Computational Biophysics Workshop - Lake Tahoe, May 23-27, 2005
TCB Hands-on Workshop in Lake Tahoe
Tutorials
Below is a list of the tutorials used at the workshop.
Please
click here to see a page with the updated versions of these tutorials.
- Molecular Graphics Tutorial
An introduction to VMD and its capabilities.
- Molecular Dynamics/Steered Molecular Dynamics Tutorial
An introduction to NAMD and its capabilities.
- Evolution of Protein: Aspartyl-tRNA
Synthetase
A tutorial that uses structural and sequence alignment to learn about
the evolution of tRNA synthetases.
- Sequence Alignment Algorithms
Introduces participants to bioinformatics, the statistical
analysis of protein sequences and structures.
- Aquaporins Tutorial
A tutorial that uses Bioinformatics tools within VMD to find important
structural features in aquaporins from evolutionary studies.
- Topology File Tutorial
An introduction on how to generate parameter information for a molecule based on topology information from other molecules.
- Parameterization of a Novel Residue
Tutorial on determining new force field parameters to describe novel
system components of a new molecule.
- Nanotubes Tutorial
A tutorial simulating water diffusion and permeation through nanotubes.
- Stretching Deca-Alanine Tutorial
An introduction to IMD and SMD simulations with VMD and NAMD.
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