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image size:
6.9MB
Made with VND
Modern neuroscience is undergoing a profound evolution due to systematic
efforts that provide large, comprehensive datasets on properties of
brain cells, their connectivity, and activity. Converting these widening
streams of complex data into new knowledge via analysis and modeling is
a major challenge for the field.
This rendering of a model of the mouse primary visual cortex (V1) with a
Neuropixels probe was awarded 2nd Prize in the 2021 NIH BRAIN Initiative
"Show
Us Your BRAINs!" Photo and Video Contest. The image was created with new
software created at the Center: Visual Neuronal Dynamics
— VND
— based on the Center's powerful VMD software, and
produced in collaboration with the Allen Institute.
The VND software performs visualization of bio-realisitc 3D
neuronal network models and aims to provide efficient
workflows for large and complex systems of thousands of neurons and
beyond. VND integrates the SONATA format, which
is used
by the Brain Modeling
Toolkit (BMTK), with the existing powerful visualization
capabilities of VMD to provide a platform for user-friendly, flexible,
and highly efficient visualization of bio-realistic neuronal network
models and simulations.
The initial version of VND reads SONATA file data, displays a new
neuroscience-specific interactive GUI, and creates neuronal network
visualizations for both exploratory visualization and for generating
publication-quality figures for research manuscripts.
(This image and VND were highighted in an August 2021 blog
post by NIH Director Francis Collins.)