Computational Biophysics Workshop - Urbana, September 24-26, 2018

Program

(subject to changes)

Location: Beckman Institute, Room 5602

Monday, September 24

09:00-09:30          Welcome and Brief Overview
09:30-10:20          Introduction to Cadnano, Shawn Douglas
10:20-10:30          Q&A
10:30-10:50          Coffee Break
11:00-11:50          The Physics of DNA: an introduction to modeling, Aleksei Aksimentiev
11:50-12:00          Q&A
12:00-12:50          Lunch Break
13:00-15:15          Hands-on tutorial
15:15-15:45          Coffee Break
15:45-18:00          Hands-on tutorial
18:00-                   Dinner

Tuesday, September 25

09:30-10:20          Introduction to Cadnano Toolkit, Tural Aksel
10:20-10:30          Q&A
10:30-10:50          Coffee Break
11:00-11:50          Multi-resolution Simulations of DNA nanostructures, Chris Maffeo
11:50-12:00          Q&A
12:00-12:50          Lunch Break
13:00-15:15          Hands-on tutorial
15:15-15:45          Coffee Break
15:45-18:00          Hands-on tutorial

Wednesday, September 26

09:00-09:30          Visualization and analysis with VMD, Chris Maffeo and David Winogradoff
09:25-09:30          Q&A
09:30-09:55          Integration with other software, Chris Maffeo and Himanshu Joshi
09:55-10:00          Q&A
10:00-10:20          Coffee Break
10:30-11:50          Hands-on tutorial
12:00-12:50          Lunch Break
13:00-15:15          Hands-on tutorial
15:15-15:45          Coffee Break
15:45-18:00          Hands-on tutorial