#include "ResizeArray.h"
Go to the source code of this file.
Compounds  
struct  axis 
struct  bond 
struct  bondlist 
struct  elementsummary 
struct  plane 
class  Symmetry 
Defines  
#define  SKIP_IDENTICAL 1 
#define  NOSKIP_IDENTICAL 0 
#define  PRINCIPAL_AXIS 1 
#define  PERPENDICULAR_AXIS 2 
#define  MAXORDERCN 8 
Typedefs  
typedef plane  Plane 
typedef axis  Axis 
typedef elementsummary  ElementSummary 
typedef bond  Bond 
typedef bondlist  Bondlist 
Functions  
int  measure_trans_overlap (AtomSel *sel, MoleculeList *mlist, const Matrix4 *trans, float sigma, bool skipident, int maxnatoms, float &overlap) 
Calculate the structural overlap of a selection with a copy of itself that is transformed according to a given transformation matrix. Returns the normalized sum over all gaussian function values of the pair distances between atoms in the original and the transformed selection. More...  
int  measure_pointset_overlap (const float *posA, int natomsA, int *flagsA, const float *posB, int natomsB, int *flagsB, float sigma, float pairdist, float &similarity) 

Definition at line 50 of file MeasureSymmetry.h. Referenced by Symmetry::Symmetry. 

Definition at line 43 of file MeasureSymmetry.h. Referenced by Symmetry::score_axis, Symmetry::score_inversion, Symmetry::score_plane, Symmetry::score_rotary_reflection, and vmd_measure_trans_overlap. 

Definition at line 47 of file MeasureSymmetry.h. Referenced by vmd_measure_symmetry. 

Definition at line 46 of file MeasureSymmetry.h. Referenced by vmd_measure_symmetry. 

Definition at line 42 of file MeasureSymmetry.h. 











Definition at line 4417 of file MeasureSymmetry.C. 

Calculate the structural overlap of a selection with a copy of itself that is transformed according to a given transformation matrix. Returns the normalized sum over all gaussian function values of the pair distances between atoms in the original and the transformed selection.
Definition at line 4395 of file MeasureSymmetry.C. Referenced by vmd_measure_trans_overlap. 