Computational Biophysics Workshop - Urbana, September 24-26, 2018
Program
(subject to changes)Location: Beckman Institute, Room 5602
Monday, September 24
09:00-09:30 Welcome and Brief Overview09:30-10:20 Introduction to Cadnano, Shawn Douglas
10:20-10:30 Q&A
10:30-10:50 Coffee Break
11:00-11:50 The Physics of DNA: an introduction to modeling, Aleksei Aksimentiev
11:50-12:00 Q&A
12:00-12:50 Lunch Break
13:00-15:15 Hands-on tutorial
15:15-15:45 Coffee Break
15:45-18:00 Hands-on tutorial
18:00- Dinner
Tuesday, September 25
09:30-10:20 Introduction to Cadnano Toolkit, Tural Aksel10:20-10:30 Q&A
10:30-10:50 Coffee Break
11:00-11:50 Multi-resolution Simulations of DNA nanostructures, Chris Maffeo
11:50-12:00 Q&A
12:00-12:50 Lunch Break
13:00-15:15 Hands-on tutorial
15:15-15:45 Coffee Break
15:45-18:00 Hands-on tutorial
Wednesday, September 26
09:00-09:30 Visualization and analysis with VMD, Chris Maffeo and David Winogradoff09:25-09:30 Q&A
09:30-09:55 Integration with other software, Chris Maffeo and Himanshu Joshi
09:55-10:00 Q&A
10:00-10:20 Coffee Break
10:30-11:50 Hands-on tutorial
12:00-12:50 Lunch Break
13:00-15:15 Hands-on tutorial
15:15-15:45 Coffee Break
15:45-18:00 Hands-on tutorial