Computational Biophysics Workshop - Talca, Nov. 14-16, 2006
TCB Hands-on Workshop at Talca, Chile
Program
All lectures were provided by Dr. Alek Aksimentiev.
Tue, 11/14: Introduction to Biomolecular Modeling with VMD and NAMD
| 11:00-13:00 |
Introduction to VMD and NAMD |
| Lunch Break |
|
| 14:00-18:00 |
VMD Molecular Graphics Tutorial Lab + Challenge |
| 18:00-21:00 |
NAMD Molecular Dynamics/Steered Molecular Dynamics Tutorial Lab + Challenge |
Wed, 11/15: All-atom Modeling of Membrane Proteins
| 09:00-10:00 |
Simulation of Membrane Proteins |
| 10:00-13:00 |
Membrane Channels Setup Tutorial Lab + Challenge |
| Lunch Break |
|
| 14:00-15:00 |
Analysis of Membrane Channel Simulations |
| 15:00-18:00 |
Membrane Channels Analysis Tutorial Lab + Challenge |
| 18:00-20:00 |
Images and Movies Tutorial Lab + Challenge |
Thu, 11/16: Advanced Topics: Custom Forces and
Bionanotechnology
| 09:00-10:00 |
Introduction to Tcl Forces and SMD |
| 10:00-13:00 |
Custom Forces Tutorial Lab + Challenge |
| Lunch Break |
|
| 14:00-15:00 |
Simulations of Biomolecular/Inorganic Systems |
| 15:00-18:00 |
Biomolecular/Synthetic Systems Tutorial Lab +
Challenge |
