David J. Hardy

Contact Information:

Home Department: Computer Science
Research Group: Bionumerics Research Group
Telephone: (217) 244-5493
E-mail: dhardy@ks.uiuc.edu

Education:

Ph.D., Computer Science, University of Illinois at Urbana-Champaign, 2006

M.S., Computer Science, University of Missouri-Rolla, 1997

B.S., Mathematics and Computer Science, Truman State University, 1994

Research Interests:

Numerical methods for molecular dynamics

Software development for molecular dynamics

David Hardy

Publications:

C. I. Rodrigues, D. J. Hardy, J. E. Stone, K. Schulten, W. W. Hwu, "GPU acceleration of cutoff pair potentials for molecular modeling applications," Proceedings of the 2008 Conference on Computing Frontiers, 2008, in press. (abstract)

J. E. Stone, J. C. Phillips, P. L. Freddolino, D. J. Hardy, L. G. Trabuco, and K. Schulten, "Accelerating molecular modeling applications with graphics processors," Journal of Computational Chemistry, 28:2618-2640, 2007. (abstract)

R. D. Skeel, D. J. Hardy, and J. C. Phillips, "Correcting mesh-based force calculations to conserve both energy and momentum in molecular dynamics simulations," Journal of Computational Physics, 225(1):1-5, 2007. (PDF)

D. J. Hardy, Multilevel Summation for the Fast Evaluation of Forces for the Simulation of Biomolecules, Ph.D. thesis, Univ. of Illinois at Urbana-Champaign, 2006.

R. D. Skeel, I. Tezcan, and D. J. Hardy, "Multiple grid methods for classical molecular dynamics," Journal of Computational Chemistry, 23:673-684, 2002. (PDF)

R. D. Skeel and D. J. Hardy, "Practical construction of modified Hamiltonians," SIAM Journal on Scientific Computing, 23(4):1172-1188, 2001. (PDF)

D. J. Hardy, D. I. Okunbor, and R. D. Skeel, "Symplectic variable stepsize integration for N-body problems," Applied Numerical Mathematics, 29:19-30, 1999. (PDF)

M. Erickson, S. Fernando, W. H. Haemers, D. Hardy, and J. Hemmeter, "Deza graphs: a generalization of strongly regular graphs," Journal of Combinatorial Designs, 7:395-405, 1999.

D. J. Hardy and D. I. Okunbor, "Qualitative study of the symplectic Stoermer-Verlet integrator," Journal of Chemical Physics, 102(22):8978-8982, 1995.

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