NIH Resource for Macromolecular Modeling & Visualization University of Illinois at Urbana-Champaign

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Computational Biophysics Workshop - Talca, Nov. 14-16, 2006

Tutorials

Below is a list of the tutorials used at the workshop.

• VMD Molecular Graphics Tutorial
  An introduction to VMD and its capabilities.
  
  
• NAMD Molecular Dynamics/Steered Molecular Dynamics Tutorial
  An introduction to NAMD and its capabilities.
  
  
• Membrane Channels Set-up Tutorial
  A guide to preparing a MD simulation of a membrane protein in a lipid bilayer membrane (advanced).
  
  
• Membrane Channels Analysis Tutorial
  A guide to analyzing membrane channel simulations (advanced).
  
  
• Images and Movies Tutorial
  A guide to advanced features of VMD for making publication quality images and movies (advanced).
  
  
• Custom Forces Tutorial
  A guide to applying custom forces in NAMD via tclForces and tclBC scripts (advanced).
  
  
• Biomolecular/Synthetic Systems Tutorial
  A guide to MD simulations of biomolecular/inorganic systems (advanced).