• Program

• Instructors

• Lectures

• Tutorials

• Participants

• Photo Gallery

• Evaluation

• Announcement

• Laptop Reqs

• Laptop Setup

• Visa/Waiver Reqs

• FAQ

• Home

Computational Biophysics Workshop - Urbana, Nov. 1-5, 2010

• Mon, 11/1: Introduction to Protein Structure and Dynamics, K. Schulten 
  • Opening Remarks (pdf)
  • Structure and Sequence Analysis with VMD (pdf)
  • Introduction to Molecular Dynamics with NAMD (pdf)
  
  
• Tue, 11/2: Statistical Mechanics of Proteins, K. Schulten and C. Chipot 
  • Analysis of Equilibrium and Non-equilibrium Properties of Proteins with NAMD - K. Schulten (pdf, pdf)
  • Good Practices in Free Energy Calculations - C. Chipot (pdf)
  
  
• Wed, 11/3: Introduction to Bioinformatics, Z. Luthey-Schulten
  •  Introduction to Evolutionary Concepts in Bioinformatics: MultiSeq in VMD
  • Application of MultiSeq to Evolution of Translation Machinery
  
  
• Thu, 11/4: Parameters for Classical Force Fields, E. Tajkhorshid
  • Introduction to Topology, Parameters, and Structure Files (pdf)
  • Examples and Applications (pdf)
  
  
• Fri, 11/5: Simulating Membrane Channels, E. Tajkhorshid
  • Introduction and Examples (pdf)
  • Nanotubes (pdf)