Computational Biophysics Workshop
Lectures
- 6/7: Introduction to Protein Structure
and Dynamics
- Opening Remarks (pdf)
- Molecular
Graphics Perspective of Protein Structure and Function (pdf)
- Molecular Dynamics Methods (Part 1) (pdf)
- Molecular Dynamics Methods (Part 2) (pdf)
- 6/8: Introduction to
Bioinformatics
- Sequence and Structure Alignment Algorithms (pdf)
- Evolution
of Protein Structure (pdf)
- Bioinformatics of tRNA synthetase (pdf)
- 6/9: Statistical Mechanics
of Proteins
- Equilibrium Properties of Proteins, Part1 , Part2(pdf)
- Non-equilibrium Properties of Proteins (pdf)
- Simulated Cooling of Proteins, Part1, Part2 (pdf)
- 6/10: Steered Molecular
Dynamics of Proteins
- Introduction and Examples (pdf)
- Mechanical Proteins (pdf)
- Determining
Potentials (pdf)
- 6/11: Modeling Large
Systems
- Molecular Mechanics of Living Cells (pdf)
- Light Harvesting in Photosynthesis (pdf)
- ATP Synthasese (pdf)
- 6/14: Introduction to
Protein Structure and
Protein
Bioinformatics
- Molecular Graphics Perspective of Protein Strutcure and Function, Part1, Part2 (pdf)
- Introduction to Bioinformatics, Part1, Part2 (pdf)
- Evolutionary Analysis of aquaporins (pdf)
- 6/15: Introduction to
Protein Dynamics
- Equilibrium Properties of Proteins, Part1, Part2 (pdf)
- Non-equilibrium Properties of Proteins (pdf)
- Simulated Cooling of Proteins, Part1 , Part2 (pdf)
- 6/16: Parameters of
Classical Force
Fields
- Introduction and Examples (pdf)
- Introduction
to Classical Force Fields (pdf)
- Methods of Parametrization
(pdf)
- 6/17: Simulating
Membrane Channels
- Introduction and Examples (pdf)
- Transport
in Aquaporins (pdf)
- Nanotubes (pdf)
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