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VMD (current) Compound Members
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Here is a list of all class members with links to the class documentation for each member:- _ -
- a -
- a
: iterobject
- a_length
: Timestep
- aa_available()
: DisplayDevice
- aa_enabled()
: DisplayDevice
- aa_off()
: OpenGLRenderer, DisplayDevice
- aa_on()
: OpenGLRenderer, DisplayDevice
- aaAvailable
: DisplayDevice
- aaEnabled
: DisplayDevice
- aalevel
: FileRenderList, FileRenderer
- aaPrevious
: DisplayDevice
- abs_screen_loc_2D()
: OpenGLRenderer, DisplayDevice
- abs_screen_loc_3D()
: OpenGLRenderer, DisplayDevice
- abs_screen_pos()
: DisplayDevice
- act_on_command()
: Win32Joystick, VMDCollab, UIText, UIObject, ToolFltkMenu, Spaceball, SaveTrajectoryFltkMenu, RenderFltkMenu, UIVR, MaterialFltkMenu, MainFltkMenu, IMDMgr, GraphicsFltkMenu, GeometryFltkMenu, FileChooserFltkMenu, DisplayFltkMenu, ColorFltkMenu
- activate()
: MoleculeList
- activate_light()
: Scene
- activate_materials()
: FileRenderer
- activate_menus()
: VMDApp
- active
: UIObject, MoleculeList, DrawMolecule
- actual_radius
: MolData
- add()
: GridList, AtomList, IndexList, FileRenderList
- add_atom()
: Residue, BaseMolecule
- add_bond()
: BaseMolecule, MolAtom
- add_bond_dupcheck()
: BaseMolecule
- add_buttons()
: Tool
- add_cent_trans()
: Displayable
- add_cfunction()
: SymbolTable
- add_child()
: Displayable
- add_color_category()
: Scene
- add_color_item()
: Scene
- add_color_names()
: MoleculeList
- add_cone()
: MoleculeGraphics
- add_coor_file()
: Molecule
- add_custom_singleword()
: SymbolTable
- add_cylinder()
: MoleculeGraphics
- add_feedback()
: Tool
- add_geometry()
: GeometryList
- add_glob_trans()
: Displayable
- add_keyword()
: SymbolTable
- add_line()
: MoleculeGraphics
- add_material()
: MaterialList
- add_menu()
: VMDApp
- add_molecule()
: MoleculeList
- add_name()
: NameList< T >
- add_pickable()
: PickList
- add_pickpoint()
: MoleculeGraphics
- add_plugin()
: PluginMgr
- add_point()
: MoleculeGraphics
- add_rep()
: MoleculeList, DrawMolecule
- add_rot()
: Displayable
- add_singleword()
: SymbolTable
- add_sphere()
: MoleculeGraphics
- add_stringfctn()
: SymbolTable
- add_text()
: MoleculeGraphics
- add_tool_with_USL()
: UIVR
- add_tracker()
: Tool
- add_triangle()
: MoleculeGraphics
- add_tricolor()
: MoleculeGraphics
- add_trinorm()
: MoleculeGraphics
- add_volume_data()
: BaseMolecule
- ADDBOND
: PickModeList, Mouse
- addconstraint()
: VRPNFeedback, Feedback
- addForce()
: Molecule
- addforcefield()
: VRPNFeedback, Feedback
- addLinkagePath()
: SmallRingLinkages
- addPath()
: LinkageEdge
- addPersistentForce()
: Molecule
- addplaneconstraint()
: VRPNFeedback, Tool, Feedback
- addto_far_clip()
: DisplayDevice
- addto_near_clip()
: DisplayDevice
- alignrefpos
: VolMapCreateFastEnergy
- alignsel
: VolMapCreateFastEnergy
- alive()
: SpaceballTracker, VRPNTracker, VRPNFeedback, VRPNButtons, VMDTracker, Tool, FreeVRTracker, FreeVRButtons, CaveTracker, CaveButtons
- allselected
: DispCmdPickPointIndexArray
- alpha
: Timestep
- ALT
: DisplayDevice
- altlocindex
: MolAtom
- altlocNames
: BaseMolecule
- ambient
: VMDDisplayList, Material
- anaface
: MSMSFace
- analyze()
: BaseMolecule
- anim
: VMDApp
- ANIM_DELETE
: Command
- anim_dir()
: Animation
- ANIM_DIRECTION
: Command
- ANIM_DUP
: Command
- ANIM_FORWARD
: Animation
- ANIM_FORWARD1
: Animation
- ANIM_JUMP
: Command
- ANIM_LOOP
: Animation
- ANIM_NEW_FRAME
: Command
- ANIM_NEW_NUM_FRAMES
: Command
- ANIM_ONCE
: Animation
- ANIM_PAUSE
: Animation
- ANIM_READ
: Command
- ANIM_REVERSE
: Animation
- ANIM_REVERSE1
: Animation
- ANIM_ROCK
: Animation
- ANIM_SKIP
: Command
- ANIM_SPEED
: Command
- ANIM_STYLE
: Command
- anim_style()
: Animation
- ANIM_TOTAL_DIRS
: Animation
- ANIM_TOTAL_STYLES
: Animation
- ANIM_WRITE
: Command
- Animation()
: Animation
- animation_dir_name()
: VMDApp
- animation_num_dirs()
: VMDApp
- animation_num_styles()
: VMDApp
- animation_set_dir()
: VMDApp
- animation_set_frame()
: VMDApp
- animation_set_speed()
: VMDApp
- animation_set_stride()
: VMDApp
- animation_set_style()
: VMDApp
- animation_style_name()
: VMDApp
- AnimDir
: Animation
- AnimStyle
: Animation
- app
: VolMapCreate, UIObject, ctxt, PyAtomSelObject, PickModeUser, PickModeMolLabel, PickModeAddBond, GraphicsFltkMenu, DrawMolecule
- append()
: VMDDisplayList, SortableArray< T >, LinkagePath, SmallRing, ResizeArray< T >, Fragment, Displayable, CommandQueue
- append_frame()
: DrawMolecule
- append_text()
: VMDApp
- appendList()
: PlainTextInterp
- appendString()
: PlainTextInterp
- apply_format_to_selected_labels()
: GeometryFltkMenu
- apply_offset_to_selected_labels()
: GeometryFltkMenu
- arclength
: RibbonFrame
- argc
: CmdToolCreate
- argc_m
: VMDApp
- argv_m
: VMDApp
- ArtDisplayDevice()
: ArtDisplayDevice
- aspect()
: DisplayDevice
- Aspect
: DisplayDevice
- aspectratio
: FileRenderList, FileRenderer
- assign_rep()
: Tool
- ATI
: OpenGLExtensions
- atom()
: BaseMolecule
- atom_displayed()
: DrawMolItem, DrawMolecule
- atom_formatted_name()
: GeometryMol
- atom_fragment()
: BaseMolecule
- atom_full_name()
: GeometryMol
- atom_residue()
: BaseMolecule
- atom_sel_mol
: atomsel_ctxt
- atom_short_name()
: GeometryMol
- atomColor
: DrawMolItem
- AtomColor()
: AtomColor
- AtomEntry()
: AtomEntry
- AtomGrid()
: AtomGrid
- AtomGridCell()
: AtomGridCell
- atomicnumber
: MolAtom
- atomids
: MSMSInterface
- AtomList()
: AtomList
- atomNames
: BaseMolecule
- atomparser_node()
: atomparser_node
- atomRep
: DrawMolItem
- AtomRep()
: AtomRep
- atoms
: enthrparms, SmallRing, Residue, enthrparms
- atomSel
: PyAtomSelObject, DrawMolItem
- AtomSel()
: AtomSel
- ATOMSEL_ADDMACRO
: Command
- atomsel_ctxt()
: atomsel_ctxt
- ATOMSEL_DELMACRO
: Command
- atomSelParser
: VMDApp
- atomType
: MolAtom
- atomTypes
: BaseMolecule
- auto_update()
: GraphicsFltkMenu
- autobonds
: FileSpec
- AUX
: DisplayDevice
- avail
: vmdwinjoystick
- axes
: VMDApp
- Axes()
: Axes
- AXES_LOWERLEFT
: Axes
- AXES_LOWERRIGHT
: Axes
- AXES_ORIGIN
: Axes
- axes_set_location()
: VMDApp
- AXES_UPPERLEFT
: Axes
- AXES_UPPERRIGHT
: Axes
- AxesPos
: Axes
- AXESPOS_TOTAL
: Axes
- axis
: Symmetry, CmdRockOn, CmdRotate
- b -
- B2_LEFT
: DisplayDevice
- B2_MIDDLE
: DisplayDevice
- B2_RIGHT
: DisplayDevice
- B_ESC
: DisplayDevice
- B_F1
: DisplayDevice
- B_F10
: DisplayDevice
- B_F11
: DisplayDevice
- B_F12
: DisplayDevice
- B_F2
: DisplayDevice
- B_F3
: DisplayDevice
- B_F4
: DisplayDevice
- B_F5
: DisplayDevice
- B_F6
: DisplayDevice
- B_F7
: DisplayDevice
- B_F8
: DisplayDevice
- B_F9
: DisplayDevice
- B_LEFT
: Mouse, DisplayDevice
- b_length
: Timestep
- B_MIDDLE
: Mouse, DisplayDevice
- B_NONE
: Mouse
- B_RIGHT
: Mouse, DisplayDevice
- BACKBONE
: AtomColor
- backColor
: FileRenderer
- background_mode()
: Scene, DisplayDevice
- backgroundmode
: DisplayDevice
- BAD_RANGE
: MSMSInterface
- BaseMolecule()
: BaseMolecule
- basisa
: MolData
- basisb
: MolData
- basisc
: MolData
- BEADS
: AtomRep
- begFrame
: CoorPluginData, CmdAnimDelete, CmdAnimWriteFile
- beta
: BaseMolecule, Timestep
- BETA
: AtomColor
- bonded()
: MolAtom
- bondorders()
: BaseMolecule
- BONDRAD
: AtomRep
- BONDRES
: AtomRep
- bonds
: MolAtom
- BONDS
: AtomRep
- bondTo
: MolAtom
- boxatom
: bondsearchthrparms
- bucket
: inthash_t, hash_t
- build()
: AtomGrid
- build3Dmipmaps()
: OpenGLRenderer
- buttonchanged
: vmdwinjoystick
- buttons
: vmdwinjoystick
- Buttons()
: DisplayDevice, Buttons
- BY
: CmdScale, CmdTranslate, CmdRotate, CmdRotMat
- byOrTo
: CmdScale, CmdTranslate, CmdRotate, CmdRotMat
- c -
- c_length
: Timestep
- cache_mode()
: DisplayDevice
- cache_name()
: DisplayDevice
- cacheMode
: DisplayDevice
- cacheModes
: DisplayDevice
- cacheNames
: DisplayDevice
- cacheskip
: Displayable, VMDDisplayList
- calc_eyedir()
: DisplayDevice
- calc_frustum()
: DisplayDevice
- calculate()
: GeometrySpring, GeometryMol, GeometryDihedral, GeometryBond, GeometryAngle
- calculate_all()
: GeometryMol
- calculate_max_radius()
: VolMapCreate
- calculate_minmax()
: VolMapCreate
- calculateTexgenPlanes()
: VolumeTexture
- can_read_bonds()
: MolFilePlugin
- can_read_graphics()
: MolFilePlugin
- can_read_metadata()
: MolFilePlugin
- can_read_structure()
: MolFilePlugin
- can_read_timesteps()
: MolFilePlugin
- can_read_volumetric()
: MolFilePlugin
- can_write_bonds()
: MolFilePlugin
- can_write_structure()
: MolFilePlugin
- can_write_timesteps()
: MolFilePlugin
- cancel()
: Molecule
- cancelbutton
: FrameSelector
- caps
: vmdwinjoystick
- category
: CmdColorItem
- category_index()
: Scene
- category_item_index()
: Scene
- category_item_name()
: Scene
- category_item_value()
: Scene
- category_name()
: Scene
- CaveButtons()
: CaveButtons
- CaveDisplayDevice()
: CaveDisplayDevice
- CaveScene()
: CaveScene
- CaveTracker()
: CaveTracker
- cb()
: PBCControls
- cbits
: compile_data
- cCatStr
: CmdColorName
- cColStr
: CmdColorName
- cell_axes()
: VolumetricData
- cell_dirs()
: VolumetricData
- cell_lengths()
: VolumetricData
- cellIndex
: GeometryMol
- cent_trans_off()
: Displayable
- cent_trans_on()
: Displayable
- cent_translating()
: Displayable
- CENTER
: PickModeList, Mouse
- center
: VMDClipPlane
- center_all_molecules()
: MoleculeList
- center_from_top_molecule_reps()
: MoleculeList
- center_top_molecule()
: MoleculeList
- centt
: Displayable
- CHAIN
: AtomColor
- chainindex
: MolAtom
- chainNames
: BaseMolecule
- change()
: AtomSel, AtomRep, AtomColor
- change_center()
: Displayable
- change_color()
: DrawMolItem
- change_interp()
: UIText
- change_material()
: Displayable
- change_pbc()
: DrawMolItem, DrawMolecule
- change_rep()
: MoleculeList, DrawMolItem, DrawMolecule
- change_repcolor()
: MoleculeList
- change_repmat()
: MoleculeList
- change_repmethod()
: MoleculeList
- change_repsel()
: MoleculeList
- change_sel()
: DrawMolItem
- change_ss()
: DrawMolItem
- change_traj()
: DrawMolItem
- change_ts()
: DrawMolItem, DrawMolecule
- change_type()
: UIVR
- charge()
: BaseMolecule
- CHARGE
: AtomColor
- check_event()
: Win32Joystick, VMDCollab, UIText, UIObject, Spaceball, UIVR, Tool, Mouse, IMDMgr, Animation
- check_events()
: CommandQueue
- check_mol()
: GeometryMol
- check_pickable()
: MoleculeList
- checkpoint_freq
: VolMapCreate
- checkpoint_name
: VolMapCreate
- child()
: Displayable
- child_index()
: Displayable
- children
: Displayable
- choose_buttons()
: ToolFltkMenu
- choose_feedback()
: ToolFltkMenu
- choose_tracker()
: ToolFltkMenu
- chop()
: JString
- clear()
: Surf, SmallRingLinkages, SmallRing, ResizeArray< T >, OpenGLRenderer, MSMSInterface, IsoSurface, IsoContour, myFl_Chart, DisplayDevice
- clear_bonds()
: BaseMolecule
- clear_changed()
: DisplayColor
- clear_rep()
: Tool
- clear_text()
: VMDApp
- clip_center
: FileRenderer
- clip_color
: FileRenderer
- clip_mode
: FileRenderer
- clip_normal
: FileRenderer
- clip_width()
: DisplayDevice
- clipplane()
: VMDDisplayList, Displayable
- clipplanes
: VMDDisplayList
- clockratekhz
: cudadevprops
- clone()
: SpaceballTracker, VRPNTracker, VRPNFeedback, VRPNButtons, VMDTracker, FreeVRTracker, FreeVRButtons, Feedback, CaveTracker, CaveButtons, Buttons
- close_file()
: SnapshotDisplayDevice, LibTachyonDisplayDevice, FileRenderer
- closed()
: SmallRing
- CMD_AXES
: Command
- CMD_STAGE
: Command
- CmdAddAtomSelMacro()
: CmdAddAtomSelMacro
- CmdAnimDelete()
: CmdAnimDelete
- CmdAnimDir()
: CmdAnimDir
- CmdAnimDup()
: CmdAnimDup
- CmdAnimJump()
: CmdAnimJump
- CmdAnimNewFrame()
: CmdAnimNewFrame
- CmdAnimNewNumFrames()
: CmdAnimNewNumFrames
- CmdAnimSkip()
: CmdAnimSkip
- CmdAnimSpeed()
: CmdAnimSpeed
- CmdAnimStyle()
: CmdAnimStyle
- CmdAnimWriteFile()
: CmdAnimWriteFile
- cmdbuf
: GraphicsFltkRep
- CmdColorChange()
: CmdColorChange
- CmdColorItem()
: CmdColorItem
- CmdColorName()
: CmdColorName
- CmdColorScaleColors()
: CmdColorScaleColors
- CmdColorScaleMethod()
: CmdColorScaleMethod
- CmdColorScaleSettings()
: CmdColorScaleSettings
- CmdDelAtomSelMacro()
: CmdDelAtomSelMacro
- CmdDisplayAAOn()
: CmdDisplayAAOn
- CmdDisplayAxes()
: CmdDisplayAxes
- CmdDisplayBackgroundGradientOn()
: CmdDisplayBackgroundGradientOn
- CmdDisplayCacheMode()
: CmdDisplayCacheMode
- CmdDisplayClip()
: CmdDisplayClip
- CmdDisplayClipFar()
: CmdDisplayClipFar
- CmdDisplayClipFarRel()
: CmdDisplayClipFarRel
- CmdDisplayClipNear()
: CmdDisplayClipNear
- CmdDisplayClipNearRel()
: CmdDisplayClipNearRel
- CmdDisplayCueDensity()
: CmdDisplayCueDensity
- CmdDisplayCueEnd()
: CmdDisplayCueEnd
- CmdDisplayCueMode()
: CmdDisplayCueMode
- CmdDisplayCueStart()
: CmdDisplayCueStart
- CmdDisplayCullingOn()
: CmdDisplayCullingOn
- CmdDisplayDepthcueOn()
: CmdDisplayDepthcueOn
- CmdDisplayEyesep()
: CmdDisplayEyesep
- CmdDisplayFocallen()
: CmdDisplayFocallen
- CmdDisplayFPSOn()
: CmdDisplayFPSOn
- CmdDisplayLightHL()
: CmdDisplayLightHL
- CmdDisplayLightMove()
: CmdDisplayLightMove
- CmdDisplayLightOn()
: CmdDisplayLightOn
- CmdDisplayLightRot()
: CmdDisplayLightRot
- CmdDisplayProj()
: CmdDisplayProj
- CmdDisplayRenderMode()
: CmdDisplayRenderMode
- CmdDisplayScreenDistance()
: CmdDisplayScreenDistance
- CmdDisplayScreenHeight()
: CmdDisplayScreenHeight
- CmdDisplayStageLocation()
: CmdDisplayStageLocation
- CmdDisplayStagePanels()
: CmdDisplayStagePanels
- CmdDisplayStereo()
: CmdDisplayStereo
- CmdIMDConnect()
: CmdIMDConnect
- CmdIMDRate()
: CmdIMDRate
- CmdIMDRateCommand
: CmdIMDRate
- CmdIMDSim()
: CmdIMDSim
- CmdIMDSimCommand
: CmdIMDSim
- CmdLabelAdd()
: CmdLabelAdd
- CmdLabelAddspring()
: CmdLabelAddspring
- CmdLabelDelete()
: CmdLabelDelete
- CmdLabelShow()
: CmdLabelShow
- CmdLabelTextFormat()
: CmdLabelTextFormat
- CmdLabelTextOffset()
: CmdLabelTextOffset
- CmdLabelTextSize()
: CmdLabelTextSize
- cmdList
: Displayable
- CmdMaterialAdd()
: CmdMaterialAdd
- CmdMaterialChange()
: CmdMaterialChange
- CmdMaterialDefault()
: CmdMaterialDefault
- CmdMaterialDelete()
: CmdMaterialDelete
- CmdMaterialRename()
: CmdMaterialRename
- CmdMenuExtensionAdd()
: CmdMenuExtensionAdd
- CmdMenuExtensionRemove()
: CmdMenuExtensionRemove
- CmdMenuShow()
: CmdMenuShow
- CmdMolActive()
: CmdMolActive
- CmdMolAddRep()
: CmdMolAddRep
- CmdMolBondsRecalc()
: CmdMolBondsRecalc
- CmdMolCancel()
: CmdMolCancel
- CmdMolChangeRep()
: CmdMolChangeRep
- CmdMolChangeRepItem()
: CmdMolChangeRepItem
- CmdMolColor()
: CmdMolColor
- CmdMolDelete()
: CmdMolDelete
- CmdMolDeleteRep()
: CmdMolDeleteRep
- CmdMolDrawFrames()
: CmdMolDrawFrames
- CmdMolFix()
: CmdMolFix
- CmdMolLoad()
: CmdMolLoad
- CmdMolMaterial()
: CmdMolMaterial
- CmdMolNew()
: CmdMolNew
- CmdMolNumPeriodic()
: CmdMolNumPeriodic
- CmdMolOn()
: CmdMolOn
- CmdMolReanalyze()
: CmdMolReanalyze
- CmdMolRename()
: CmdMolRename
- CmdMolRep()
: CmdMolRep
- CmdMolRepColorUpdate()
: CmdMolRepColorUpdate
- CmdMolRepSelUpdate()
: CmdMolRepSelUpdate
- CmdMolScaleMinmax()
: CmdMolScaleMinmax
- CmdMolSelect()
: CmdMolSelect
- CmdMolShowPeriodic()
: CmdMolShowPeriodic
- CmdMolShowRep()
: CmdMolShowRep
- CmdMolSmoothRep()
: CmdMolSmoothRep
- CmdMolSSRecalc()
: CmdMolSSRecalc
- CmdMolTop()
: CmdMolTop
- CmdMolVolume()
: CmdMolVolume
- CmdMouseMode()
: CmdMouseMode
- CmdPluginUpdate()
: CmdPluginUpdate
- cmdQueue
: UIObject
- cmdqueue
: GeometryMol
- CmdRender()
: CmdRender
- CmdRenderOption()
: CmdRenderOption
- CmdResetView()
: CmdResetView
- CmdRockOff()
: CmdRockOff
- CmdRockOn()
: CmdRockOn
- CmdRotate()
: CmdRotate
- CmdRotMat()
: CmdRotMat
- CmdScale()
: CmdScale
- cmdStr
: AtomSel, AtomRep, AtomColor
- cmdText
: Command
- CmdToolAddDevice()
: CmdToolAddDevice
- CmdToolCallback()
: CmdToolCallback
- CmdToolChange()
: CmdToolChange
- CmdToolCreate()
: CmdToolCreate
- CmdToolDelete()
: CmdToolDelete
- CmdToolDeleteDevice()
: CmdToolDeleteDevice
- CmdToolOffset()
: CmdToolOffset
- CmdToolRep()
: CmdToolRep
- CmdToolScale()
: CmdToolScale
- CmdToolScaleForce()
: CmdToolScaleForce
- CmdToolScaleSpring()
: CmdToolScaleSpring
- CmdTranslate()
: CmdTranslate
- Cmdtype
: Command
- cNameStr
: CmdColorName
- code
: real_pcre
- COL_REGEN
: DrawMolItem
- colindex_visible()
: GraphicsFltkMenu
- collintol
: Symmetry
- color
: MoleculeList, VMDClipPlane, FileRenderer::LightState, DispCmdColorIndex, DepthSortObject, CmdColorChange, AtomColor
- COLOR
: MoleculeGraphics, CmdMolChangeRepItem
- COLOR_ADD_ITEM
: Command
- color_add_item()
: VMDApp
- color_category()
: VMDApp
- color_category_item()
: VMDApp
- COLOR_CHANGE
: Command
- color_changed()
: DisplayColor, Displayable
- color_changename()
: VMDApp
- color_changevalue()
: VMDApp
- color_default_value()
: VMDApp, Scene
- color_get_from_name()
: VMDApp
- color_get_restype()
: VMDApp
- color_id()
: DisplayColor
- color_index()
: VMDApp, Scene, AtomColor
- color_mapping()
: VMDApp
- COLOR_NAME
: Command
- color_name()
: VMDApp, Scene
- color_rgb_changed()
: Displayable
- color_scale_changed()
: Displayable
- COLOR_SCALE_COLORS
: Command
- COLOR_SCALE_METHOD
: Command
- COLOR_SCALE_SETTINGS
: Command
- color_set_restype()
: VMDApp
- color_value()
: VMDApp, Scene
- colorCatIndex
: MoleculeList
- colorData
: DisplayDevice
- ColorFltkMenu()
: ColorFltkMenu
- COLORID
: AtomColor
- colorIndex
: FileRenderer
- ColorMethod
: AtomColor
- colors
: CmdColorScaleColors
- colorscale_info()
: VMDApp
- colorscale_method()
: Scene
- colorscale_method_current()
: VMDApp
- colorscale_method_index()
: VMDApp
- colorscale_method_name()
: VMDApp, Scene
- colorscale_setmethod()
: VMDApp
- colorscale_setvalues()
: VMDApp
- colorscale_value()
: Scene
- ColorscaleImage()
: ColorscaleImage
- com_index()
: GeometryMol
- COMBINE_AVG
: VolMapCreate
- COMBINE_MAX
: VolMapCreate
- COMBINE_MIN
: VolMapCreate
- COMBINE_PMF
: VolMapCreate
- COMBINE_STDEV
: VolMapCreate
- CombineType
: VolMapCreate
- combo_addframe()
: VolMapCreate
- combo_begin()
: VolMapCreate
- combo_end()
: VolMapCreate
- combo_export()
: VolMapCreate
- comIndex
: GeometryMol
- Command()
: Command
- command_wanted()
: UIObject
- CommandQueue()
: CommandQueue
- commandQueue
: VMDApp
- comment()
: VrmlDisplayDevice, Vrml2DisplayDevice, TachyonDisplayDevice, RenderManDisplayDevice, RayShadeDisplayDevice, RadianceDisplayDevice, R3dDisplayDevice, PSDisplayDevice, POV3DisplayDevice, GelatoDisplayDevice, FileRenderer, ArtDisplayDevice
- commentBuffer
: DrawMolItem
- compare
: JString
- CompileShaders()
: OpenGLShader
- component
: DrawMolecule, MSMSFace
- component_from_pickable()
: DrawMolecule
- components()
: DrawMolecule
- compute()
: Surf, IsoSurface, IsoContour
- compute_all()
: VolMapCreate
- compute_end()
: VolMapCreateSlowEnergy, VolMapCreateFastEnergy, VolMapCreate
- compute_frame()
: VolMapCreateCoulombPotential, VolMapCreateSlowEnergy, VolMapCreateFastEnergy, VolMapCreateDistance, VolMapCreateOccupancy, VolMapCreateInterp, VolMapCreateDensity, VolMapCreateMask, VolMapCreate
- compute_from_file()
: MSMSInterface
- compute_from_socket()
: MSMSInterface
- compute_init()
: VolMapCreateCoulombPotential, VolMapCreateSlowEnergy, VolMapCreateFastEnergy, VolMapCreateDistance, VolMapCreateOccupancy, VolMapCreateInterp, VolMapCreateDensity, VolMapCreateMask, VolMapCreate
- compute_volume_gradient()
: VolumetricData, BaseMolecule
- COMPUTED
: MSMSInterface
- computed_frames
: VolMapCreate
- CONE
: MoleculeGraphics
- cone()
: VrmlDisplayDevice, Vrml2DisplayDevice, RenderManDisplayDevice, RayShadeDisplayDevice, RadianceDisplayDevice, POV3DisplayDevice, FileRenderer, ArtDisplayDevice
- CONFORMATION
: AtomColor
- connect()
: VMDCollab, IMDMgr
- connected()
: IMDMgr
- constant()
: Matrix4
- CONTROL
: DisplayDevice
- convert()
: symbol_data
- coord
: AtomData
- CoorData()
: CoorData
- CoorDataState
: CoorData
- coordinates()
: AtomSel
- coords
: MSMSInterface, MolData
- CoorPluginData()
: CoorPluginData
- coplantol
: Symmetry
- copy()
: LinkagePath, SmallRing
- count
: MolData
- count_bonds()
: BaseMolecule
- cov()
: MoleculeGraphics, DrawMolecule
- cpDown
: DisplayDevice
- CPK
: AtomRep
- cpLeft
: DisplayDevice
- cpRight
: DisplayDevice
- cpUp
: DisplayDevice
- create_cmd_list()
: GeometrySpring, GeometryMol, GeometryDihedral, GeometryBond, GeometryAtom, GeometryAngle
- create_colorcmd()
: GraphicsFltkMenu
- create_matcmd()
: GraphicsFltkMenu
- create_multiframecmd()
: GraphicsFltkMenu
- create_repcmd()
: GraphicsFltkMenu
- create_selcmd()
: GraphicsFltkMenu
- create_text()
: CmdToolCallback, CmdToolDeleteDevice, CmdToolAddDevice, CmdToolRep, CmdToolOffset, CmdToolScaleSpring, CmdToolScaleForce, CmdToolScale, CmdToolDelete, CmdToolChange, CmdToolCreate, Command, CmdRockOff, CmdRockOn, CmdScale, CmdTranslate, CmdRotate, CmdRotMat, CmdRender, CmdPluginUpdate, CmdMolShowRep, CmdMolSmoothRep, CmdMolDrawFrames, CmdMolScaleMinmax, CmdMolNumPeriodic, CmdMolShowPeriodic, CmdMolRename, CmdMolSSRecalc, CmdMolBondsRecalc, CmdMolReanalyze, CmdMolDeleteRep, CmdMolRepColorUpdate, CmdMolRepSelUpdate, CmdMolChangeRepItem, CmdMolChangeRep, CmdMolAddRep, CmdMolMaterial, CmdMolColor, CmdMolRep, CmdMolSelect, CmdMolTop, CmdMolOn, CmdMolFix, CmdMolActive, CmdMolDelete, CmdMolCancel, CmdMolLoad, CmdMenuShow, CmdMaterialDefault, CmdMaterialDelete, CmdMaterialChange, CmdMaterialRename, CmdMaterialAdd, CmdLabelTextFormat, CmdLabelTextOffset, CmdLabelTextSize, CmdLabelDelete, CmdLabelShow, CmdLabelAddspring, CmdLabelAdd, CmdIMDRate, CmdIMDSim, CmdIMDConnect, CmdDisplayLightMove, CmdDisplayLightRot, CmdDisplayLightHL, CmdDisplayLightOn, CmdDisplayStagePanels, CmdDisplayStageLocation, CmdDisplayAxes, CmdDisplayCueDensity, CmdDisplayCueEnd, CmdDisplayCueStart, CmdDisplayCueMode, CmdDisplayClip, CmdDisplayFPSOn, CmdDisplayBackgroundGradientOn, CmdDisplayCullingOn, CmdDisplayDepthcueOn, CmdDisplayAAOn, CmdDisplayScreenDistance, CmdDisplayScreenHeight, CmdDisplayFocallen, CmdDisplayEyesep, CmdDisplayProj, CmdDisplayRenderMode, CmdDisplayCacheMode, CmdDisplayStereo, CmdResetView, CmdColorItem, CmdColorScaleColors, CmdColorScaleSettings, CmdColorScaleMethod, CmdColorChange, CmdColorName, CmdAnimDup, CmdAnimDelete, CmdAnimWriteFile, CmdAnimSpeed, CmdAnimSkip, CmdAnimJump, CmdAnimStyle, CmdAnimDir
- create_tool()
: ToolFltkMenu
- create_window()
: VMDTkMenu
- ctxt()
: ctxt
- ctypes
: match_data, compile_data
- cubeindex
: GRIDCELL, SQUARECELL
- cuda
: VMDApp
- CUDAAccel()
: CUDAAccel
- CUE_EXP
: DisplayDevice
- CUE_EXP2
: DisplayDevice
- CUE_LINEAR
: DisplayDevice
- cue_mode_name()
: DisplayDevice
- cueDensity
: DisplayDevice
- cueEnd
: DisplayDevice
- cueing_available()
: DisplayDevice
- cueing_enabled()
: DisplayDevice
- cueing_off()
: OpenGLRenderer, DisplayDevice
- cueing_on()
: OpenGLRenderer, DisplayDevice
- cueingAvailable
: DisplayDevice
- cueingEnabled
: DisplayDevice
- cueMode
: DisplayDevice
- CueMode
: DisplayDevice
- cueStart
: DisplayDevice
- culling_available()
: DisplayDevice
- culling_enabled()
: DisplayDevice
- culling_off()
: OpenGLRenderer, DisplayDevice
- culling_on()
: OpenGLRenderer, DisplayDevice
- cullingAvailable
: DisplayDevice
- cullingEnabled
: DisplayDevice
- curColor
: GeomListStruct
- curformat
: FileRenderer
- curpath
: PluginMgr
- curr_material()
: Displayable
- current()
: DrawMolecule
- current_color_use()
: AtomColor
- current_pick_mode()
: PickModeList
- cursor
: glxdata
- CursorCodes
: DisplayDevice
- custom_singleword_name()
: SymbolTable
- cx
: glxdata
- CYLINDER
: MoleculeGraphics
- cylinder()
: VrmlDisplayDevice, Vrml2DisplayDevice, TachyonDisplayDevice, RenderManDisplayDevice, RayShadeDisplayDevice, RadianceDisplayDevice, R3dDisplayDevice, POV3DisplayDevice, OpenGLRenderer, LibTachyonDisplayDevice, GelatoDisplayDevice, FileRenderer, ArtDisplayDevice
- cylinderRes
: DisplayDevice
- d -
- d
: VMDDIR
- Data
: NameList< T >
- data
: NameList< T >, VolumetricData, VolMap, inthash_node_t, hash_node_t, DispCmdDataBlock
- dataBlock
: OpenGLRenderer, FileRenderer
- datamax
: VolumetricData
- datamin
: VolumetricData
- dataname
: VolMap
- dataset
: GraphicsFltkRepVolumetric
- dataset_append()
: GraphicsFltkRepVolumetric
- dataset_clear()
: GraphicsFltkRepVolumetric
- deactivate_materials()
: FileRenderer
- deactivate_uitext_stdin()
: VMDApp
- default_beta()
: BaseMolecule
- default_charge()
: BaseMolecule
- default_color()
: MoleculeList
- default_exec_string()
: FileRenderer
- default_filename()
: FileRenderer
- default_mass()
: BaseMolecule
- default_material()
: MoleculeList
- default_occup()
: BaseMolecule
- default_radius()
: BaseMolecule
- default_representation()
: MoleculeList
- default_selection()
: MoleculeList
- defaultColor
: GeomListStruct
- defaultCommandLine
: FileRenderer
- defaultFilename
: FileRenderer
- defcolor
: CmdColorItem
- define_light()
: Scene
- define_volume_texture()
: TachyonDisplayDevice, FileRenderer
- defValue
: AtomRepDataInfo
- deg
: CmdRockOn, CmdRotate
- del_all_molecules()
: MoleculeList
- del_geometry()
: GeometryList
- del_molecule()
: MoleculeList
- del_rep()
: MoleculeList, DrawMolecule
- delete_all()
: MoleculeGraphics
- delete_frame()
: DrawMolecule
- delete_id()
: MoleculeGraphics
- delete_material()
: MaterialList, Displayable
- delete_tool()
: ToolFltkMenu
- deleteUnused()
: OpenGLCache
- delta
: VolMapCreate
- depthcue_set_density()
: VMDApp
- depthcue_set_end()
: VMDApp
- depthcue_set_mode()
: VMDApp
- depthcue_set_start()
: VMDApp
- DepthSortObject()
: DepthSortObject
- DETACH
: CmdIMDSim
- detach()
: IMDSimThread, IMDSimBlocking, IMDSim, IMDMgr
- device_clock_ghz()
: CUDAAccel
- device_membytes()
: CUDAAccel
- device_name()
: SpaceballTracker, VRPNTracker, VRPNFeedback, VRPNButtons, VMDTracker, FreeVRTracker, FreeVRButtons, Feedback, CaveTracker, CaveButtons, Buttons, CUDAAccel
- device_overlap()
: CUDAAccel
- device_sm_count()
: CUDAAccel
- device_version_major()
: CUDAAccel
- device_version_minor()
: CUDAAccel
- deviceid
: busbwthrparms, maddthrparms
- dhmbsec
: busbwthrparms
- diffuse
: VMDDisplayList, Material
- DIHETERO
: VolMapCreateSlowEnergy, VolMapCreateFastEnergy
- DIHOMO
: VolMapCreateSlowEnergy, VolMapCreateFastEnergy
- dim
: VMDTracker
- dimension()
: VMDTracker, Tool
- disable_stencil_stereo()
: OpenGLRenderer
- disconnect()
: VMDCollab, IMDSim
- DISP_ANTIALIAS
: Command
- DISP_BACKGROUNDGRADIENT
: Command
- DISP_CACHEMODE
: Command
- DISP_CLIP
: Command
- DISP_CUEDENSITY
: Command
- DISP_CUEEND
: Command
- DISP_CUEMODE
: Command
- DISP_CUESTART
: Command
- DISP_CULLING
: Command
- DISP_DEPTHCUE
: Command
- DISP_EYESEP
: Command
- DISP_FOCALLEN
: Command
- DISP_FPS
: Command
- DISP_LIGHT_HL
: Command
- DISP_LIGHT_MOVE
: Command
- DISP_LIGHT_ON
: Command
- DISP_LIGHT_ROT
: Command
- DISP_PROJ
: Command
- DISP_RENDERMODE
: Command
- DISP_RESETVIEW
: Command
- DISP_SCRDIST
: Command
- DISP_SCRHEIGHT
: Command
- DISP_STEREO
: Command
- DispCmdCylinder()
: DispCmdCylinder
- display
: VMDApp
- display_get_screen_distance()
: VMDApp
- display_get_screen_height()
: VMDApp
- display_get_size()
: VMDApp
- display_line()
: GeometryMol
- display_set_aa()
: VMDApp
- display_set_background_mode()
: VMDApp
- display_set_cachemode()
: VMDApp
- display_set_culling()
: VMDApp
- display_set_depthcue()
: VMDApp
- display_set_eyesep()
: VMDApp
- display_set_farclip()
: VMDApp
- display_set_focallen()
: VMDApp
- display_set_fps()
: VMDApp
- display_set_nearclip()
: VMDApp
- display_set_position()
: VMDApp
- display_set_projection()
: VMDApp
- display_set_rendermode()
: VMDApp
- display_set_screen_distance()
: VMDApp
- display_set_screen_height()
: VMDApp
- display_set_size()
: VMDApp
- display_set_stereo()
: VMDApp
- display_string()
: GeometryMol
- display_titlescreen()
: VMDApp
- display_update()
: VMDApp
- display_update_cb()
: TextInterp
- display_update_on()
: VMDApp
- display_update_status()
: VMDApp
- display_update_ui()
: VMDApp
- Displayable()
: Displayable
- DisplayColor()
: DisplayColor
- DisplayDevice()
: DisplayDevice
- displayed()
: MoleculeList, Displayable
- DisplayEye
: DisplayDevice
- DisplayFltkMenu()
: DisplayFltkMenu
- displaylistcache
: OpenGLRenderer
- DisplayRocker()
: DisplayRocker
- dist
: DepthSortObject
- distance_to_screen()
: DisplayDevice
- do_activate_light()
: OpenGLRenderer, FileRenderer, DisplayDevice
- do_callback()
: PickSelectionEvent, MouseModeEvent, GraphLabelEvent, LogfileEvent, HelpEvent, TimestepEvent, TrajectoryReadEvent, PickAtomCallbackEvent, PickGraphicsEvent, PickAtomEvent, PickValueEvent, MousePositionEvent, MoleculeEvent, InitializeStructureEvent, FrameEvent, PythonEvalEvent, TclEvalEvent, UserKeyEvent, InterpEvent
- do_color_changed()
: Stage, DisplayColor, GeometryList, FPS, DrawMolItem, DrawForce, Displayable, Axes
- do_color_rgb_changed()
: DisplayColor, DrawMolItem, Displayable
- do_color_scale_changed()
: DrawMolItem, Displayable
- do_dataset_append()
: GraphicsFltkRepVolumeSlice, GraphicsFltkRepIsosurface, GraphicsFltkRepVolumetric
- do_dataset_clear()
: GraphicsFltkRepVolumeSlice, GraphicsFltkRepIsosurface, GraphicsFltkRepVolumetric
- do_define_light()
: OpenGLRenderer, FileRenderer, DisplayDevice
- do_dialog()
: FrameSelector
- do_event()
: SpringTool, TugTool, Tool, RotateTool, PrintTool, PinchTool, JoystickTool, GrabTool
- do_off()
: VMDTkMenu, VMDTkinterMenu, VMDFltkMenu, UIObject
- do_on()
: VMDTkMenu, VMDTkinterMenu, VMDFltkMenu, UIObject
- do_reposition_window()
: OpenGLDisplayDevice, DisplayDevice
- do_reset()
: GraphicsFltkRepVolumeSlice, GraphicsFltkRepIsosurface, GraphicsFltkRepSurf, GraphicsFltkRepHBonds, GraphicsFltkRepMSMS, GraphicsFltkRepSolvent, GraphicsFltkRepNewCartoon, GraphicsFltkRepCartoon, GraphicsFltkRepNewRibbons, GraphicsFltkRepRibbons, GraphicsFltkRepLicorice, GraphicsFltkRepVDW, GraphicsFltkRepPoints, GraphicsFltkRepCPK, GraphicsFltkRepDynamicBonds, GraphicsFltkRepBonds, GraphicsFltkRepLines, GraphicsFltkRep
- do_resize_window()
: OpenGLDisplayDevice, FltkOpenGLDisplayDevice, DisplayDevice
- do_save()
: SaveTrajectoryFltkMenu
- do_start()
: SpaceballTracker, VRPNTracker, VRPNFeedback, VRPNButtons, VMDTracker, FreeVRTracker, FreeVRButtons, Feedback, CaveTracker, CaveButtons, Buttons
- do_update
: AtomSel, AtomColor
- do_use_colors()
: FileRenderer, DisplayDevice
- DoCell()
: IsoSurface, IsoContour
- doCent
: Displayable
- doEvent()
: TextInterp, TclTextInterp, PythonTextInterp
- doGlob
: Displayable
- dograb()
: Tool
- doInit()
: TextInterp, TclTextInterp
- DONE
: CoorData
- done_waiting()
: TclTextInterp
- doRot
: Displayable
- doScale
: Displayable
- doTkUpdate()
: TextInterp, TclTextInterp, PythonTextInterp
- DOTTED
: AtomRep
- double_fctn
: SymbolTableElement
- doublesided
: DispCmdTriStrips
- downshift
: inthash_t, hash_t
- dpl_initialized
: OpenGLRenderer
- dpy
: glxdata
- dpyScreen
: glxdata
- draw()
: Scene, MainFltkMenu, My_Fl_Positioner, myFl_Chart, FreeVRScene, myglwindow, Displayable, ColorscaleImage, CaveScene
- draw_background_gradient()
: OpenGLRenderer
- draw_finished()
: Scene
- draw_prepare()
: Displayable
- DrawForce()
: DrawForce
- DrawMolecule()
: DrawMolecule
- DrawMoleculeMonitor()
: DrawMoleculeMonitor
- DrawMolItem()
: DrawMolItem
- DrawTool()
: DrawTool
- dtool
: Tool
- dup()
: Stack< T >
- duplicate_frame()
: DrawMolecule
- dval
: symbol_data, atomparser_node, YYSTYPE
- DYNAMICBONDS
: AtomRep
- e -
- Eangle
: IMDEnergies
- Ebond
: IMDEnergies
- Edihe
: IMDEnergies
- Eelec
: IMDEnergies
- Eimpr
: IMDEnergies
- ELEMENT
: AtomColor
- element_id()
: MoleculeGraphics
- enable_stencil_stereo()
: OpenGLRenderer
- encache()
: OpenGLCache
- end_clipgroup()
: TachyonDisplayDevice, POV3DisplayDevice, LibTachyonDisplayDevice, FileRenderer
- end_match_ptr
: match_data
- end_offset_top
: match_data
- end_ring
: LinkagePath
- end_subject
: match_data
- endFrame
: CoorPluginData, CmdAnimDelete, CmdAnimWriteFile
- endonly
: match_data
- endtime
: vmd_timer
- energy
: Timestep
- entries
: inthash_t, hash_t
- Epot
: IMDEnergies
- err
: MSMSInterface
- errorcode
: match_data
- Etot
: IMDEnergies
- evalFile()
: TextInterp, TclTextInterp, PythonTextInterp
- evalString()
: TextInterp, TclTextInterp, PythonTextInterp, PlainTextInterp
- evaluate()
: ParseTree
- Evdw
: IMDEnergies
- EventCodes
: DisplayDevice
- execCmd
: FileRenderer
- execute_all()
: CommandQueue
- exists
: vmdwinjoystick
- exitFlag
: VMDApp
- ext
: OpenGLShader, OpenGLRenderer
- extcmd
: CmdRender
- extension()
: MolFilePlugin
- extra
: BaseMolecule
- extra_type
: atomparser_node
- eye_dist()
: DisplayDevice
- eyeDir
: DisplayDevice
- eyeDist
: DisplayDevice
- eyePos
: DisplayDevice
- eyeSep
: DisplayDevice
- eyesep()
: DisplayDevice
- eyeSepDir
: DisplayDevice
- f -
- f
: Surf, IsoSurface, IsoContour
- faces
: MSMSInterface
- far_clip()
: DisplayDevice
- farClip
: DisplayDevice
- fcc
: compile_data
- fctn
: SymbolTableElement
- fctns
: SymbolTable
- Feedback()
: Feedback
- file_in_progress()
: Molecule
- filebonds
: FileSpec
- FileChooserFltkMenu()
: FileChooserFltkMenu
- filedraw()
: Scene
- filename
: CmdRender
- fileName
: CmdAnimWriteFile
- filerender_aalevel()
: VMDApp
- filerender_aspectratio()
: VMDApp
- filerender_cur_format()
: VMDApp
- filerender_default_filename()
: VMDApp
- filerender_default_option()
: VMDApp
- filerender_get_format()
: VMDApp
- filerender_has_antialiasing()
: VMDApp
- filerender_has_imagesize()
: VMDApp
- filerender_imagesize()
: VMDApp
- filerender_name()
: VMDApp
- filerender_num()
: VMDApp
- filerender_numformats()
: VMDApp
- filerender_option()
: VMDApp
- filerender_render()
: VMDApp
- filerender_set_format()
: VMDApp
- filerender_valid()
: VMDApp
- FileRenderer()
: FileRenderer
- FileRenderList()
: FileRenderList
- FileSpec()
: FileSpec
- fileType
: CmdAnimWriteFile
- find()
: ResizeArray< T >, FileRenderList, IdList, AtomColor
- find_3D_from_2D()
: OpenGLRenderer, DisplayDevice
- find_atom_in_residue()
: BaseMolecule
- find_attribute()
: SymbolTable
- find_bonds_from_timestep()
: BaseMolecule
- find_extensions()
: OpenGLExtensions
- find_pbc_cells()
: DisplayDevice
- find_pbc_images()
: DisplayDevice
- find_recursion()
: ParseTree
- find_renderer()
: OpenGLExtensions
- find_unique_bonds_from_timestep()
: BaseMolecule
- findAtomBox()
: AtomGrid
- findAtomsGrid()
: MolData
- FindWithinData()
: FindWithinData
- first
: VMDDisplayList, FileSpec
- first_atom()
: SmallRing
- first_cb()
: FrameSelector
- first_char
: real_pcre
- firstvalue
: FrameSelector
- fix()
: MoleculeList, Displayable
- fixed()
: MoleculeList, Displayable
- flgatoms
: FindWithinData
- flgs
: FindWithinData
- FltkOpenGLDisplayDevice()
: FltkOpenGLDisplayDevice
- fontListBase
: OpenGLRenderer
- force
: Timestep
- force_recalc()
: DrawMolItem, DrawMolecule
- FORCEATOM
: PickModeList, Mouse
- forced_stereo_draws()
: OpenGLRenderer, DisplayDevice
- FORCEFRAG
: PickModeList, Mouse
- forceoff()
: VRPNFeedback, Tool, Feedback
- FORCERES
: PickModeList, Mouse
- forcescale
: Tool
- format
: FileRenderList, FileRenderer, CmdLabelTextFormat
- formats
: FileRenderer
- forward
: RibbonFrame
- FPS()
: FPS
- fps
: VMDApp
- fragList
: BaseMolecule
- Fragment()
: Fragment
- fragment
: BaseMolecule, Residue
- FragmentShaderObject
: OpenGLShader
- frame()
: DrawMolecule, Animation
- frame_cb()
: TextInterp, TclTextInterp, PythonTextInterp
- FrameEvent()
: FrameEvent
- FrameSelector()
: FrameSelector
- frameSkip
: CoorPluginData, CmdAnimDelete, CmdAnimWriteFile
- framespec
: CmdMolDrawFrames
- free_opengl_ctx()
: OpenGLRenderer
- FreeVRButtons()
: FreeVRButtons
- FreeVRDisplayDevice()
: FreeVRDisplayDevice
- FreeVRScene()
: FreeVRScene
- FreeVRTracker()
: FreeVRTracker
- freeze()
: VMDMenu
- fromMatrix()
: Quat
- FUNCTION
: SymbolTableElement
- g -
- g
: GRIDCELL
- gamma
: Timestep
- GelatoDisplayDevice()
: GelatoDisplayDevice
- generateChargeTexture()
: VolumeTexture
- generateColorScaleTexture()
: VolumeTexture
- generateContourLineTexture()
: VolumeTexture
- generateHSVTexture()
: VolumeTexture
- generateIndexTexture()
: VolumeTexture
- generatePosTexture()
: VolumeTexture
- GENERIC
: OpenGLExtensions
- geom_list()
: GeometryList
- geom_list_index()
: GeometryList
- geom_list_name()
: GeometryList
- geom_set_name()
: GeometryMol
- GeometryAngle()
: GeometryAngle
- GeometryAtom()
: GeometryAtom
- GeometryBond()
: GeometryBond
- GeometryDihedral()
: GeometryDihedral
- GeometryFltkMenu()
: GeometryFltkMenu
- GeometryList()
: GeometryList
- geometryList
: VMDApp
- GeometryMol()
: GeometryMol
- GeometryMonitor()
: GeometryMonitor
- GeometrySpring()
: GeometrySpring
- geomList
: GeomListStruct
- geomValue
: GeometryMol
- get()
: AtomGrid, AtomGridCell, GridList, IndexList
- get_accession()
: Molecule
- get_ambient()
: MaterialList
- get_axisorder()
: Symmetry
- get_button_names()
: UIVR
- get_buttons()
: Tool
- get_category_item()
: Scene
- get_cell()
: AtomGrid
- get_cijk()
: AtomGrid
- get_cna()
: AtomGrid
- get_cnb()
: AtomGrid
- get_cnc()
: AtomGrid
- get_colorscale_colors()
: VMDApp, Scene
- get_colorscale_minmax()
: AtomColor
- get_component_by_name()
: DrawMolecule
- get_component_name()
: DrawMolecule
- get_cue_density()
: DisplayDevice
- get_cue_end()
: DisplayDevice
- get_cue_mode()
: DisplayDevice
- get_cue_start()
: DisplayDevice
- get_custom_singleword()
: SymbolTable
- get_data()
: AtomRep
- get_database()
: Molecule
- get_device_names()
: UIVR
- get_diffuse()
: MaterialList
- get_drawframes()
: DrawMolItem
- get_eofexit()
: VMDApp
- get_eye_dir()
: DisplayDevice
- get_eye_pos()
: DisplayDevice
- get_eye_up()
: DisplayDevice
- get_feedback()
: Tool
- get_feedback_names()
: UIVR
- get_file()
: Molecule
- get_file_specs()
: Molecule
- get_force()
: PickModeForce
- get_frame()
: DrawMolecule
- get_frame_value()
: AtomSel
- get_ijk()
: AtomGrid
- get_imdmol()
: IMDMgr
- get_interp()
: TclTextInterp
- get_keep_rate()
: IMDMgr
- get_last_frame()
: DrawMolecule
- get_link_key()
: SmallRingLinkages
- get_list()
: AtomGridCell
- get_maxforce()
: Feedback
- get_na()
: AtomGrid
- get_name()
: VMDMenu
- get_nb()
: AtomGrid
- get_nc()
: AtomGrid
- get_new_frames()
: Molecule
- get_next_ts()
: IMDSimThread, IMDSimBlocking, IMDSim
- get_num_processes()
: DisplayDevice
- get_offset()
: VMDTracker
- get_opacity()
: MaterialList
- get_pbc()
: DrawMolItem
- get_pbc_images()
: DrawMolItem
- get_plugin()
: VMDApp
- get_pointgroup()
: Symmetry
- get_projection()
: DisplayDevice
- get_remarks()
: Molecule
- get_rep_molid()
: Tool
- get_rep_name()
: Tool
- get_repserialnum()
: VMDApp
- get_scale()
: VMDTracker
- get_shininess()
: MaterialList
- get_smoothing()
: DrawMolItem
- get_specular()
: MaterialList
- get_targeted_atom()
: Tool
- get_tcl_interp()
: UIText
- get_texserialnum()
: VMDApp
- get_text()
: VMDApp
- get_tracker()
: Tool
- get_tracker_names()
: UIVR
- get_trans_rate()
: IMDMgr
- get_transform_from_cell()
: Timestep
- get_transform_vectors()
: Timestep
- get_transforms()
: Timestep
- get_type()
: Molecule
- get_volume_data()
: BaseMolecule
- get_xyz()
: AtomGrid
- getActualRadius()
: MolData
- getbondorder()
: BaseMolecule
- getdevice()
: SensorConfig
- getdevices()
: Tool
- getforcescale()
: Tool
- gethost()
: IMDMgr
- getleft_rot()
: SensorConfig
- getLinkageEdge()
: SmallRingLinkages
- getmaxforce()
: SensorConfig
- getname()
: SensorConfig
- getnames()
: SensorConfig
- getNum()
: GridList
- getnums()
: SensorConfig
- getoffset()
: Tool, SensorConfig
- getplace()
: SensorConfig
- getpointers()
: DispCmdPickPointIndexArray, DispCmdWireMesh, DispCmdTriStrips, DispCmdTriMesh, DispCmdLitPointArray, DispCmdPointArray, DispCmdSphereArray
- getport()
: IMDMgr
- getRadius()
: MolData
- getright_rot()
: SensorConfig
- getscale()
: Tool, SensorConfig
- getsensors()
: SensorConfig
- getSimState()
: IMDSim
- getspringscale()
: Tool
- getTargetScale()
: Tool
- getTextFormat()
: GeometryList
- getTextOffset()
: GeometryList
- getTextSize()
: GeometryList
- getTextureID()
: VolumeTexture
- getTextureMap()
: VolumeTexture
- getTextureSize()
: VolumeTexture
- gettool()
: UIVR
- gettype()
: SensorConfig, Command
- getUSL()
: SensorConfig
- gflops
: maddthrparms
- GLenum
: OpenGLExtensions
- GLfloat
: OpenGLExtensions
- GLint
: OpenGLExtensions
- glob_trans_off()
: Displayable
- glob_trans_on()
: Displayable
- glob_translating()
: Displayable
- globt
: Displayable
- GLsizei
: OpenGLExtensions
- glxsrv
: OpenGLDisplayDevice
- gmName
: GeometryMol
- goto_frame()
: Animation
- grabs
: Tool
- GrabTool()
: GrabTool
- gradient
: VolumetricData
- graph_label_cb()
: TextInterp, TclTextInterp
- GraphicsFltkMenu()
: GraphicsFltkMenu
- GraphicsFltkRep()
: GraphicsFltkRep
- GraphicsFltkRepBeads()
: GraphicsFltkRepBeads
- GraphicsFltkRepBonds()
: GraphicsFltkRepBonds
- GraphicsFltkRepCartoon()
: GraphicsFltkRepCartoon
- GraphicsFltkRepCPK()
: GraphicsFltkRepCPK
- GraphicsFltkRepDotted()
: GraphicsFltkRepDotted
- GraphicsFltkRepDynamicBonds()
: GraphicsFltkRepDynamicBonds
- GraphicsFltkRepHBonds()
: GraphicsFltkRepHBonds
- GraphicsFltkRepIsosurface()
: GraphicsFltkRepIsosurface
- GraphicsFltkRepLicorice()
: GraphicsFltkRepLicorice
- GraphicsFltkRepLines()
: GraphicsFltkRepLines
- GraphicsFltkRepMSMS()
: GraphicsFltkRepMSMS
- GraphicsFltkRepNewCartoon()
: GraphicsFltkRepNewCartoon
- GraphicsFltkRepNewRibbons()
: GraphicsFltkRepNewRibbons
- GraphicsFltkRepPoints()
: GraphicsFltkRepPoints
- GraphicsFltkRepRibbons()
: GraphicsFltkRepRibbons
- GraphicsFltkRepSolvent()
: GraphicsFltkRepSolvent
- GraphicsFltkRepSurf()
: GraphicsFltkRepSurf
- GraphicsFltkRepTrace()
: GraphicsFltkRepTrace
- GraphicsFltkRepTube()
: GraphicsFltkRepTube
- GraphicsFltkRepVDW()
: GraphicsFltkRepVDW
- GraphicsFltkRepVolumeSlice()
: GraphicsFltkRepVolumeSlice
- GraphicsFltkRepVolumetric()
: GraphicsFltkRepVolumetric
- GraphLabelEvent()
: GraphLabelEvent
- grideners
: enthrparms
- GridList()
: GridList
- gridsize
: VolMap
- gridspacing
: MolData, enthrparms
- growthrate
: intstack
- gsub()
: JString
- guess()
: Symmetry
- guess_filetype()
: VMDApp
- h -