Below is a list of the tutorials available at the workshop. Please click here to see a page with the updated versions of these tutorials.

  • VMD Molecular Graphics Tutorial
  • NAMD Molecular Dynamics/Steered Molecular Dynamics Tutorial
  • Aquaporins with the VMD MultiSeq Tool
  • Evolution of Protein: Aspartyl-tRNA Synthetase
  • Evolution of Translation Class I Aminoacyl-tRNA Synthetases: tRNA complexex
  • Evolution of Translation EF-Tu: tRNA
  • Evolution of Translation: The Ribosome
  • Dynamical Network Analysis
  • Topology File Tutorial
  • Simuation of Water Permeation Through Nanotubes Tutorial
  • Stretching Deca-Alanine Tutorial
  • Parameterization of a Novel Residue
  • Membrane Proteins
  • GPU Accelerated Molecular Dynamics and Visualization Tutorial
  • Shape-Based Coarse Graining
  • User-Defined Forces in NAMD
  • A Tutorial to Set Up Alchemical Free Energy Perturbation Calculations in NAMD
  • A Tutorial to Set Up Adaptive Biasing Force Calculations in NAMD