Tutorial-l Mailing List

From: santhu kumar (mesanthu_at_gmail.com)
Date: Thu Jan 12 2006 - 04:53:05 CST

hello..
i am new to namd. i have taken up molecular dynamics and simualtion as my
final year project. I want to know the complexity that NAMD can handle.
i want to simmulate a dna- protein interaction with water as enviornment. My
computaional facilities are a 8-node Beuwolf cluster.

is this feasible using NAMD?

i have tried a molecular dynamic simmualtion before but it was using
GROMACS.
can you please suggest me the requirements and sources i can refer for this
project.

Thanking you
Vijay Santhosh Kumar
IV year Btech Bioinformatics
VIT , vellore.

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