Research Topics - All Ongoing Projects
The scope of the research efforts of the Theoretical and Computational Biophysics Group includes a variety of fields of inquiry - quantum biology, nanoengineering, bioenergetic proteins, membrane biophysics, steered/interactive molecular dynamics, and other topics - across many levels of organization, from the molecular to the cellular level, with an emphasis on modeling large macromolecular systems in realistic environments. Under this category are descriptions of the ongoing research efforts by group members.
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Muscle fibers are not rigid structures, but rather, they can both contract and extend in response to physiological demand. As a result, muscle sarcomeres must have a protective mechanism to prevent tearing and damage from overstretching. The giant protein titin fulfills this role by acting as a molecular rubber band, providing a passive resistance force during extension to restore the muscle fiber to its resting length. Conceivably, this rubber band must be anchored to a rigid structure in order to function. Biochemical investigations have speculated that the protein telethonin, located at the sarcomeric Z-disc, may serve this purpose. Genetic diseases related to defects in telethonin have been correlated with dilated cardiomyopathy and a form of muscular dystrophy. To date there have been no studies to determine how strongly bound titin is to telethonin. To explore this issue, we performed molecular dynamics simulations in order to test the strength of the newly resolved titin Z1Z2-telethonin complex. Our results, which have recently been reported (paper), reveal that the force required to dissociate titin from telethonin is significantly higher than that required to unfold isolated titin Ig-domains. This suggests strongly that telethonin is in fact an essential component of the Z-disc titin anchor. In addition, we find that telethonin anchors not just one, but two separate titin molecules, serving as a sort of molecular glue joining both titin molecules together through β-strand crosslinking (a structural motif also seen in fibril pathologies such as Alzheimer's, Parkinson, and Huntington's disease). Thus our simulations reveal also a fundamental architectural element of living cells, namely how cells glues their components together yielding strong mechanical connections. For more information on teletonin and the implications of our findings, see the following webpage here.
Papers
Research Projects
- Structure, Dynamics, and Function of Aquaporins
- HDL and Nanodiscs
- Multiscale Modeling of Gene Repression
- Mechanical Strength of the Titin/Telethonin Complex
- Molecular Basis of Hearing
- Fibronectin and Integrin
- Empirical Nanotube Model for Biological Applications
- Organization of Energy Transfer Networks in Photosynthesis
- ATP Hydrolysis in F1-ATPase
- Biological Photoreceptors
- Conformational Change of Holliday Junction
- The Nuclear Pore Complex
- Gas Transport Inside Hydrogenase Cpl
