From: Sujata Sovani (
Date: Wed Jul 29 2009 - 12:10:09 CDT

Hi All,

I am new to NAMD.

I am following the tutorial using my molecule. I have solvated the protein and moving onto minimization and equilibration.

In the configuration file
in the Simulation parameters, the FF parameters to be excluded in the 'ub_ws_eq.conf file' are:

exclude scaled1-4

Are scaled 1-4 always to be excluded? If yes why? what are the other options?

Thank you.


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