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Computational Biophysics Workshop - Talca, Nov. 14-16, 2006

Lectures

• 11/14: Introduction to Biomolecular Modeling with VMD and NAMD
  
  
  • Opening Remarks (pdf) 
  • Introduction to VMD (pdf)
  • Introduction to NAMD (pdf)
     
• 11/15: All-atom Modeling of Membrane Proteins
   
  • Modeling Membrane Proteins in their Native Environment (pdf)
  • Analyzing Membrane Channel Simulations (pdf)
     
• 11/16: Advanced Topics: Custom Forces and Bionanotechnology
  
  
  • Custom Forces in NAMD (pdf)
  • Toward Sequencing DNA with a Synthetic Nanopore (pdf)