Computational Biophysics Workshop
Program
All lectures were provided by Dr. Alek Aksimentiev.
Tue, 11/14: Introduction to Biomolecular Modeling with VMD and NAMD
| 11:00-13:00 | Introduction to VMD and NAMD |
| Lunch Break | |
| 14:00-18:00 | VMD Molecular Graphics Tutorial Lab + Challenge |
| 18:00-21:00 | NAMD Molecular Dynamics/Steered Molecular Dynamics Tutorial Lab + Challenge |
Wed, 11/15: All-atom Modeling of Membrane Proteins
| 09:00-10:00 | Simulation of Membrane Proteins |
| 10:00-13:00 | Membrane Channels Setup Tutorial Lab + Challenge |
| Lunch Break | |
| 14:00-15:00 | Analysis of Membrane Channel Simulations |
| 15:00-18:00 | Membrane Channels Analysis Tutorial Lab + Challenge |
| 18:00-20:00 | Images and Movies Tutorial Lab + Challenge |
Thu, 11/16: Advanced Topics: Custom Forces and Bionanotechnology
| 09:00-10:00 | Introduction to Tcl Forces and SMD |
| 10:00-13:00 | Custom Forces Tutorial Lab + Challenge |
| Lunch Break | |
| 14:00-15:00 | Simulations of Biomolecular/Inorganic Systems |
| 15:00-18:00 | Biomolecular/Synthetic Systems Tutorial Lab + Challenge |
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