Computational Biophysics Workshop - Atlanta, Mar. 21-25, 2011
Lectures
- 3/21: Introduction to Protein Structure
and Dynamics - Klaus Schulten, Jeff Skolnick
- Opening Remarks, Steve Harvey (pdf), Klaus Schulten (pdf)
- Introduction to Molecular Dynamics with VMD & NAMD, Klaus Schulten (pdf-1, pdf-2)
- From Molecules to Cells - Whole Cell Simulations, Jeff Skolnick, CSSB (pdf)
- 3/22: Statistical Mechanics of Proteins - Klaus Schulten
- Analysis of Equilibrium and Non-equilibrium Properties of Proteins with NAMD (pdf)
- Exemplary Applications of VMD / NAMD in Modern Research (pdf)
-
3/23: Introduction to Bioinformatics - Zaida Luthey-Schulten
- Introduction to Evolutionary Concepts in Bioinformatics: MultiSeq in VMD (pdf-1, pdf-2)
- Application of MultiSeq to Evolution of Translation Machinery (pdf)
- 3/24: Parameters for Classical Force Fields
- 3/25: Simulating Membrane Channels