands.C
- parse_two_selections_return_weight()
: py_atomsel.C
- parse_weight()
: py_atomsel.C
- parseAtomselMacros()
: vmd.C
- parseColorDefs()
: vmd.C
- PARSEERROR
: y.tab.h, AtomParser.C
- parseMaterialDefs()
: vmd.C
- parseRestypes()
: vmd.C
- PATHSEP
: colvarbias_meta.C
- pause_doc
: py_imd.C, py_animate.C
- PBC_NONE
: VMDDisplayList.h
- PBC_NOSELF
: VMDDisplayList.h
- PBC_OPX
: VMDDisplayList.h
- PBC_OPY
: VMDDisplayList.h
- PBC_OPZ
: VMDDisplayList.h
- PBC_X
: VMDDisplayList.h
- PBC_Y
: VMDDisplayList.h
- PBC_Z
: VMDDisplayList.h
- PBWITHIN
: y.tab.h, AtomParser.C
- pcre
: pcre.h
- PCRE_ANCHORED
: pcre.h
- PCRE_CASELESS
: pcre.h
- pcre_default_tables
: pcretables.h
- PCRE_DOLLAR_ENDONLY
: pcre.h
- PCRE_DOTALL
: pcre.h
- PCRE_ERROR_BADMAGIC
: pcre.h
- PCRE_ERROR_BADOPTION
: pcre.h
- PCRE_ERROR_NOMATCH
: pcre.h
- PCRE_ERROR_NOMEMORY
: pcre.h
- PCRE_ERROR_NOSUBSTRING
: pcre.h
- PCRE_ERROR_NULL
: pcre.h
- PCRE_ERROR_UNKNOWN_NODE
: pcre.h
- PCRE_EXTENDED
: pcre.h
- PCRE_EXTRA
: pcre.h
- pcre_extra
: pcre.h
- PCRE_FIRSTSET
: pcreinternal.h
- PCRE_IMS
: pcreinternal.h
- PCRE_INGROUP
: pcreinternal.h
- PCRE_MULTILINE
: pcre.h
- PCRE_NOTBOL
: pcre.h
- PCRE_NOTEOL
: pcre.h
- PCRE_STARTLINE
: pcreinternal.h
- PCRE_STUDY_MAPPED
: pcreinternal.h
- PCRE_UNGREEDY
: pcre.h
- PCRE_VERSION
: pcreinternal.h
- pdb_field_str2enum()
: colvarproxy_vmd.C
- perm
: VMDQuat.C
- PERPENDICULAR_AXIS
: MeasureSymmetry.h
- PFDHasStereo()
: Win32OpenGLDisplayDevice.C
- pgdefinitions
: MeasureSymmetry.C
- phantom_xyz()
: CUDAMeasureRDF.cu
- PHI_FACTORED
: msmpot_cubic.c
- PHONETACKER_H
: PhoneTracker.h
- PHONG_DIVISOR
: POV3DisplayDevice.C
- PI
: colvartypes.h
- PI_F
: GaussianBlur.C
- Plane
: MeasureSymmetry.h
- plasma_data
: ColorScaleTables.h
- plugincmp()
: PluginMgr.C
- PluginList
: PluginMgr.h
- pmap
: MeasureVolInterior.C
- PNVENCODEAPICREATEINSTANCE
: NVENCMgr.h, NVENCMgr.C
- point_doc
: py_graphics.C
- POINTGROUP_C1
: MeasureSymmetry.C
- POINTGROUP_CI
: MeasureSymmetry.C
- POINTGROUP_CINFV
: MeasureSymmetry.C
- POINTGROUP_CN
: MeasureSymmetry.C
- POINTGROUP_CNH
: MeasureSymmetry.C
- POINTGROUP_CNV
: MeasureSymmetry.C
- POINTGROUP_CS
: MeasureSymmetry.C
- POINTGROUP_DINFH
: MeasureSymmetry.C
- POINTGROUP_DN
: MeasureSymmetry.C
- POINTGROUP_DND
: MeasureSymmetry.C
- POINTGROUP_DNH
: MeasureSymmetry.C
- POINTGROUP_I
: MeasureSymmetry.C
- POINTGROUP_IH
: MeasureSymmetry.C
- POINTGROUP_KH
: MeasureSymmetry.C
- POINTGROUP_O
: MeasureSymmetry.C
- POINTGROUP_OH
: MeasureSymmetry.C
- POINTGROUP_S2N
: MeasureSymmetry.C
- POINTGROUP_T
: MeasureSymmetry.C
- POINTGROUP_TD
: MeasureSymmetry.C
- POINTGROUP_TH
: MeasureSymmetry.C
- POINTGROUP_UNKNOWN
: MeasureSymmetry.C
- POINTSPHERE
: DispCmds.h
- poisson_sample_on_sphere()
: utilities.h, utilities.C
- position_cb()
: ToolFltkMenu.C
- positionscale_cb()
: ToolFltkMenu.C
- POT_CONV
: VolMapCreate.C
- POVRAY_BRAIN_DAMAGE_WORKAROUND
: POV3DisplayDevice.C
- POVRAY_SCALEHACK
: POV3DisplayDevice.C
- PRECOMP_1
: msmpot_cuda_latcut.cu
- PRELIMINARY_C2
: MeasureSymmetry.C
- prepare_texture_coordinates()
: DrawMolItemVolume.C
- preserve_window()
: VMDTkinterMenu.C
- prev_cb()
: MainFltkMenu.C
- prev_doc
: py_animate.C
- PRINCIPAL_AXIS
: MeasureSymmetry.h
- print_arep_summary()
: cmd_mol.C
- print_atom_info()
: PickList.C
- print_Matrix4()
: Matrix4.h, Matrix4.C
- print_mol_summary()
: cmd_mol.C
- print_xyz()
: utilities.h, utilities.C
- proc_features()
: colvarscript_commands_bias.h
- process_pmap()
: MeasureVolInterior.h, MeasureVolInterior.C
- PROFILE_INITIALIZE
: ProfileHooks.h
- PROFILE_MAIN_THREAD
: ProfileHooks.h
- PROFILE_MARK
: ProfileHooks.h
- PROFILE_NAME_THREAD
: ProfileHooks.h
- PROFILE_POP_RANGE
: ProfileHooks.h
- PROFILE_PUSH_RANGE
: ProfileHooks.h
- PROFILE_RANGE
: ProfileHooks.h
- PROFILE_START
: ProfileHooks.h
- PROFILE_STOP
: ProfileHooks.h
- proj_cb()
: MainFltkMenu.C
- prolongation()
: msmpot_cubic.c
- PROTEINVOXEL
: MeasureVolInterior.h
- pte_label
: PeriodicTable.C
- pte_mass
: PeriodicTable.C
- pte_vdw_radius
: PeriodicTable.C
- ptrstack_compact()
: ptrstack.h, ptrstack.c
- ptrstack_create()
: ptrstack.h, ptrstack.c
- ptrstack_destroy()
: ptrstack.h, ptrstack.c
- ptrstack_empty()
: ptrstack.h, ptrstack.c
- ptrstack_pop()
: ptrstack.h, ptrstack.c
- ptrstack_popall()
: ptrstack.h, ptrstack.c
- ptrstack_push()
: ptrstack.h, ptrstack.c
- PtrStackHandle
: ptrstack.h
- PUBLIC_EXEC_OPTIONS
: pcreinternal.h
- PUBLIC_OPTIONS
: pcreinternal.h
- PUBLIC_STUDY_OPTIONS
: pcreinternal.h
- PUSH_QUEUE
: DrawMolItem2.C
- putbyte()
: ImageIO.C
- putint()
: ImageIO.C
- putshort()
: ImageIO.C
- px_ny_offset
: ScaleSpaceFilter.C
- px_ny_offset_d
: CUDAWatershed.cu
- px_nz_offset
: ScaleSpaceFilter.C
- px_nz_offset_d
: CUDAWatershed.cu
- px_offset
: ScaleSpaceFilter.C
- px_offset_d
: CUDAWatershed.cu
- px_py_offset
: ScaleSpaceFilter.C
- px_py_offset_d
: CUDAWatershed.cu
- px_pz_offset
: ScaleSpaceFilter.C
- px_pz_offset_d
: CUDAWatershed.cu
- py_activate()
: py_animate.C
- py_add()
: py_material.C
- py_addmacro()
: py_selection.C
- py_addmenu()
: py_menu.C
- py_addrep()
: py_molrep.C
- py_allmacros()
: py_selection.C
- py_anim_goto()
: py_animate.C
- py_array_from_obj()
: py_commands.h, py_commands.C
- py_atomselect()
: py_numeric.C
- py_categories()
: py_color.C
- py_change()
: py_material.C
- py_color()
: py_graphics.C
- py_cone()
: py_graphics.C
- py_copyunitcell()
: py_imd.C
- py_cylinder()
: py_graphics.C
- py_delete()
: py_graphics.C
- py_delframe()
: py_molecule.C
- py_delmacro()
: py_selection.C
- py_delrep()
: py_molrep.C
- py_dgtrans()
: py_trans.C
- py_drotate()
: py_trans.C
- py_dscale()
: py_trans.C
- py_dstrans()
: py_trans.C
- py_dtranslate()
: py_trans.C
- py_dupframe()
: py_molecule.C
- py_evaltcl()
: py_vmd.C
- py_fit()
: py_atomsel.C
- py_fix()
: py_trans.C
- py_forward()
: py_animate.C
- py_get()
: py_display.C
- py_get_accessions()
: py_molecule.C
- py_get_autoupdate()
: py_molrep.C
- py_get_center()
: py_trans.C
- py_get_color()
: py_molrep.C
- py_get_colorlist()
: py_color.C
- py_get_colormap()
: py_color.C
- py_get_colors()
: py_color.C
- py_get_colorupdate()
: py_molrep.C
- py_get_databases()
: py_molecule.C
- py_get_filenames()
: py_molecule.C
- py_get_filetypes()
: py_molecule.C
- py_get_frame()
: py_molecule.C
- py_get_location()
: py_axes.C
- py_get_material()
: py_molrep.C
- py_get_periodic()
: py_molecule.C
- py_get_physical_time()
: py_molecule.C
- py_get_remarks()
: py_molecule.C
- py_get_repname()
: py_molrep.C
- py_get_rotation()
: py_trans.C
- py_get_scale()
: py_trans.C
- py_get_scaleminmax()
: py_molrep.C
- py_get_selection()
: py_molrep.C
- py_get_smoothing()
: py_molrep.C
- py_get_style()
: py_molrep.C
- py_get_top()
: py_molecule.C
- py_get_trans()
: py_trans.C
- py_get_vector()
: py_commands.h, py_commands.C
- py_get_visible()
: py_molrep.C, py_molecule.C
- py_getmacro()
: py_selection.C
- py_hbonds()
: py_atomsel.C
- py_hbonds_doc
: py_atomsel.C
- py_imdconnect()
: py_imd.C
- py_imdconnected()
: py_imd.C
- py_imddetach()
: py_imd.C
- py_imdkeep()
: py_imd.C
- py_imdkill()
: py_imd.C
- py_imdpause()
: py_imd.C
- py_imdtransfer()
: py_imd.C
- py_info()
: py_graphics.C
- py_initializers
: py_commands.h, py_commands.C
- py_is_active()
: py_animate.C
- py_is_fixed()
: py_trans.C
- py_is_shown()
: py_trans.C
- py_label_add()
: py_label.C
- py_label_delete()
: py_label.C
- py_label_getvalues()
: py_label.C
- py_label_textsize()
: py_label.C
- py_label_textthickness()
: py_label.C
- py_label_visible()
: py_label.C
- py_line()
: py_graphics.C
- py_list_attrs()
: py_atomsel.C
- py_listall()
: py_render.C, py_material.C, py_label.C, py_graphics.C
- py_location()
: py_menu.C
- py_loop()
: py_animate.C
- py_matdelete()
: py_material.C
- py_material()
: py_graphics.C
- py_materials()
: py_graphics.C
- py_measure_angle()
: py_measure.C
- py_measure_bond()
: py_measure.C
- py_measure_dihed()
: py_measure.C
- py_menushow()
: py_menu.C
- py_modrep()
: py_molrep.C
- py_mol_add_volumetric()
: py_molecule.C
- py_mol_cancel()
: py_molecule.C
- py_mol_del_volumetric()
: py_molecule.C
- py_mol_delete()
: py_molecule.C
- py_mol_drm_volumetric()
: py_molecule.C
- py_mol_exists()
: py_molecule.C
- py_mol_fromsel()
: py_molecule.C
- py_mol_get_volumetric()
: py_molecule.C
- py_mol_listall()
: py_molecule.C
- py_mol_load()
: py_molecule.C
- py_mol_name()
: py_molecule.C
- py_mol_new()
: py_molecule.C
- py_mol_num()
: py_molecule.C
- py_mol_num_volumetric()
: py_molecule.C
- py_mol_numatoms()
: py_molecule.C
- py_mol_read()
: py_molecule.C
- py_mol_rename()
: py_molecule.C
- py_mol_ssrecalc()
: py_molecule.C
- py_mol_write()
: py_molecule.C
- py_molrep_num()
: py_molrep.C
- py_mousemode()
: py_mouse.C
- py_move()
: py_atomsel.C
- py_moveby()
: py_atomsel.C
- py_next()
: py_animate.C
- py_numframes()
: py_molecule.C
- py_nz_offset
: ScaleSpaceFilter.C
- py_nz_offset_d
: CUDAWatershed.cu
- py_offset
: ScaleSpaceFilter.C
- py_offset_d
: CUDAWatershed.cu
- py_once()
: py_animate.C
- py_pause()
: py_animate.C
- py_point()
: py_graphics.C
- py_prev()
: py_animate.C
- py_pz_offset
: ScaleSpaceFilter.C
- py_pz_offset_d
: CUDAWatershed.cu
- py_registermenu()
: py_menu.C
- py_rename()
: py_material.C
- py_render()
: py_render.C
- py_repindex()
: py_molrep.C
- py_replace()
: py_graphics.C
- py_reset_scaleminmax()
: py_molrep.C
- py_resetview()
: py_trans.C
- py_reverse()
: py_animate.C
- py_rgyr()
: py_atomsel.C
- py_rmsd()
: py_atomsel.C
- py_rmsd_q()
: py_atomsel.C
- py_rmsdmat_q()
: py_atomsel.C
- py_rmsdperresidue()
: py_atomsel.C
- py_rmsf()
: py_atomsel.C
- py_rmsfperresidue()
: py_atomsel.C
- py_rock()
: py_animate.C
- py_rotate()
: py_trans.C
- py_scale()
: py_trans.C
- py_scale_max()
: py_color.C
- py_scale_method()
: py_color.C
- py_scale_methods()
: py_color.C
- py_scale_midpoint()
: py_color.C
- py_scale_min()
: py_color.C
- py_scale_posterize()
: py_color.C
- py_scale_reverse()
: py_color.C
- py_sendforces()
: py_imd.C
- py_set()
: py_display.C
- py_set_autoupdate()
: py_molrep.C
- py_set_center()
: py_trans.C
- py_set_colorid()
: py_color.C
- py_set_colormap()
: py_color.C
- py_set_colors()
: py_color.C
- py_set_colorupdate()
: py_molrep.C
- py_set_default()
: py_material.C
- py_set_frame()
: py_molecule.C
- py_set_location()
: py_axes.C
- py_set_periodic()
: py_molecule.C
- py_set_physical_time()
: py_molecule.C
- py_set_rotation()
: py_trans.C
- py_set_scale()
: py_trans.C, py_color.C
- py_set_scaleminmax()
: py_molrep.C
- py_set_smoothing()
: py_molrep.C
- py_set_top()
: py_molecule.C
- py_set_trans()
: py_trans.C
- py_set_visible()
: py_molrep.C, py_molecule.C
- py_settings()
: py_material.C
- py_show()
: py_trans.C
- py_skip()
: py_animate.C
- py_speed()
: py_animate.C
- py_sphere()
: py_graphics.C
- Py_ssize_t
: py_atomsel.C
- py_stereomodes()
: py_display.C
- py_style()
: py_animate.C
- py_text()
: py_graphics.C
- py_timestep()
: py_numeric.C
- py_translate()
: py_trans.C
- py_triangle()
: py_graphics.C
- py_trinorm()
: py_graphics.C
- py_update()
: py_display.C, py_atomsel.C
- py_update_off()
: py_display.C
- py_update_on()
: py_display.C
- py_update_ui()
: py_display.C
- py_velocities()
: py_numeric.C
- py_vmdexit()
: py_vmd.C
- py_vmdupdate()
: py_vmd.C
- py_write()
: py_atomsel.C
- PyInit_vmd()
: PythonTextInterp.C
- pz_offset
: ScaleSpaceFilter.C
- pz_offset_d
: CUDAWatershed.cu
- q -
- r -
- R_SMALL
: MeasureCluster.C, fitrms.c
- R_STENCIL
: msmpot_cubic.c
- RADTODEG
: utilities.h
- RANGE
: y.tab.h, AtomParser.C
- RAW_STRING
: AtomParser.h
- rawmode
: linenoise.c
- ray_sphere_clip_interval()
: OptiXShaders.cu
- RaycastGrid()
: MeasureVolInterior.h, MeasureVolInterior.C
- rayDir
: MeasureVolInterior.C
- rayorigin
: vmdsphere.vert, vmdsphere.frag
- rdf_cpu()
: MeasureRDF.C
- rdf_gpu()
: CUDAMeasureRDF.cu, CUDAKernels.h
- rdf_thread()
: CUDAMeasureRDF.cu
- read_dssp_record()
: Stride.C
- read_matrix()
: TclMolInfo.C
- read_repeat_counts()
: pcre.c
- read_stride_record()
: Stride.C
- real_pcre
: pcreinternal.h
- real_pcre_extra
: pcreinternal.h
- rebuild_table()
: hash.c
- rebuild_table_int()
: inthash.c
- reductionthread()
: QuickSurf.C
- REFL_off
: OptiXShaders.cu
- REFL_on
: OptiXShaders.cu
- refreshLine()
: linenoise.c
- refreshMultiLine()
: linenoise.c
- refreshShowHints()
: linenoise.c
- refreshSingleLine()
: linenoise.c
- REGBLACK
: Scene.h
- REGBLUE
: Scene.h
- REGBLUE2
: Scene.h
- REGCLRS
: Scene.h
- REGCYAN
: Scene.h
- regfunc
: PluginMgr.C
- REGGREEN
: Scene.h
- REGGREY
: Scene.h
- REGICEBLUE
: Scene.h
- REGION_SIZE
: msmpot_cuda_shortrng.cu
- register_doc
: py_menu.C
- REGLIME
: Scene.h
- REGMAUVRE
: Scene.h
- REGOCHRE
: Scene.h
- REGORANGE
: Scene.h
- REGPINK
: Scene.h
- REGPURPLE
: Scene.h
- REGRED
: Scene.h
- REGSILVER
: Scene.h
- REGSIZE_X
: msmpot_cuda_shortrng.cu
- REGSIZE_Y
: msmpot_cuda_shortrng.cu
- REGSIZE_Z
: msmpot_cuda_shortrng.cu
- REGSXY
: msmpot_cuda_shortrng.cu
- REGTAN
: Scene.h
- REGWHITE
: Scene.h
- REGYELLOW
: Scene.h
- reimage_xyz()
: CUDAMeasureRDF.cu
- REJECT
: AtomLexer.C
- remarks_doc
: py_molecule.C
- remove_tcl_atomsel()
: TclCommands.C
- rename_doc
: py_material.C
- render_cb()
: MainFltkMenu.C
- render_doc
: py_render.C
- render_moddoc
: py_render.C
- rendermode_cb()
: MainFltkMenu.C
- renderNameStr
: DisplayDevice.C
- rep_max
: pcre.c
- rep_min
: pcre.c
- rep_moddoc
: py_molrep.C
- repchooser_cb()
: SaveTrajectoryFltkMenu.C
- repindex_doc
: py_molrep.C
- replace_doc
: py_graphics.C
- replacefileextension()
: WavefrontDisplayDevice.C
- repname_doc
: py_molrep.C
- REPORT
: msmpot_internal.h
- repositionfragments()
: CUDAFastPBC.cu
- repserialnum
: VMDApp.C
- reset_atomic_counter()
: CUDAMDFF.cu
- reset_density()
: TclVoltool.C
- reset_doc
: py_trans.C, py_molrep.C
- reset_istream()
: colvarbias_meta.C
- reset_origin()
: TclVoltool.C
- resetview_cb()
: MainFltkMenu.C
- RESNOTHING
: Atom.h
- RESNUCLEIC
: Atom.h
- RESPROTEIN
: Atom.h
- RESTRICT
: CUDASpatialSearch.cu, CUDAQuickSurf.cu, CUDAOrbital.cu, CUDAMeasureQCP.cu, CUDAMDFF.cu, CUDAMarchingCubes.cu, CUDABench.cu, Benchmark.C
- restriction()
: msmpot_cubic.c
- result
: colvarscript_commands_colvar.h
- RESWATERS
: Atom.h
- return_segment_usage()
: TclSegmentation.C
- reverse_cb()
: MainFltkMenu.C
- reverse_doc
: py_animate.C
- REVERSE_RAY_LENGTH
: OptiXShaders.cu
- REVERSE_RAY_STEP
: OptiXShaders.cu
- rgyr_doc
: py_atomsel.C
- RIBBON_ERR_BADNUCLEIC
: DrawMolItemRibbons.C
- RIBBON_ERR_BADPURINE
: DrawMolItemRibbons.C
- RIBBON_ERR_BADPYRIMIDINE
: DrawMolItemRibbons.C
- RIBBON_ERR_MISSING_O1P_O2P
: DrawMolItemRibbons.C
- RIBBON_ERR_MISSING_PHOSPHATE
: DrawMolItemRibbons.C
- RIBBON_ERR_NOTENOUGH
: DrawMolItemRibbons.C
- RIBBON_ERR_PROTEIN_MESS
: DrawMolItemRibbons.C
- ribbon_spline()
: DrawRingsUtils.h, DrawRingsUtils.C
- ring_array_color_bounds()
: OptiXShaders.cu
- ring_array_color_intersect()
: OptiXShaders.cu
- ring_axes()
: DrawRingsUtils.C
- ring_color_buffer
: OptiXShaders.cu
- RINGSIZE
: y.tab.h, AtomParser.C
- rmsd_doc
: py_atomsel.C
- rmsd_q_doc
: py_atomsel.C
- rmsdmat_q_doc
: py_atomsel.C
- rmsdperres_doc
: py_atomsel.C
- rmsf_doc
: py_atomsel.C
- rmsfperres_doc
: py_atomsel.C
- rock_doc
: py_animate.C
- ROTATE
: nr_jacobi.C, Measure.C
- rotate()
: TclVoltool.C
- rotate_doc
: py_trans.C
- round_to_integer()
: colvarproxy_system.C
- RT_SHADOWS_OFF
: OptiXShaders.h
- RT_SHADOWS_ON
: OptiXShaders.h
- RT_SHADOWS_ON_REVERSE
: OptiXShaders.h
- rtDeclareVariable()
: OptiXShaders.cu
- RTERR
: OptiXRenderer.C
- RTERR2
: OptiXRenderer.C
- RtShadowMode
: OptiXShaders.h
- run_colvarscript_command()
: colvarscript.h, colvarscript.C
- RUNTYPE_DYNAMICS
: QMData.h
- RUNTYPE_ENERGY
: QMData.h
- RUNTYPE_GRADIENT
: QMData.h
- RUNTYPE_HESSIAN
: QMData.h
- RUNTYPE_MEX
: QMData.h
- RUNTYPE_OPTIMIZE
: QMData.h
- RUNTYPE_PROPERTIES
: QMData.h
- RUNTYPE_SADPOINT
: QMData.h
- RUNTYPE_SURFACE
: QMData.h
- RUNTYPE_UNKNOWN
: QMData.h
- s -
- S_SHELL
: QMData.h, OrbitalJIT.C, Orbital.C, OpenCLOrbital.C, CUDAOrbital.cu
- SAFESTRNCPY
: MolFilePlugin.C
- SAME
: y.tab.h, AtomParser.C
- same_double()
: ParseTree.C
- same_int()
: ParseTree.C
- same_string()
: ParseTree.C
- sampleColors()
: CUDAMarchingCubes.cu
- sampleVolume()
: CUDAMarchingCubes.cu
- sasa()
: py_atomsel.C
- sasa_doc
: py_atomsel.C
- sasa_perresidue()
: py_atomsel.C
- sasa_perresidue_doc
: py_atomsel.C
- save_cb()
: SaveTrajectoryFltkMenu.C
- savestate_cb()
: MainFltkMenu.C
- SBALL_COMMAND_APP_SENSITIVITY
: OpenGLDisplayDevice.h, glwin.c
- SBALL_COMMAND_APP_WINDOW
: OpenGLDisplayDevice.h, glwin.c
- SBALL_COMMAND_NONE
: OpenGLDisplayDevice.h, glwin.c
- scale_color()
: Scene.C
- scale_doc
: py_trans.C
- SCALE_FACTOR
: RayShadeDisplayDevice.C
- scale_max_doc
: py_color.C
- scale_method_doc
: py_color.C
- scale_methods_doc
: py_color.C
- scale_midpoint_doc
: py_color.C
- scale_min_doc
: py_color.C
- scale_posterize_doc
: py_color.C
- scale_reverse_doc
: py_color.C
- SCALE_TYPE_DIVERGENT
: Scene.C
- SCALE_TYPE_TABULATED
: Scene.C
- SCALE_TYPE_TABULATED_SRGB
: Scene.C
- SCALEADD
: DrawMolItem.C
- SCALESUM
: DrawMolItem.C
- scaleTypes
: Scene.C
- Scanning_Behaviors
: P_SensorConfig.C
- SCEXP0
: QuickSurf_AVX2.C, QuickSurf.C, Orbital.C
- SCEXP1
: QuickSurf_AVX2.C, QuickSurf.C, Orbital.C
- SCEXP2
: QuickSurf_AVX2.C, QuickSurf.C, Orbital.C
- SCEXP3
: QuickSurf_AVX2.C, QuickSurf.C, Orbital.C
- SCEXP4
: QuickSurf_AVX2.C, QuickSurf.C, Orbital.C
- SCFTYPE_FF
: QMData.h
- SCFTYPE_GVB
: QMData.h
- SCFTYPE_MCSCF
: QMData.h
- SCFTYPE_NONE
: QMData.h
- SCFTYPE_RHF
: QMData.h
- SCFTYPE_ROHF
: QMData.h
- SCFTYPE_UHF
: QMData.h
- SCFTYPE_UNKNOWN
: QMData.h
- screend_cb()
: DisplayFltkMenu.C
- screenh_cb()
: DisplayFltkMenu.C
- segment_volume()
: TclSegmentation.C
- select_doc
: py_molrep.C
- select_tool_cb()
: ToolFltkMenu.C
- select_tool_type_cb()
: ToolFltkMenu.C
- selection_methods
: py_selection.C
- selframe()
: ParseTree.C
- SEND_ADDCLIENT
: MobileInterface.C
- send_dgram()
: MobileInterface.C
- SEND_HEARTBEAT
: MobileInterface.C
- SEND_MESSAGE
: MobileInterface.C
- SEND_REMOVECLIENT
: MobileInterface.C
- SEND_SETACTIVECLIENT
: MobileInterface.C
- SEND_SETMODE
: MobileInterface.C
- sendforces_doc
: py_imd.C
- sendmsg()
: Inform.h, Inform.C
- SEQ
: y.tab.h, AtomParser.C
- sequentialize_groups_cuda()
: CUDASegmentation.h, CUDASegmentation.cu
- set_autoupdate_doc
: py_molrep.C
- set_bool()
: colvarparse.C
- set_cave_pointers()
: CaveRoutines.h, CaveRoutines.C
- set_chooser_from_string()
: VMDFltkMenu.h, VMDFltkMenu.C
- set_colorid_doc
: py_color.C
- set_colormap_doc
: py_color.C
- set_colors_doc
: py_color.C
- set_cupdate_doc
: py_molrep.C
- set_device()
: msmpot_cuda.cu
- set_doc
: py_display.C, py_atomsel.C
- set_force_data
: AtomSel.C
- set_frame_doc
: py_molecule.C
- set_freevr_pointers()
: FreeVRRoutines.h, FreeVRRoutines.C
- set_gaussian_1D_kernel_cuda()
: CUDAGaussianBlur.h, CUDAGaussianBlur.cu
- set_gpu_state()
: CUDAWatershed.cu
- set_periodic_doc
: py_molecule.C
- set_position_data
: AtomSel.C
- set_result_colvarvalue()
: colvarscript_commands_colvar.h
- set_result_int()
: colvarscript_commands_bias.h
- set_scale_doc
: py_molrep.C, py_color.C
- set_smooth_doc
: py_molrep.C
- set_top_doc
: py_molecule.C
- set_vel_data
: AtomSel.C
- set_visible_doc
: py_molrep.C, py_molecule.C
- set_vmdapp()
: py_commands.h, py_commands.C
- set_vrjuggler_pointers()
: VRJugglerRoutines.h, VRJugglerRoutines.C
- SET_X
: msmpot_internal.h
- SET_Y
: msmpot_internal.h
- SET_Z
: msmpot_internal.h
- setbonds()
: py_atomsel.C
- setfix_doc
: py_trans.C
- setframe()
: py_atomsel.C
- setfullscreen()
: OpenGLDisplayDevice.C
- setloc_doc
: py_axes.C
- setshow_doc
: py_trans.C
- settime_doc
: py_molecule.C
- settings_doc
: py_material.C
- setup_bins()
: msmpot_setup.c
- setup_cuda_filter()
: CUDAGaussianBlur.h
- setup_domain()
: msmpot_setup.c
- setup_hierarchy()
: msmpot_setup.c
- setup_mapinterp()
: msmpot_setup.c
- setup_mapinterpcoef_1d()
: msmpot_setup.c
- setup_nonperiodic_hlevelparams_1d()
: msmpot_setup.c
- setup_origin()
: msmpot_setup.c
- setup_periodic_hlevelparams_1d()
: msmpot_setup.c
- SetupOpenGL()
: Win32OpenGLDisplayDevice.C
- seveneighthtone
: OpenGLStipples.h
- SGE
: y.tab.h, AtomParser.C
- SGT
: y.tab.h, AtomParser.C
- shade_ambient_occlusion()
: OptiXShaders.cu
- shade_light()
: OptiXShaders.cu
- shader_template()
: OptiXShaders.cu
- shadowmode_cb()
: DisplayFltkMenu.C
- SHADOWS_off
: OptiXShaders.cu
- SHADOWS_on
: OptiXShaders.cu
- SHAREDSIZE
: OpenCLOrbital.C, CUDAOrbital.cu
- SHINY_A
: MaterialList.C
- SHINY_k
: MaterialList.C
- SHMEMCOPY
: msmpot_cuda_latcut.cu
- show_doc
: py_trans.C, py_menu.C
- showTitle
: vmd.C
- sighandler_t
: vmd.C
- signed_angle()
: VolMapCreateILS.C
- simenc_decode_frame()
: VideoStream.C
- simenc_destroy()
: VideoStream.C
- simenc_encode_frame()
: VideoStream.C
- simenc_initialize()
: VideoStream.C
- simenc_reconfig()
: VideoStream.C
- simple_scalar_dist_functions
: colvarcomp_rotations.C, colvarcomp_protein.C, colvarcomp_distances.C, colvarcomp_coordnums.C, colvarcomp_angles.C, colvarcomp_alchlambda.C, colvarcomp.h
- SIMPLE_TCL_OPT
: tcl_commands.C
- sinfo
: msmpot_cuda_latcut.cu
- SINGLE
: y.tab.h, AtomParser.C
- size
: MDFF.C
- skip_doc
: py_animate.C
- SKIP_IDENTICAL
: MeasureSymmetry.h
- SLE
: y.tab.h, AtomParser.C
- slope3_lower()
: Scene.C
- slope3_middle()
: Scene.C
- slope3_upper()
: Scene.C
- SLT
: y.tab.h, AtomParser.C
- SNE
: y.tab.h, AtomParser.C
- SOLIDLINE
: DispCmds.h
- SOLIDSPHERE
: DispCmds.h
- solve_position()
: VMDTitle.C
- sortAtomsColorsGenCellLists()
: CUDASpatialSearch.cu
- sortAtomsGenCellLists()
: CUDASpatialSearch.cu
- sorted_color
: CUDAQuickSurf.cu
- sorted_xyzr
: CUDAQuickSurf.cu
- SP_P_SHELL
: QMData.h
- SP_S_SHELL
: QMData.h
- spaceball_attach()
: glwin.c
- spaceball_clear_event()
: OpenGLDisplayDevice.C, glwin.c
- spaceball_close()
: OpenGLDisplayDevice.C, glwin.c
- spaceball_decode_event()
: OpenGLDisplayDevice.C, glwin.c
- spaceball_enable()
: OpenGLDisplayDevice.C
- spaceball_init_event()
: OpenGLDisplayDevice.C, glwin.c
- spaceball_usage()
: cmd_spaceball.C
- SPD_D_SHELL
: QMData.h
- SPD_P_SHELL
: QMData.h
- SPD_S_SHELL
: QMData.h
- speed_cb()
: MainFltkMenu.C
- speed_doc
: py_animate.C
- SPEED_FACTOR
: Animation.h
- sphere_array_bounds()
: OptiXShaders.cu
- sphere_array_color_bounds()
: OptiXShaders.cu
- sphere_array_color_intersect()
: OptiXShaders.cu
- sphere_array_intersect()
: OptiXShaders.cu
- sphere_buffer
: OptiXShaders.cu
- sphere_color_buffer
: OptiXShaders.cu
- sphere_doc
: py_graphics.C
- sphere_fade_and_clip()
: OptiXShaders.cu
- sphere_intersect_hearn_baker2()
: OptiXShaders.cu
- SPHEREMAXRES
: OpenGLRenderer.C, glwin.c
- spherepos
: vmdsphere.vert, vmdsphere.frag
- sphereradsq
: vmdsphere.vert, vmdsphere.frag
- spherical_cap()
: MeasureRDF.C, Measure.C
- split_tcl_atomsel_info()
: TclCommands.C
- splitline()
: P_SensorConfig.C
- SPOLY
: msmpot_internal.h
- SPRINGGEOMCOL
: GeometryList.C
- SQ_STRING
: AtomParser.h
- sqr
: P_VRPNFeedback.C, R3dDisplayDevice.C
- SS_BETA
: Residue.h
- SS_BRIDGE
: Residue.h
- SS_COIL
: Residue.h
- ss_from_dssp()
: Stride.h, Stride.C
- ss_from_stride()
: Stride.h, Stride.C
- SS_HELIX_3_10
: Residue.h
- SS_HELIX_ALPHA
: Residue.h
- SS_HELIX_PI
: Residue.h
- SS_TURN
: Residue.h
- stage_cb()
: MainFltkMenu.C
- STAGE_PANELS
: Stage.C
- STAGEEVENCOL
: Stage.C
- stageloc
: Stage.C
- STAGEODDCOL
: Stage.C
- start_cb()
: MainFltkMenu.C
- startNewMolecule
: vmd.C
- startNewMoleculeFlags
: vmd.C
- startupFileStr
: vmd.C
- state
: colvarscript_commands_bias.h
- step_cb()
: MainFltkMenu.C
- stereo_cb()
: MainFltkMenu.C
- stereomodes_doc
: py_display.C
- stereoNameStr
: DisplayDevice.C
- stereoswap_cb()
: MainFltkMenu.C
- stop_cb()
: MainFltkMenu.C
- stoprotation_cb()
: MainFltkMenu.C
- str_tokenize()
: utilities.h, utilities.C
- stream_bench()
: Benchmark.h, Benchmark.C
- STRFCTN
: y.tab.h, AtomParser.C
- string
: colvarscript_commands.h
- stringdup()
: utilities.h, utilities.C
- stringtoupper()
: utilities.h, utilities.C
- stripleadingfilepath()
: WavefrontDisplayDevice.C
- stripslashes()
: utilities.h, utilities.C
- STROKE_WIDTH
: VMDTitle.C
- strupcmp()
: utilities.h, utilities.C
- strupncmp()
: utilities.h, utilities.C
- STRWORD
: y.tab.h, AtomParser.C
- style_cb()
: MainFltkMenu.C
- style_doc
: py_molrep.C, py_animate.C
- SUB
: y.tab.h, AtomParser.C
- SUB_JS_EPSILON
: FreeVRDisplayDevice.C
- SUBCUBESZ
: msmpot_cuda_latcut.cu
- subframe_count()
: OptiXShaders.cu
- subtract()
: Voltool.h, Voltool.C
- sumabsdiff_sumreduction()
: CUDAMDFF.cu
- SWAP
: Measure.C
- swap4()
: VideoStream.C
- swap4_aligned()
: MobileInterface.C, imd.C
- swap_header()
: VideoStream.C, imd.C
- SWAP_ROWS
: OpenGLRenderer.C
- SWAP_ROWS_DOUBLE
: OpenGLRenderer.C
- SWAP_ROWS_FLOAT
: OpenGLRenderer.C
- SWAPF
: CUDAGaussianBlur.cu
- SWAPT
: GaussianBlur.C
- swift_mpi_init()
: tcl_commands.h, cmd_parallel.C
- SYMBOL_TABLE_FUNC
: py_selection.C
- szAppName
: Win32OpenGLDisplayDevice.C
- szAppTitle
: Win32OpenGLDisplayDevice.C
- t -
- TAB
: linenoise.c
- tables_length
: pcreinternal.h
- tachyon_run_string
: TachyonDisplayDevice.C
- TACHYON_RUN_STRING
: TachyonDisplayDevice.C
- TARGET_GRAB
: P_Tool.h
- TARGET_TUG
: P_Tool.h
- targetMap
: MeasureVolInterior.C
- targetPmap
: MeasureVolInterior.C
- targetVol
: MeasureVolInterior.C, MDFF.C
- tbcatomic
: CUDAMDFF.cu
- tcl_append_matrix()
: TclVec.C, TclCommands.h
- tcl_colorinfo()
: TclCommands.h, ColorInfo.C
- tcl_colorinfo_categories()
: ColorInfo.C
- tcl_colorinfo_category()
: ColorInfo.C
- tcl_colorinfo_colors()
: ColorInfo.C
- tcl_colorinfo_index()
: ColorInfo.C
- tcl_colorinfo_max()
: ColorInfo.C
- tcl_colorinfo_num()
: ColorInfo.C
- tcl_colorinfo_rgb()
: ColorInfo.C
- tcl_colorinfo_scale()
: ColorInfo.C
- tcl_colvars()
: colvarproxy_vmd.h, colvarproxy_vmd.C
- tcl_colvars_vmd_init()
: colvarscript.C, colvarproxy_vmd.C
- tcl_commands_get_sel()
: TclCommands.h, TclCommands.C
- tcl_get_array()
: TclVec.C, TclCommands.h
- tcl_get_intarray()
: TclVec.C, TclCommands.h
- tcl_get_matrix()
: TclVec.C, TclCommands.h
- tcl_get_orders()
: TclMeasure.C
- tcl_get_vecarray()
: TclVec.C, TclCommands.h
- tcl_get_vector()
: TclVec.C, TclCommands.h
- tcl_get_weights()
: TclMeasure.C, TclCommands.h
- tcl_graphics()
: TclGraphics.C
- tcl_graphics_color()
: TclGraphics.C
- tcl_graphics_cone()
: TclGraphics.C
- tcl_graphics_cylinder()
: TclGraphics.C
- tcl_graphics_delete()
: TclGraphics.C
- tcl_graphics_exists()
: TclGraphics.C
- tcl_graphics_info()
: TclGraphics.C
- tcl_graphics_line()
: TclGraphics.C
- tcl_graphics_material()
: TclGraphics.C
- tcl_graphics_materials()
: TclGraphics.C
- tcl_graphics_pickpoint()
: TclGraphics.C
- tcl_graphics_point()
: TclGraphics.C
- tcl_graphics_replace()
: TclGraphics.C
- tcl_graphics_sphere()
: TclGraphics.C
- tcl_graphics_spheretube()
: TclGraphics.C
- tcl_graphics_text()
: TclGraphics.C
- tcl_graphics_triangle()
: TclGraphics.C
- tcl_graphics_tricolor()
: TclGraphics.C
- tcl_graphics_trinorm()
: TclGraphics.C
- TCL_HELP
: cmd_menu.C
- TCL_RET
: cmd_display.C
- tcl_run_colvarscript_command()
: colvarscript.C, colvarproxy_vmd.C
- tclhandler
: vmd.C
- tea()
: OptiXShaders.cu
- TEST_MBLOCK_EXCL
: CUDAVolMapCreateILS.cu
- TEST_SHIFT_EXCL
: CUDAVolMapCreateILS.cu
- testMap
: MeasureVolInterior.C
- TETRAHEDRON
: MeasureSymmetry.C
- texserialnum
: VMDApp.C
- text_cmd_animate()
: tcl_commands.h, cmd_animate.C
- text_cmd_axes()
: tcl_commands.h, cmd_display.C
- text_cmd_collab()
: tcl_commands.h, cmd_collab.C
- text_cmd_color()
: tcl_commands.h, cmd_color.C
- text_cmd_display()
: tcl_commands.h, cmd_display.C
- text_cmd_gopython()
: tcl_commands.h, cmd_util.C
- text_cmd_imd()
: tcl_commands.h, cmd_imd.C
- text_cmd_label()
: tcl_commands.h, cmd_label.C
- text_cmd_light()
: tcl_commands.h, cmd_display.C
- text_cmd_log()
: tcl_commands.h
- text_cmd_material()
: tcl_commands.h, cmd_material.C
- text_cmd_menu()
: tcl_commands.h, cmd_menu.C
- text_cmd_mobile()
: tcl_commands.h, cmd_mobile.C
- text_cmd_mol()
: tcl_commands.h, cmd_mol.C
- text_cmd_mouse()
: tcl_commands.h, cmd_mouse.C
- text_cmd_parallel()
: tcl_commands.h, cmd_parallel.C
- text_cmd_play()
: TclTextInterp.C
- text_cmd_plugin()
: tcl_commands.h, cmd_plugin.C
- text_cmd_point_light()
: tcl_commands.h, cmd_display.C
- text_cmd_profile()
: tcl_commands.h, cmd_profile.C
- text_cmd_quit()
: TclTextInterp.C
- text_cmd_render()
: tcl_commands.h, cmd_render.C
- text_cmd_rock()
: tcl_commands.h, cmd_trans.C
- text_cmd_rotate()
: tcl_commands.h, cmd_trans.C
- text_cmd_rotmat()
: tcl_commands.h, cmd_trans.C
- text_cmd_scale()
: tcl_commands.h, cmd_trans.C
- text_cmd_sleep()
: tcl_commands.h, cmd_util.C
- text_cmd_spaceball()
: tcl_commands.h, cmd_spaceball.C
- text_cmd_stage()
: tcl_commands.h, cmd_display.C
- text_cmd_tkrender()
: tcl_commands.h, cmd_render.C
- text_cmd_tool()
: tcl_commands.h, cmd_tool.C
- text_cmd_translate()
: tcl_commands.h, cmd_trans.C
- text_cmd_user()
: tcl_commands.h, cmd_user.C
- text_cmd_videostream()
: tcl_commands.h, cmd_videostream.C
- text_cmd_vmdbench()
: tcl_commands.h, cmd_vmdbench.C
- text_cmd_wait()
: TclTextInterp.C
- text_doc
: py_graphics.C
- textformat_cb()
: GeometryFltkMenu.C
- textoffset_cb()
: GeometryFltkMenu.C
- textsizeinputcb()
: GeometryFltkMenu.C
- textsizeslidercb()
: GeometryFltkMenu.C
- textthicknessinputcb()
: GeometryFltkMenu.C
- textthicknessslidercb()
: GeometryFltkMenu.C
- THBLEN
: CUDAVolMapCreateILS.cu
- the_app
: py_vmd.C
- this_bias
: colvarscript_commands_bias.h
- this_colvar
: colvarscript_commands_colvar.h
- thread_cc_sum()
: CUDAMDFF.cu
- THREADSPERWARP
: CUDAMeasureRDF.cu
- threequartertone
: OpenGLStipples.h
- threshold
: MDFF.C
- THROUGH
: y.tab.h, AtomParser.C
- ThrustScanWrapperArea()
: CUDAMarchingCubes.cu
- ThrustScanWrapperUint2()
: CUDAMarchingCubes.cu
- tighten_bin_neighborhood()
: VolMapCreateILS.C
- TILESIZEX
: OrbitalJIT.C, OpenCLVolCPotential.C, OpenCLOrbital.C, CUDAVolCPotential.cu, CUDAOrbital.cu
- TILESIZEY
: OrbitalJIT.C, OpenCLVolCPotential.C, OpenCLOrbital.C, CUDAVolCPotential.cu, CUDAOrbital.cu
- time_doc
: py_molecule.C
- time_of_day()
: utilities.h, utilities.C
- TIME_PER_MONOATOM_WORKUNIT
: CUDAVolMapCreateILS.cu
- TIME_PER_MULTIATOM_WORKUNIT
: CUDAVolMapCreateILS.cu
- TIMER
: Segmentation.h
- timestep_doc
: py_numeric.C
- TIMING
: VolMapCreateILS.C
- TITLE_OFF
: vmd.C
- TITLE_ON
: vmd.C
- titleTypeNames
: vmd.C
- TitleTypes
: vmd.C
- toolrep_cb()
: ToolFltkMenu.C
- toolrepCmdList
: ToolFltkMenu.C
- topo_add_angle()
: py_topo.C
- topo_add_bond()
: py_topo.C
- topo_add_dihed()
: py_topo.C
- topo_add_improp()
: py_topo.C
- topo_angletypes()
: py_topo.C
- topo_bondtypes()
: py_topo.C
- topo_del_all_angles()
: py_topo.C
- topo_del_all_bonds()
: py_topo.C
- topo_del_all_dihed()
: py_topo.C
- topo_del_all_impropers()
: py_topo.C
- topo_del_angle()
: py_topo.C
- topo_del_bond()
: py_topo.C
- topo_del_dihed()
: py_topo.C
- topo_del_improper()
: py_topo.C
- topo_dihetypes()
: py_topo.C
- topo_get_angle()
: py_topo.C
- topo_get_bond()
: py_topo.C
- topo_get_dihed()
: py_topo.C
- topo_get_impro()
: py_topo.C
- topo_imptypes()
: py_topo.C
- topo_moddoc
: py_topo.C
- TOTALBLOCKSZ
: CUDAMDFF.cu
- trans_from_rotate()
: Matrix4.h, Matrix4.C
- trans_moddoc
: py_trans.C
- TRANS_off
: OptiXShaders.cu
- TRANS_on
: OptiXShaders.cu
- trans_overlap()
: MeasureSymmetry.C
- transfer_doc
: py_imd.C
- translate_doc
: py_trans.C
- transvec()
: Measure.C
- transvecinv()
: Measure.C
- tri_degenerate()
: utilities.h, utilities.C
- triangle_doc
: py_graphics.C
- triangulate()
: VolMapCreateILS.C
- tricolor_bounds()
: OptiXShaders.cu
- tricolor_buffer
: OptiXShaders.cu
- tricolor_intersect()
: OptiXShaders.cu
- trimesh_c4u_n3b_v3f_bounds()
: OptiXShaders.cu
- trimesh_c4u_n3b_v3f_buffer
: OptiXShaders.cu
- trimesh_c4u_n3b_v3f_intersect()
: OptiXShaders.cu
- trimesh_n3b_v3f_bounds()
: OptiXShaders.cu
- trimesh_n3b_v3f_buffer
: OptiXShaders.cu
- trimesh_n3b_v3f_intersect()
: OptiXShaders.cu
- trimesh_n3f_v3f_bounds()
: OptiXShaders.cu
- trimesh_n3f_v3f_buffer
: OptiXShaders.cu
- trimesh_n3f_v3f_intersect()
: OptiXShaders.cu
- trimesh_v3f_bounds()
: OptiXShaders.cu
- trimesh_v3f_buffer
: OptiXShaders.cu
- trimesh_v3f_intersect()
: OptiXShaders.cu
- trinorm_doc
: py_graphics.C
- TRUE
: utilities.h, pcreinternal.h
- TSE_ANGLE
: Timestep.h
- TSE_BOND
: Timestep.h
- TSE_COUL
: Timestep.h
- TSE_DIHE
: Timestep.h
- TSE_EFIELD
: Timestep.h
- TSE_HBOND
: Timestep.h
- TSE_IMPR
: Timestep.h
- TSE_KE
: Timestep.h
- TSE_PE
: Timestep.h
- TSE_PRESSURE
: Timestep.h
- TSE_RESTRAINT
: Timestep.h
- TSE_TEMP
: Timestep.h
- TSE_TOTAL
: Timestep.h
- TSE_UREY_BRADLEY
: Timestep.h
- TSE_VDW
: Timestep.h
- TSE_VOLUME
: Timestep.h
- TSENERGIES
: Timestep.h
- TUGGEOMCOL
: GeometryList.C
- turbo_srgb_data
: ColorScaleTables.h
- TURN_FACTOR
: FreeVRDisplayDevice.C
- u -
- ull2float
: CUDAMeasureRDF.cu
- UMINUS
: y.tab.h, AtomParser.C
- unput
: AtomLexer.C
- UNROLL_1
: msmpot_cuda_latcut.cu
- UNROLL_2
: msmpot_cuda_latcut.cu
- UNROLL_Y
: msmpot_cuda_shortrng.cu
- UNROLLX
: OrbitalJIT.C, OpenCLVolCPotential.C, OpenCLOrbital.C, CUDAVolCPotential.cu, CUDAOrbital.cu
- UNROLLY
: OrbitalJIT.C, OpenCLVolCPotential.C, OpenCLOrbital.C, CUDAVolCPotential.cu, CUDAOrbital.cu
- unsupported_term
: linenoise.c
- UNUSED
: AtomRep.C
- unwrapatomic()
: CUDAFastPBC.cu
- update_cuda()
: CUDAWatershed.h, CUDAWatershed.cu
- update_cuda< int, float >()
: CUDAWatershed.cu
- update_cuda< int, unsigned char >()
: CUDAWatershed.cu
- update_cuda< int, unsigned short >()
: CUDAWatershed.cu
- update_cuda< long, float >()
: CUDAWatershed.cu
- update_cuda< long, unsigned char >()
: CUDAWatershed.cu
- update_cuda< long, unsigned short >()
: CUDAWatershed.cu
- update_cuda< short, float >()
: CUDAWatershed.cu
- update_cuda< short, unsigned char >()
: CUDAWatershed.cu
- update_cuda< short, unsigned short >()
: CUDAWatershed.cu
- update_doc
: py_display.C, py_atomsel.C
- update_group_idx()
: CUDASegmentation.cu
- update_group_map()
: CUDASegmentation.cu
- update_groups_from_map()
: CUDASegmentation.cu
- update_kernel()
: CUDAWatershed.cu
- update_off_doc
: py_display.C
- update_on_doc
: py_display.C
- update_ui_doc
: py_display.C
- UPDATE_VOXEL
: Watershed.C
- UPDATE_VOXEL_CUDA
: CUDAWatershed.cu
- uschar
: pcreinternal.h
- USE_BIN_HASHING
: msmpot_compute.c
- USE_ENERGY_EXCL
: CUDAVolMapCreateILS.cu
- USE_FACTORED_GRID_TRANSFERS
: msmpot_cubic.c
- USEOPENGL
: glwin.c
- v -
- V
: vmdspheresprite.vert, vmdspheresprite.frag, vmdsphere.vert, vmdsphere.frag, vmd.vert, vmd.frag
- V4BLOCKSIZE
: OpenCLVolCPotential.C, OpenCLOrbital.C
- V4BLOCKSIZEX
: OpenCLVolCPotential.C, OpenCLOrbital.C
- V4BLOCKSIZEY
: OpenCLVolCPotential.C, OpenCLOrbital.C
- V4GPU_X_ALIGNMASK
: OpenCLVolCPotential.C, OpenCLOrbital.C
- V4GPU_Y_ALIGNMASK
: OpenCLVolCPotential.C, OpenCLOrbital.C
- V4TILESIZEX
: OpenCLVolCPotential.C, OpenCLOrbital.C
- V4TILESIZEY
: OpenCLVolCPotential.C, OpenCLOrbital.C
- V4UNROLLX
: OpenCLVolCPotential.C, OpenCLOrbital.C
- V4UNROLLY
: OpenCLVolCPotential.C, OpenCLOrbital.C
- valid_molid()
: py_commands.h, py_commands.C
- valid_rep()
: py_molrep.C
- vec_add()
: utilities.h
- vec_copy()
: utilities.h
- vec_incr()
: utilities.h, DrawRingsUtils.C
- Vec_Init()
: TclVec.C, TclCommands.h
- vec_lerp()
: utilities.h
- vec_negate()
: utilities.h
- vec_normalize()
: utilities.h, utilities.C
- vec_scale()
: utilities.h
- vec_scaled_add()
: utilities.h
- vec_sub()
: utilities.h
- vec_triad()
: utilities.h
- vec_zero()
: utilities.h
- VECPADMASK
: Orbital.C
- VECPADSZ
: Orbital.C
- VECTORIZEME
: Benchmark.C
- vectrans()
: utilities.h
- velocities_doc
: py_numeric.C
- vertexInterp()
: CUDAMarchingCubes.cu
- VERTICALPLANE
: MeasureSymmetry.C
- VIDEOSTREAM_ERROR
: VideoStream.h
- VIDEOSTREAM_SIMENCODER
: VideoStream.C
- VIDEOSTREAM_SUCCESS
: VideoStream.h
- videostream_usage()
: cmd_videostream.C
- viridis_data
: ColorScaleTables.h
- VISCLRS
: Scene.h
- visible_doc
: py_molrep.C
- VMD_1_PI
: utilities.h
- VMD_1_PIF
: utilities.h
- vmd_alloc
: VMDApp.h, vmd.C
- vmd_anari_status_callback()
: ANARIRenderer.C
- VMD_ANGS_TO_BOHR
: utilities.h
- vmd_bond_search()
: BondSearch.h, BondSearch.C
- vmd_bondsearch_thr()
: BondSearch.h, BondSearch.C
- vmd_camera_cubemap()
: OptiXShaders.cu
- vmd_camera_cubemap_dof()
: OptiXShaders.cu
- vmd_camera_cubemap_general()
: OptiXShaders.cu
- vmd_camera_cubemap_stereo()
: OptiXShaders.cu
- vmd_camera_cubemap_stereo_dof()
: OptiXShaders.cu
- vmd_camera_dome_general()
: OptiXShaders.cu
- vmd_camera_dome_master()
: OptiXShaders.cu
- vmd_camera_dome_master_dof()
: OptiXShaders.cu
- vmd_camera_dome_master_stereo()
: OptiXShaders.cu
- vmd_camera_dome_master_stereo_dof()
: OptiXShaders.cu
- vmd_camera_equirectangular()
: OptiXShaders.cu
- vmd_camera_equirectangular_dof()
: OptiXShaders.cu
- vmd_camera_equirectangular_general()
: OptiXShaders.cu
- vmd_camera_equirectangular_stereo()
: OptiXShaders.cu
- vmd_camera_equirectangular_stereo_dof()
: OptiXShaders.cu
- vmd_camera_oculus_rift()
: OptiXShaders.cu
- vmd_camera_oculus_rift_dof()
: OptiXShaders.cu
- vmd_camera_oculus_rift_general()
: OptiXShaders.cu
- vmd_camera_oculus_rift_stereo()
: OptiXShaders.cu
- vmd_camera_oculus_rift_stereo_dof()
: OptiXShaders.cu
- vmd_camera_orthographic()
: OptiXShaders.cu
- vmd_camera_orthographic_dof()
: OptiXShaders.cu
- vmd_camera_orthographic_general()
: OptiXShaders.cu
- vmd_camera_orthographic_stereo()
: OptiXShaders.cu
- vmd_camera_orthographic_stereo_dof()
: OptiXShaders.cu
- vmd_camera_perspective()
: OptiXShaders.cu
- vmd_camera_perspective_dof()
: OptiXShaders.cu
- vmd_camera_perspective_general()
: OptiXShaders.cu
- vmd_camera_perspective_stereo()
: OptiXShaders.cu
- vmd_camera_perspective_stereo_dof()
: OptiXShaders.cu
- vmd_cave_initialized_flag
: CaveRoutines.C
- vmd_cave_is_initialized()
: CaveRoutines.h, CaveRoutines.C
- VMD_CHECK_EVENTS
: VMDApp.h
- vmd_check_stdin()
: utilities.h, utilities.C
- vmd_cl_compile_kernel()
: OpenCLUtils.h, OpenCLUtils.C
- vmd_cl_compile_kernel_file()
: OpenCLUtils.C
- vmd_cl_context_num_devices()
: OpenCLUtils.h, OpenCLUtils.C
- vmd_cl_create_command_queue()
: OpenCLUtils.h, OpenCLUtils.C
- vmd_cl_get_platform_index()
: OpenCLUtils.h, OpenCLUtils.C
- vmd_cl_print_platform_info()
: OpenCLUtils.h, OpenCLUtils.C
- vmd_closedir()
: VMDDir.h, VMDDir.C
- vmd_cross_3d()
: OpenGLRenderer.C
- vmd_cuda_affinitize_threads()
: CUDAUtil.cu, CUDAKernels.h
- vmd_cuda_build_accel()
: CUDAMDFF.cu
- vmd_cuda_build_density_atom_grid()
: CUDASpatialSearch.h, CUDASpatialSearch.cu
- vmd_cuda_bus_bw()
: CUDAKernels.h, CUDABench.cu
- vmd_cuda_calc_density()
: CUDAMDFF.h, CUDAMDFF.cu
- vmd_cuda_cc_calc()
: CUDAMDFF.cu
- vmd_cuda_compare_sel_refmap()
: CUDAMDFF.h, CUDAMDFF.cu
- vmd_cuda_destroy_accel()
: CUDAMDFF.cu
- vmd_cuda_device_props()
: CUDAUtil.cu, CUDAKernels.h
- vmd_cuda_devpool_clear_device_mem()
: CUDAKernels.h, CUDAClearDevice.cu
- vmd_cuda_devpool_enable_P2P()
: CUDAUtil.cu, CUDAKernels.h
- vmd_cuda_devpool_latency()
: CUDAKernels.h, CUDABench.cu
- vmd_cuda_devpool_setdevice()
: CUDAUtil.cu, CUDAKernels.h
- vmd_cuda_devpool_setdeviceonly()
: CUDAUtil.cu, CUDAKernels.h
- vmd_cuda_drv_runtime_compatible()
: CUDAUtil.cu
- vmd_cuda_evaluate_occupancy_map()
: CUDAVolMapCreateILS.cu, CUDAKernels.h
- vmd_cuda_evaluate_orbital_grid()
: CUDAOrbital.h, CUDAOrbital.cu
- vmd_cuda_gaussdensity_calc()
: CUDAMDFF.cu
- vmd_cuda_globmem_bw()
: CUDAKernels.h, CUDABench.cu
- vmd_cuda_kernel_launch_dims()
: CUDAMDFF.cu
- vmd_cuda_madd_gflops()
: CUDAKernels.h, CUDABench.cu
- vmd_cuda_measure_latencies()
: CUDAKernels.h, CUDABench.cu
- vmd_cuda_num_devices()
: CUDAUtil.cu, CUDAKernels.h
- vmd_cuda_peer_matrix()
: CUDAUtil.cu, CUDAKernels.h
- vmd_cuda_vol_cpotential()
: CUDAVolCPotential.cu, CUDAKernels.h
- vmd_dealloc
: VMDApp.h, vmd.C
- VMD_DEFAULT_FONT_SCALE
: Hershey.C
- vmd_delete_file()
: utilities.h, utilities.C
- vmd_double_compare()
: SelectionBuilder.C
- vmd_DrawConic()
: OpenGLRenderer.C
- vmd_DrawSphere()
: OpenGLRenderer.C
- vmd_file_is_executable()
: VMDDir.h, VMDDir.C
- VMD_FILENAME_MAX
: win32vmdstart.c, VMDDir.C, Surf.C
- vmd_finalize_tcl()
: vmd.C
- VMD_FLCHART_WORKAROUND
: GeometryFltkMenu.h
- vmd_float3_aos_to_soa()
: CUDAMeasureQCP.cu
- vmd_float3_aos_to_soa_selected()
: CUDAMeasureQCP.cu
- VMD_FS_ERROR
: vmdfsinfo.h
- VMD_FS_IS_LOCAL
: vmdfsinfo.h
- VMD_FS_IS_REMOTE
: vmdfsinfo.h
- VMD_FS_IS_UNKNOWN
: vmdfsinfo.h
- vmd_fstype_locality()
: vmdfsinfo.h, vmdfsinfo.c
- vmd_ftpclient()
: Win32ftp.h, Win32ftp.C
- vmd_gaussdensity_avx2()
: QuickSurf_AVX2.C, QuickSurf.C
- vmd_gaussdensity_neon()
: QuickSurf.C
- vmd_gaussdensity_opt()
: QuickSurf.C
- vmd_gaussdensity_threaded()
: QuickSurf.C
- vmd_get_avail_physmem_mb()
: utilities.h, utilities.C
- vmd_get_avail_physmem_percent()
: utilities.h, utilities.C
- vmd_get_total_physmem_mb()
: utilities.h, utilities.C
- vmd_get_visual()
: OpenGLDisplayDevice.C
- vmd_get_vmddir()
: win32vmdstart.c
- vmd_getuid()
: utilities.h, utilities.C
- vmd_gpu_selection_indexlist()
: CUDAMeasureQCP.cu
- vmd_gridsearch1()
: SpatialSearch.h, SpatialSearch.C
- vmd_gridsearch2()
: SpatialSearch.h, SpatialSearch.C
- vmd_gridsearch3()
: SpatialSearch.h, SpatialSearch.C
- vmd_gridsearch_bonds()
: BondSearch.h, BondSearch.C
- VMD_IGNORE_EVENTS
: VMDApp.h
- Vmd_Init()
: TclCommands.h, tcl_commands.C
- vmd_initialize_tcl()
: vmd.C
- vmd_int_compare()
: SelectionBuilder.C
- vmd_invert_mat_4x4d()
: OpenGLRenderer.C
- vmd_isatty()
: TclTextInterp.C
- vmd_LookAt()
: OpenGLRenderer.C
- vmd_mat_identity_4x4d()
: OpenGLRenderer.C
- vmd_matmult_4x4d()
: OpenGLRenderer.C
- vmd_matmultvec_4x4d()
: OpenGLRenderer.C
- vmd_mattrans_d()
: OpenGLRenderer.C
- VMD_MAX_CLIP_PLANE
: VMDDisplayList.h
- vmd_measure_angle()
: TclMeasure.C
- vmd_measure_avpos()
: TclMeasure.C
- vmd_measure_bond()
: TclMeasure.C
- vmd_measure_center()
: TclMeasure.C
- vmd_measure_centerperresidue()
: TclMeasure.C
- vmd_measure_cluster()
: TclMeasure.C
- vmd_measure_clustsize()
: TclMeasure.C
- vmd_measure_contacts()
: TclMeasure.C
- vmd_measure_dihed()
: TclMeasure.C
- vmd_measure_dipole()
: TclMeasure.C
- vmd_measure_energy()
: TclMeasure.C
- vmd_measure_fit()
: TclMeasure.C
- vmd_measure_gofr()
: TclMeasure.C
- vmd_measure_hbonds()
: TclMeasure.C
- vmd_measure_inertia()
: TclMeasure.C
- vmd_measure_inverse()
: TclMeasure.C
- vmd_measure_minmax()
: TclMeasure.C
- vmd_measure_pbc2onc_transform()
: TclMeasure.C
- vmd_measure_pbc_neighbors()
: TclMeasure.C
- vmd_measure_rdf()
: TclMeasure.C
- vmd_measure_rgyr()
: TclMeasure.C
- vmd_measure_rmsd()
: TclMeasure.C
- vmd_measure_rmsd_qcp()
: TclMeasure.C
- vmd_measure_rmsdmat_qcp()
: TclMeasure.C
- vmd_measure_rmsdmat_qcp_ooc()
: TclMeasure.C
- vmd_measure_rmsdperresidue()
: TclMeasure.C
- vmd_measure_rmsf()
: TclMeasure.C
- vmd_measure_rmsfperresidue()
: TclMeasure.C
- vmd_measure_sasa()
: TclMeasure.C
- vmd_measure_sasalist()
: TclMeasure.C
- vmd_measure_sasaperresidue()
: TclMeasure.C
- vmd_measure_sumweights()
: TclMeasure.C
- vmd_measure_surface()
: TclMeasure.C
- vmd_measure_symmetry()
: TclMeasure.C
- vmd_measure_trans_overlap()
: TclMeasure.C
- vmd_measure_volinterior()
: TclMeasure.C
- vmd_moddoc
: py_vmd.C
- vmd_mpi_barrier()
: VMDMPI.h
- vmd_mpi_fini()
: VMDMPI.h
- vmd_mpi_init()
: VMDMPI.h
- vmd_mpi_nodeinfo()
: VMDMPI.h
- vmd_mpi_nodescan()
: VMDMPI.h
- VMD_MPI_TAG_ALLREDUCE_ARGLENGTH
: cmd_parallel.C
- VMD_MPI_TAG_ALLREDUCE_PAYLOAD
: cmd_parallel.C
- VMD_MPI_TAG_FOR_REQUEST
: cmd_parallel.C
- vmd_msleep()
: utilities.h, utilities.C
- vmd_opencl_compile_orbital_pgm()
: OpenCLOrbital.C
- vmd_opencl_compile_volcpotential_pgm()
: OpenCLVolCPotential.C
- vmd_opencl_create_orbital_handle()
: OpenCLOrbital.C, OpenCLKernels.h
- vmd_opencl_destroy_orbital_handle()
: OpenCLOrbital.C, OpenCLKernels.h
- vmd_opencl_evaluate_orbital_grid()
: OpenCLOrbital.C, OpenCLKernels.h
- vmd_opencl_vol_cpotential()
: OpenCLVolCPotential.C, OpenCLKernels.h
- vmd_opendir()
: VMDDir.h, VMDDir.C
- vmd_ospray2_error_callback()
: OSPRay2Renderer.C
- vmd_ospray2_status_callback()
: OSPRay2Renderer.C
- vmd_ospray_error_callback()
: OSPRayRenderer.C
- vmd_ospray_status_callback()
: OSPRayRenderer.C
- VMD_PI
: utilities.h
- VMD_PIF
: utilities.h
- vmd_Project()
: OpenGLRenderer.C
- vmd_qcp_innerprod_soa_blockperpair()
: CUDAMeasureQCP.cu
- vmd_qcp_innerprod_soa_devicewide()
: CUDAMeasureQCP.cu
- VMD_RAND_MAX
: utilities.h
- vmd_random()
: utilities.h, utilities.C
- vmd_random_gaussian()
: utilities.h, utilities.C
- vmd_readdir()
: VMDDir.h, VMDDir.C
- vmd_realloc
: VMDApp.h, vmd.C
- vmd_resize_alloc()
: VMDApp.h, vmd.C
- vmd_rt_ui_message()
: LibTachyonDisplayDevice.C
- vmd_rt_ui_progress()
: LibTachyonDisplayDevice.C
- vmd_set_cave_is_initialized()
: CaveRoutines.h, CaveRoutines.C
- vmd_set_default_occ()
: QMTimestep.h, QMTimestep.C
- vmd_set_vrjuggler_is_initialized()
: VRJugglerRoutines.h, VRJugglerRoutines.C
- vmd_sleep()
: utilities.h, utilities.C
- vmd_srandom()
: utilities.h, utilities.C
- vmd_string_compare()
: SelectionBuilder.C
- vmd_system()
: utilities.h, utilities.C
- vmd_tempfile()
: utilities.h, utilities.C
- vmd_transwin32mouse()
: Win32OpenGLDisplayDevice.C
- VMD_TWOPI
: utilities.h
- VMD_TWOPIF
: utilities.h
- vmd_UnProject()
: OpenGLRenderer.C
- VMD_USE_VMD_COLORCHOOSER
: ColorFltkMenu.h
- vmd_username()
: utilities.h, utilities.C
- vmd_vec_normalize_3d()
: OpenGLRenderer.C
- vmd_volmap_compare()
: TclVolMap.C
- vmd_volmap_ils()
: TclVolMap.C
- vmd_volmap_new_fromtype()
: TclVolMap.C
- vmd_vrjuggler_initialized_flag
: VRJugglerRoutines.C
- vmd_vrjuggler_is_initialized()
: VRJugglerRoutines.h, VRJugglerRoutines.C
- vmd_writebmp()
: ImageIO.h, ImageIO.C
- vmd_writeppm()
: ImageIO.h, ImageIO.C
- vmd_writergb()
: ImageIO.h, ImageIO.C
- vmd_writetga()
: ImageIO.h, ImageIO.C
- VMDANARIREPGROUPING
: ANARIRenderer.C
- VMDAppMethods
: py_vmd.C
- vmdbench_analyze_selection()
: Benchmark.h, Benchmark.C
- vmdbench_minmax_1fv()
: Benchmark.h, Benchmark.C
- vmdbench_minmax_3fv()
: Benchmark.h, Benchmark.C
- vmdbench_minmaxmean_1fv()
: Benchmark.h, Benchmark.C
- VMDCOLLAB_MSGSIZE
: VMDCollab.C
- VMDCON_ALL
: vmdconsole.h
- VMDCON_INFO
: vmdconsole.h
- VMDCON_NONE
: vmdconsole.h
- VMDCON_TEXT
: vmdconsole.h
- VMDCON_UNDEF
: vmdconsole.h
- VMDCON_WIDGET
: vmdconsole.h
- VMDCUDA_COMPUTEMODE_DEFAULT
: CUDAKernels.h
- VMDCUDA_COMPUTEMODE_EXCLUSIVE
: CUDAKernels.h
- VMDCUDA_COMPUTEMODE_PROHIBITED
: CUDAKernels.h
- VMDCUDA_ERR_DRVMISMATCH
: CUDAKernels.h
- VMDCUDA_ERR_EMUDEVICE
: CUDAKernels.h
- VMDCUDA_ERR_GENERAL
: CUDAKernels.h
- VMDCUDA_ERR_NODEVICES
: CUDAKernels.h
- VMDCUDA_ERR_NONE
: CUDAKernels.h
- VMDCUDA_ERR_SOMEDEVICES
: CUDAKernels.h
- vmddevpoolcudalatencythread()
: CUDABench.cu
- vmddevpoolcudatilelatencythread()
: CUDABench.cu
- vmddevpoollatencythread()
: CUDABench.cu
- vmddevpooltilelatencythread()
: CUDABench.cu
- vmddlclose()
: vmddlopen.h, vmddlopen.c
- vmddlerror()
: vmddlopen.h, vmddlopen.c
- vmddlopen()
: vmddlopen.h, vmddlopen.c
- vmddlsym()
: vmddlopen.h, vmddlopen.c
- VMDENABLEORBITALGRIDBACKDOOR
: DrawMolecule.h
- VMDEXTERNSTATIC
: inthash.h, hash.h
- VMDFLTKTOOLTIP
: VMDFltkMenu.h
- vmdfogmode
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- VMDFROPTIMIZED
: GraphLayout.C
- VMDGENMTLFILE
: WavefrontDisplayDevice.C
- VMDgetDisplayFrame()
: vmd.h, vmd.C
- VMDgetDisplayTypeName()
: vmd.h, vmd.C
- VMDGetOptions()
: vmd.C
- VMDGLXextFuncPtr
: OpenGLExtensions.h
- VMDHERSHEYFIXEDNUMERICS
: Hershey.C
- vmdinfo_tcl()
: tcl_commands.C
- VMDinitialize()
: vmd.h, vmd.C
- VMDINTELSWR
: OpenGLRenderer.C
- VMDLEANGUI
: MainFltkMenu.h
- vmdlight0
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- vmdlight0H
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- vmdlight1
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- vmdlight1H
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- vmdlight2
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- vmdlight2H
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- vmdlight3
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- vmdlight3H
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- vmdlightscale
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- vmdmaterial
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- VMDMAXVERTEXBUFSZ
: DispCmds.h
- VMDMENU_BROWSER_BG
: VMDFltkMenu.h
- VMDMENU_BROWSER_SEL
: VMDFltkMenu.h
- VMDMENU_CHECKBOX_BG
: VMDFltkMenu.h
- VMDMENU_CHECKBOX_FG
: VMDFltkMenu.h
- VMDMENU_CHOOSER_BG
: VMDFltkMenu.h
- VMDMENU_CHOOSER_SEL
: VMDFltkMenu.h
- VMDMENU_COLOR_BSLIDER
: VMDFltkMenu.h
- VMDMENU_COLOR_GSLIDER
: VMDFltkMenu.h
- VMDMENU_COLOR_RSLIDER
: VMDFltkMenu.h
- VMDMENU_GEOM_ACTIVE
: VMDFltkMenu.h
- VMDMENU_GEOM_INACTIVE
: VMDFltkMenu.h
- VMDMENU_MATSLIDER_BG
: VMDFltkMenu.h
- VMDMENU_MATSLIDER_FG
: VMDFltkMenu.h
- VMDMENU_MENU_SEL
: VMDFltkMenu.h
- VMDMENU_MOL_ACTIVE
: VMDFltkMenu.h
- VMDMENU_MOL_DISPLAYED
: VMDFltkMenu.h
- VMDMENU_MOL_FIXED
: VMDFltkMenu.h
- VMDMENU_MOL_INACTIVE
: VMDFltkMenu.h
- VMDMENU_MOL_NONDISPLAYED
: VMDFltkMenu.h
- VMDMENU_MOL_NONFIXED
: VMDFltkMenu.h
- VMDMENU_NEW_COLORSCHEME
: VMDFltkMenu.h
- VMDMENU_POSITIONER_BG
: VMDFltkMenu.h
- VMDMENU_POSITIONER_SEL
: VMDFltkMenu.h
- VMDMENU_REP_ACTIVE
: VMDFltkMenu.h
- VMDMENU_REP_INACTIVE
: VMDFltkMenu.h
- VMDMENU_SLIDER_BG
: VMDFltkMenu.h
- VMDMENU_SLIDER_FG
: VMDFltkMenu.h
- VMDMENU_SLIDER_SEL
: VMDFltkMenu.h
- VMDMENU_VALUE_BG
: VMDFltkMenu.h
- VMDMENU_VALUE_SEL
: VMDFltkMenu.h
- VMDMENU_VALUE_SEL2
: VMDFltkMenu.h
- VMDMPI_INC
: VMDMPI.h
- vmdopacity
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- VMDOPTIX_LIGHTUSEROBJS
: OptiXShaders.h, OptiXRenderer.h
- VMDORBUSETHRPOOL
: Orbital.h
- VMDOSPRAY_ENABLE_CYLINDERS
: OSPRayDisplayDevice.h
- vmdoutline
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- vmdoutlinewidth
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- VMDPBCSMOOTH
: DrawMolItem.C
- vmdpcre_compile()
: pcre.h, pcre.c
- vmdpcre_exec()
: pcre.h, pcre.c
- vmdpcre_free
: pcre.h, pcre.c
- vmdpcre_info()
: pcre.h, pcre.c
- vmdpcre_malloc
: pcre.h, pcre.c
- vmdpcre_version()
: pcre.h, pcre.c
- vmdprojectionmode
: vmdspheresprite.vert, vmdsphere.vert, vmdsphere.frag, vmd.vert
- vmdprojparms
: vmdsphere.frag
- VMDQCPUSESSE
: MeasureQCP.C
- VMDQCPUSETHRPOOL
: MeasureQCP.C
- VMDQSURFUSESSE
: QuickSurf.C
- VMDreadInit()
: vmd.h, vmd.C
- VMDreadStartup()
: vmd.h, vmd.C
- VMDshutdown()
: vmd.h, vmd.C
- vmdsock_accept()
: vmdsock.h, vmdsock.c
- vmdsock_bind()
: vmdsock.h, vmdsock.c
- vmdsock_connect()
: vmdsock.h, vmdsock.c
- vmdsock_create()
: vmdsock.h, vmdsock.c
- vmdsock_destroy()
: vmdsock.h, vmdsock.c
- vmdsock_init()
: vmdsock.h, vmdsock.c
- vmdsock_listen()
: vmdsock.h, vmdsock.c
- vmdsock_read()
: vmdsock.h, vmdsock.c
- vmdsock_selread()
: vmdsock.h, vmdsock.c
- vmdsock_selwrite()
: vmdsock.h, vmdsock.c
- vmdsock_shutdown()
: vmdsock.h, vmdsock.c
- vmdsock_write()
: vmdsock.h, vmdsock.c
- VMDSOCKINTERNAL
: vmdsock.c
- vmdsort_double()
: SelectionBuilder.C
- vmdsort_int()
: SelectionBuilder.C
- vmdsort_string()
: SelectionBuilder.C
- vmdspritesize
: vmdspheresprite.vert
- VMDTclAsyncProc()
: vmd.C
- VMDTclSigHandler()
: vmd.C
- vmdtex0
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- vmdtexturemode
: vmdspheresprite.vert, vmdspheresprite.frag, vmdsphere.vert, vmdsphere.frag, vmd.vert, vmd.frag
- VMDtitle()
: vmd.C
- vmdtransmode
: vmdspheresprite.frag, vmdsphere.frag, vmd.frag
- VMDupdateFltk()
: vmd.h, vmd.C
- VMDUSEGETPROCADDRESS
: OpenGLExtensions.h
- VMDUSEMSMPOT
: VolMapCreate.h
- VMDUSESSE
: util_simd.C
- vmdWindowProc()
: Win32OpenGLDisplayDevice.C
- VMDWIREGL
: OpenGLRenderer.C
- vnumpy_moddoc
: py_numeric.C
- void()
: linenoise.h
- voidkernel()
: CUDABench.cu
- vol_com()
: Voltool.h, Voltool.C
- vol_cpotential()
: VolCPotential.h, VolCPotential.C
- vol_cpotential_cpu()
: VolCPotential.C
- vol_move()
: Voltool.h, Voltool.C
- vol_moveto()
: Voltool.h, Voltool.C
- vol_probability()
: MeasureVolInterior.h, MeasureVolInterior.C
- VolIn_CleanGrid()
: MeasureVolInterior.C
- volin_threaded()
: MeasureVolInterior.h, MeasureVolInterior.C
- volin_threaded_prob()
: MeasureVolInterior.h, MeasureVolInterior.C
- volinparms
: MeasureVolInterior.C
- VolInterior_CleanGrid()
: MeasureVolInterior.h
- volinthread()
: MeasureVolInterior.C
- volinthread_prob()
: MeasureVolInterior.C
- volmap
: MDFF.C
- volmap_write_dx_file()
: VolMapCreate.h, VolMapCreate.C
- volmapA
: MeasureVolInterior.C
- VOLMAPTOLERANCE
: MeasureVolInterior.h
- volsz
: CUDAQuickSurf.cu
- voltexmap
: CUDAQuickSurf.cu
- VOXEL_BLOCK_SIZE
: CUDASegmentation.cu
- voxel_coord()
: Voltool.h
- VOXEL_GRADIENT_FAST
: VolumetricData.h
- VOXEL_GRADIENT_FAST_IDX
: VolumetricData.h
- vrjuggler_gl_init_fn()
: VRJugglerRoutines.h, VRJugglerRoutines.C
- vrjuggler_renderer()
: VRJugglerRoutines.h, VRJugglerRoutines.C
- vrjugglerdisplay
: VRJugglerRoutines.C
- VRJugglerMAGICINIT
: VRJugglerRoutines.C
- vrjugglerscene
: VRJugglerRoutines.C
- vrjugglerStereoNameStr
: VRJugglerDisplayDevice.C
- VRPN_CALLBACK
: P_VRPNTracker.C, P_VRPNButtons.C
- VS_HEADER_NUM_DATAUNION
: VideoStream.C
- VS_HEADERSIZE
: VideoStream.C
- vs_htonl()
: VideoStream.C
- vs_ntohl()
: VideoStream.C
- VS_PROTOCOL_VERSION
: VideoStream.C
- VSMsgHeader
: VideoStream.C
- w -
- WAND_SENSOR
: VRJugglerTracker.C, P_FreeVRTracker.C, FreeVRDisplayDevice.C
- WARP_LOG_SIZE
: CUDAMeasureRDF.cu
- warp_sum_reduction()
: CUDAMeasureQCP.cu
- watershed_hill_climb_merge_cuda()
: CUDASegmentation.h, CUDASegmentation.cu
- WATERSHED_INTERNAL
: Watershed.C, CUDAWatershed.cu, CUDAGaussianBlur.cu
- WAVE_BOYS
: QMData.h
- WAVE_CANON
: QMData.h
- WAVE_CINATUR
: QMData.h
- WAVE_GEMINAL
: QMData.h
- WAVE_MCSCFNAT
: QMData.h
- WAVE_MCSCFOPT
: QMData.h
- WAVE_MOAO
: QMData.h
- WAVE_NAO
: QMData.h
- WAVE_NATO
: QMData.h
- WAVE_NBO
: QMData.h
- WAVE_NHO
: QMData.h
- WAVE_NLMO
: QMData.h
- WAVE_PIPEK
: QMData.h
- WAVE_PNAO
: QMData.h
- WAVE_PNBO
: QMData.h
- WAVE_PNHO
: QMData.h
- WAVE_PNLMO
: QMData.h
- WAVE_RUEDEN
: QMData.h
- WAVE_UNKNOWN
: QMData.h
- WHERE
: y.tab.h, AtomParser.C
- which_display
: vmd.C
- widths
: MolBrowser.C, GraphicsFltkMenu.C
- win32vmdstart()
: win32vmdstart.h, win32vmdstart.c
- WITHIN
: y.tab.h, AtomParser.C
- WITHINBONDS
: y.tab.h, AtomParser.C
- wkf_atomic_int_add_and_fetch()
: WKFThreads.h, WKFThreads.C
- wkf_atomic_int_destroy()
: WKFThreads.h, WKFThreads.C
- wkf_atomic_int_fetch_and_add()
: WKFThreads.h, WKFThreads.C
- wkf_atomic_int_get()
: WKFThreads.h, WKFThreads.C
- wkf_atomic_int_init()
: WKFThreads.h, WKFThreads.C
- wkf_atomic_int_set()
: WKFThreads.h, WKFThreads.C
- wkf_atomic_int_t
: WKFThreads.h
- wkf_barrier_t
: WKFThreads.h
- wkf_cond_broadcast()
: WKFThreads.h, WKFThreads.C
- wkf_cond_destroy()
: WKFThreads.h, WKFThreads.C
- wkf_cond_init()
: WKFThreads.h, WKFThreads.C
- wkf_cond_signal()
: WKFThreads.h, WKFThreads.C
- wkf_cond_t
: WKFThreads.h
- wkf_cond_wait()
: WKFThreads.h, WKFThreads.C
- wkf_cpu_affinitylist()
: WKFThreads.h, WKFThreads.C
- wkf_cpu_capability_flags()
: WKFThreads.h, WKFThreads.C
- wkf_cpu_caps_t
: WKFThreads.h, VMDApp.h, utilities.h
- wkf_cpu_smt_depth()
: WKFThreads.C
- wkf_msg_timer_create()
: WKFUtils.h, WKFUtils.C
- wkf_msg_timer_destroy()
: WKFUtils.h, WKFUtils.C
- wkf_msg_timer_timeout()
: WKFUtils.h, WKFUtils.C
- wkf_mutex_destroy()
: WKFThreads.h, WKFThreads.C
- wkf_mutex_init()
: WKFThreads.h, WKFThreads.C
- wkf_mutex_lock()
: WKFThreads.h, WKFThreads.C
- wkf_mutex_spin_lock()
: WKFThreads.h, WKFThreads.C
- wkf_mutex_t
: WKFThreads.h
- wkf_mutex_trylock()
: WKFThreads.h, WKFThreads.C
- wkf_mutex_unlock()
: WKFThreads.h, WKFThreads.C
- wkf_run_barrier_t
: WKFThreads.h
- wkf_rwlock_init()
: WKFThreads.h, WKFThreads.C
- wkf_rwlock_readlock()
: WKFThreads.h, WKFThreads.C
- wkf_rwlock_t
: WKFThreads.h
- wkf_rwlock_unlock()
: WKFThreads.h, WKFThreads.C
- wkf_rwlock_writelock()
: WKFThreads.h, WKFThreads.C
- WKF_SCHED_CONTINUE
: WKFThreads.h
- WKF_SCHED_DONE
: WKFThreads.h
- wkf_shared_iterator_destroy()
: WKFThreads.h, WKFThreads.C
- wkf_shared_iterator_getfatalerror()
: WKFThreads.h, WKFThreads.C
- wkf_shared_iterator_init()
: WKFThreads.h, WKFThreads.C
- wkf_shared_iterator_next_tile()
: WKFThreads.h, WKFThreads.C
- wkf_shared_iterator_set()
: WKFThreads.h, WKFThreads.C
- wkf_shared_iterator_setfatalerror()
: WKFThreads.h, WKFThreads.C
- wkf_shared_iterator_t
: WKFThreads.h
- wkf_tasktile_t
: WKFThreads.h
- wkf_thread_barrier()
: WKFThreads.h, WKFThreads.C
- wkf_thread_barrier_destroy()
: WKFThreads.h, WKFThreads.C
- wkf_thread_barrier_init()
: WKFThreads.h, WKFThreads.C
- wkf_thread_barrier_init_proc_shared()
: WKFThreads.h, WKFThreads.C
- wkf_thread_create()
: WKFThreads.h, WKFThreads.C
- wkf_thread_join()
: WKFThreads.h, WKFThreads.C
- wkf_thread_numphysprocessors()
: WKFThreads.h, WKFThreads.C
- wkf_thread_numprocessors()
: WKFThreads.h, WKFThreads.C
- wkf_thread_run_barrier
: WKFThreads.C, WKFThreads.h
- wkf_thread_run_barrier_destroy()
: WKFThreads.h, WKFThreads.C
- wkf_thread_run_barrier_init()
: WKFThreads.h, WKFThreads.C
- wkf_thread_run_barrier_poll()
: WKFThreads.h, WKFThreads.C
- wkf_thread_set_self_cpuaffinity()
: WKFThreads.h, WKFThreads.C
- wkf_thread_setconcurrency()
: WKFThreads.h, WKFThreads.C
- wkf_thread_t
: WKFThreads.h
- wkf_threadlaunch()
: WKFThreads.h, WKFThreads.C
- wkf_threadlaunch_getdata()
: WKFThreads.h, WKFThreads.C
- wkf_threadlaunch_getid()
: WKFThreads.h, WKFThreads.C
- wkf_threadlaunch_next_tile()
: WKFThreads.h, WKFThreads.C
- wkf_threadlaunch_setfatalerror()
: WKFThreads.h, WKFThreads.C
- wkf_threadlaunch_t
: WKFThreads.h
- wkf_threadpool_create()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_destroy()
: WKFThreads.h, WKFThreads.C
- WKF_THREADPOOL_DEVID_CPU
: WKFThreads.h
- WKF_THREADPOOL_DEVLIST_CPUSONLY
: WKFThreads.h
- wkf_threadpool_get_workercount()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_getfatalerror()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_launch()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_next_tile()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_poll()
: WKFThreads.C
- wkf_threadpool_sched_dynamic()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_setfatalerror()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_t
: WKFThreads.h, VMDApp.h
- wkf_threadpool_tile_failed()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_wait()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_worker_devscaletile()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_worker_getdata()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_worker_getdevid()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_worker_getdevspeed()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_worker_getid()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_worker_setdevspeed()
: WKFThreads.h, WKFThreads.C
- wkf_threadpool_workerdata_t
: WKFThreads.h
- WKF_THREADS_INC
: WKFThreads.h
- wkf_tilestack_compact()
: WKFThreads.h, WKFThreads.C
- wkf_tilestack_destroy()
: WKFThreads.h, WKFThreads.C
- wkf_tilestack_empty()
: WKFThreads.h, WKFThreads.C
- WKF_TILESTACK_EMPTY
: WKFThreads.h
- wkf_tilestack_init()
: WKFThreads.h, WKFThreads.C
- wkf_tilestack_pop()
: WKFThreads.h, WKFThreads.C
- wkf_tilestack_popall()
: WKFThreads.h, WKFThreads.C
- wkf_tilestack_push()
: WKFThreads.h, WKFThreads.C
- wkf_timer_create()
: WKFUtils.h, WKFUtils.C
- wkf_timer_destroy()
: WKFUtils.h, WKFUtils.C
- wkf_timer_start()
: WKFUtils.h, WKFUtils.C
- wkf_timer_start_time()
: WKFUtils.h, WKFUtils.C
- wkf_timer_stop()
: WKFUtils.h, WKFUtils.C
- wkf_timer_stop_time()
: WKFUtils.h, WKFUtils.C
- wkf_timer_time()
: WKFUtils.h, WKFUtils.C
- wkf_timer_timenow()
: WKFUtils.h, WKFUtils.C
- wkf_timerhandle
: WKFUtils.h
- WKF_USEINTCPUID
: WKFThreads.C
- WKF_UTILS_INC
: WKFUtils.h
- WKFTHREAD_START_ROUTINE
: WKFThreads.C
- wrap_cuda_get_gpucount()
: CUDAWrapNVML.h, CUDAWrapNVML.cu
- wrap_dlclose()
: CUDAWrapNVML.cu
- wrap_dlopen()
: CUDAWrapNVML.cu
- wrap_dlsym()
: CUDAWrapNVML.cu
- wrap_nvml_create()
: CUDAWrapNVML.h, CUDAWrapNVML.cu
- wrap_nvml_destroy()
: CUDAWrapNVML.h, CUDAWrapNVML.cu
- wrap_nvml_get_cpu_affinity()
: CUDAWrapNVML.h, CUDAWrapNVML.cu
- wrap_nvml_get_fanpcnt()
: CUDAWrapNVML.h, CUDAWrapNVML.cu
- wrap_nvml_get_gpu_name()
: CUDAWrapNVML.h, CUDAWrapNVML.cu
- wrap_nvml_get_gpucount()
: CUDAWrapNVML.h, CUDAWrapNVML.cu
- wrap_nvml_get_power_usage()
: CUDAWrapNVML.h, CUDAWrapNVML.cu
- wrap_nvml_get_tempC()
: CUDAWrapNVML.h, CUDAWrapNVML.cu
- wrap_nvml_set_cpu_affinity()
: CUDAWrapNVML.h, CUDAWrapNVML.cu
- wrap_nvmlDevice_t
: CUDAWrapNVML.h
- wrap_nvmlReturn_enum
: CUDAWrapNVML.h
- wrap_nvmlReturn_t
: CUDAWrapNVML.h
- wrapatomic()
: CUDAFastPBC.cu
- wrapcompound()
: CUDAFastPBC.cu
- WRAPNVML_SUCCESS
: CUDAWrapNVML.h
- write_bin_histogram_map()
: VolMapCreateILS.C
- write_doc
: py_atomsel.C
- write_file()
: Voltool.h, Voltool.C
- write_image_file_rgb3u()
: ImageIO.h, ImageIO.C
- write_image_file_rgb4f()
: ImageIO.h, ImageIO.C
- write_image_file_rgb4u()
: ImageIO.h, ImageIO.C
- write_image_file_rgba4f()
: ImageIO.h, ImageIO.C
- write_image_file_rgba4u()
: ImageIO.h, ImageIO.C
- write_le_int16()
: ImageIO.C
- write_le_int32()
: ImageIO.C
- write_matrix()
: TclMolInfo.C
- write_ss_input_pdb()
: Stride.h, Stride.C
- wt
: msmpot_cuda_latcut.cu
- x -
- y -
- z -
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