• Program

• Instructors

• Lectures

• Tutorials

• Participants

• Photo Gallery

• Evaluation

• Announcement

• Laptop Reqs

• Laptop Setup

• FAQ

• Home

Computational Biophysics Workshop - Bremen, Oct. 17-21, 2011

• Mon, 10/17: Introduction to Protein Structure and Dynamics - Klaus Schulten
  • Opening Remarks (pdf)
  • Structure and Sequence Analysis with VMD (pdf)
    
  • Introduction to Molecular Dynamics with NAMD (pdf)
    
  
  
• Tue, 10/18: Statistical Mechanics of Proteins - Klaus Schulten
• Analysis of Equilibrium and Non-equilibrium Properties of Proteins with NAMD (pdf) 
• Exemplary Applications of VMD / NAMD in Modern Research (pdf)
  
  
• Wed, 10/19: Introduction to Bioinformatics and Forcefields - Klaus Schulten, Emad Tajkhorshid
  • Introduction to Structure and Sequence Alignment (K. Schulten) (pdf1, pdf2) 
  • Introduction to Topology, Parameters, and Structure Files, Part I (E. Tajkhorshid) (pdf)
  
  
• Thu, 10/20: Parameters for Classical Force Fields - Emad Tajkhorshid
  
  • Introduction to Topology, Parameters, and Structure Files (pdf)
  • Examples and Applications (pdf)
    
  
  
• Fri, 10/21: Simulating Membrane Channels - Emad Tajkhorshid
  
  • Introduction and Examples (pdf)
  • Transport in Aquaporins; Nanotubes (pdf)