Cryo-EM Modeling Based on X-ray Crystallography Workshop, Urbana, Jan. 8-10, 2014
Program
- Lectures: Room 3269 of the Beckman Institute
- Tutorials: Room 3269 and TCBG Innovation Areas I & II at Beckman
Wed, Jan 8: Principles and Applications of Molecular Dynamics Flexible Fitting - Klaus Schulten and TCBG Members
08:30-09:00 | Registration and Continental Breakfast |
09:00-09:05 | Opening Remarks |
09:05-09:45 | The Computational Microscope with VMD and NAMD |
09:45-10:15 | Principles of MDFF - Ryan McGreevy (pdf) |
10:15-10:45 | Applications of MDFF - Yan Chan and Juan Perilla (pdf, pdf) |
Coffee Break and Group Photo | |
11:00-12:00 | Demonstrations of MDFF* - Yan Chan, Boon Chong Goh, Yanxin Liu, Juan Perilla, Abhi Singaroy |
12:00-12:20 | Q & A |
Lunch Break | |
14:00-16:00 | VMD Tutorial - Using VMD; NAMD Tutorial (possibly also MDFF, Structure Check tutorials) |
Coffee Break | |
16:15-18:00 | VMD Tutorial - Using VMD; NAMD Tutorial (possibly also MDFF, Structure Check tutorials) |
Dinner |
* Note: demonstrations will be shown in TCBG Innovation Courtyard II, across from Room 3055
Thu, Jan 9: Structural Modeling Using DireX and DEN - Gunnar Schroeder
08:30-09:00 | Continental Breakfast |
09:00-10:30 | Fitting Cryo-EM Density Maps with Crystal Structures Using DireX (pdf) |
Coffee Break | |
10:50-12:00 | Deformable Elastic Network (DEN) (pdf) |
12:00-12:30 | Q & A |
Lunch Break | |
14:00-16:00 | DireX Tutorial (pdf); MDFF Tutorial; Structure Check Tutorial |
Coffee Break | |
16:15-18:00 | DireX Tutorial (pdf); MDFF Tutorial; Structure Check Tutorial |
Fri, Jan 10: Participant Projects, Tutorials, and Lab Time
08:30-09:00 | Continental Breakfast |
09:00-10:30 | Participant Projects, Tutorials, and Lab Time |
Coffee Break | |
10:50-12:00 | Participant Projects, Tutorials, and Lab Time |
Lunch Break | |
14:00-16:30 | Participant Projects, Tutorials, and Lab Time |
Coffee Break | |
16:45-18:00 | Participant Projects, Tutorials, and Lab Time |
Click here to see descriptions of tutorials listed in program.
Note: program subject to change. Workshop supported by NIH 9P41GM104601 "Center for Macromolecular Modeling and Bioinformatics".