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Computational Biophysics Workshop - Atlanta, Mar. 21-25, 2011

• 3/21: Introduction to Protein Structure and Dynamics - Klaus Schulten, Jeff Skolnick
  • Opening Remarks, Steve Harvey (pdf), Klaus Schulten (pdf)
  • Introduction to Molecular Dynamics with VMD & NAMD, Klaus Schulten (pdf-1, pdf-2)
    
  • From Molecules to Cells - Whole Cell Simulations, Jeff Skolnick, CSSB (pdf)
    
  
  
• 3/22: Statistical Mechanics of Proteins - Klaus Schulten
• Analysis of Equilibrium and Non-equilibrium Properties of Proteins with NAMD (pdf) 
• Exemplary Applications of VMD / NAMD in Modern Research (pdf)
  


• 3/23: Introduction to Bioinformatics - Zaida Luthey-Schulten
  • Introduction to Evolutionary Concepts in Bioinformatics: MultiSeq in VMD (pdf-1, pdf-2) 
  • Application of MultiSeq to Evolution of Translation Machinery (pdf)
  
  
• 3/24: Parameters for Classical Force Fields
  
  • Introduction to Topology, Parameters, and Structure Files (pdf)
  • Examples and Applications (pdf)
    
  
  
• 3/25: Simulating Membrane Channels
  
  • Introduction and Examples (pdf)
  • Transport in Aquaporins; Nanotubes (pdf)