Computational Biophysics Workshop - Urbana, Oct. 22-26, 2012
Tutorials
Below is a list of the tutorials available at the workshop. Please click here to see a page with the updated versions of these tutorials.
- VMD Molecular Graphics Tutorial
- NAMD Molecular Dynamics/Steered Molecular Dynamics Tutorial
- Aquaporins with the VMD MultiSeq Tool
- Evolution of Protein: Aspartyl-tRNA Synthetase
- Evolution of Translation Class I Aminoacyl-tRNA Synthetases: tRNA complexex
- Evolution of Translation EF-Tu: tRNA
- Evolution of Translation: The Ribosome
- Dynamical Network Analysis
- Topology File Tutorial
- Simuation of Water Permeation Through Nanotubes Tutorial
- Stretching Deca-Alanine Tutorial
- Parameterization of a Novel Residue
- Membrane Proteins
- GPU Accelerated Molecular Dynamics and Visualization Tutorial
- Shape-Based Coarse Graining
- User-Defined Forces in NAMD
- A Tutorial to Set Up Alchemical Free Energy Perturbation Calculations in NAMD
- A Tutorial to Set Up Adaptive Biasing Force Calculations in NAMD
