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CUDAQuickSurf Class Reference

#include <CUDAQuickSurf.h>

List of all members.

Public Methods

CUDAQuickSurf (void)

int free_bufs (void)

int check_bufs (long int natoms, int colorperatom, int gx, int gy, int gz)

int alloc_bufs (long int natoms, int colorperatom, int gx, int gy, int gz)

int get_chunk_bufs (int testexisting, long int natoms, int colorperatom, int gx, int gy, int gz, int &cx, int &cy, int &cz, int &sx, int &sy, int &sz)

int calc_surf (long int natoms, const float *xyzr, const float *colors, int colorperatom, float *origin, int *numvoxels, float maxrad, float radscale, float gridspacing, float isovalue, float gausslim, VMDDisplayList *cmdList)

~CUDAQuickSurf (void)

Constructor & Destructor Documentation

CUDAQuickSurf::CUDAQuickSurf ( void )

Definition at line 1106 of file CUDAQuickSurf.cu.

CUDAQuickSurf::~CUDAQuickSurf ( void )

Definition at line 1112 of file CUDAQuickSurf.cu.
References free_bufs, and qsurf_gpuhandle::mc.

Member Function Documentation

int CUDAQuickSurf::alloc_bufs ( long int natoms,

int colorperatom,

int gx,

int gy,

int gz

)

Definition at line 1209 of file CUDAQuickSurf.cu.
References qsurf_gpuhandle::atomHash_d, qsurf_gpuhandle::atomIndex_d, qsurf_gpuhandle::c3f_d, qsurf_gpuhandle::cellStartEnd_d, check_bufs, qsurf_gpuhandle::color_d, qsurf_gpuhandle::colorperatom, qsurf_gpuhandle::devdensity, qsurf_gpuhandle::devvoltexmap, free_bufs, qsurf_gpuhandle::gx, qsurf_gpuhandle::gy, qsurf_gpuhandle::gz, CUDAMarchingCubes::MemUsageMC, qsurf_gpuhandle::n3f_d, qsurf_gpuhandle::natoms, qsurf_gpuhandle::safety, qsurf_gpuhandle::sorted_color_d, qsurf_gpuhandle::sorted_xyzr_d, qsurf_gpuhandle::v3f_d, and qsurf_gpuhandle::xyzr_d.
Referenced by get_chunk_bufs.

int CUDAQuickSurf::calc_surf ( long int natoms,

const float * xyzr,

const float * colors,

int colorperatom,

float * origin,

int * numvoxels,

float maxrad,

float radscale,

float gridspacing,

float isovalue,

float gausslim,

VMDDisplayList * cmdList

)

Definition at line 1356 of file CUDAQuickSurf.cu.
References qsurf_gpuhandle::atomHash_d, qsurf_gpuhandle::atomIndex_d, qsurf_gpuhandle::c3f_d, qsurf_gpuhandle::cellStartEnd_d, qsurf_gpuhandle::color_d, CUDAMarchingCubes::computeIsosurface, qsurf_gpuhandle::devdensity, qsurf_gpuhandle::devvoltexmap, free_bufs, GBLOCKSZX, GBLOCKSZY, GBLOCKSZZ, get_chunk_bufs, CUDAMarchingCubes::GetMaxGridSize, CUDAMarchingCubes::GetVertexCount, GTEXBLOCKSZZ, GTEXUNROLL, GUNROLL, CUDAMarchingCubes::Initialize, qsurf_gpuhandle::mc, qsurf_gpuhandle::n3f_d, qsurf_gpuhandle::natoms, NULL, qsurf_gpuhandle::safety, CUDAMarchingCubes::SetIsovalue, CUDAMarchingCubes::SetSubVolume, CUDAMarchingCubes::SetVolumeData, qsurf_gpuhandle::sorted_color_d, qsurf_gpuhandle::sorted_xyzr_d, qsurf_gpuhandle::v3f_d, vmd_cuda_build_density_atom_grid, wkf_timer_create, wkf_timer_destroy, wkf_timer_start, wkf_timer_stop, wkf_timer_time, wkf_timer_timenow, wkf_timerhandle, and qsurf_gpuhandle::xyzr_d.
Referenced by QuickSurf::calc_surf.

int CUDAQuickSurf::check_bufs ( long int natoms,

int colorperatom,

int gx,

int gy,

int gz

)

Definition at line 1191 of file CUDAQuickSurf.cu.
References qsurf_gpuhandle::colorperatom, qsurf_gpuhandle::gx, qsurf_gpuhandle::gy, qsurf_gpuhandle::gz, and qsurf_gpuhandle::natoms.
Referenced by alloc_bufs, and get_chunk_bufs.

int CUDAQuickSurf::get_chunk_bufs ( int testexisting,

long int natoms,

int colorperatom,

int gx,

int gy,

int gz,

int & cx,

int & cy,

int & cz,

int & sx,

int & sy,

int & sz

)

Definition at line 1272 of file CUDAQuickSurf.cu.
References alloc_bufs, check_bufs, GBLOCKSZX, GBLOCKSZY, GBLOCKSZZ, GTEXBLOCKSZZ, GTEXUNROLL, and GUNROLL.
Referenced by calc_surf.

The documentation for this class was generated from the following files:

Generated on Sat May 26 01:49:09 2012 for VMD (current) by

Public Methods
	CUDAQuickSurf (void)
int	free_bufs (void)
int	check_bufs (long int natoms, int colorperatom, int gx, int gy, int gz)
int	alloc_bufs (long int natoms, int colorperatom, int gx, int gy, int gz)
int	get_chunk_bufs (int testexisting, long int natoms, int colorperatom, int gx, int gy, int gz, int &cx, int &cy, int &cz, int &sx, int &sy, int &sz)
int	calc_surf (long int natoms, const float xyzr, const float colors, int colorperatom, float origin, int numvoxels, float maxrad, float radscale, float gridspacing, float isovalue, float gausslim, VMDDisplayList *cmdList)
	~CUDAQuickSurf (void)