Computational Biophysics Workshop - Frankfurt, Mar. 20-23, 2006
Program
The schedule below is subject to change.
Mon, 3/20: Introduction to Protein
Structure and
Dynamics, K. Schulten
| 09:00-09:30 | Opening Remarks |
| 09:30-10:40 | Molecular Graphics Perspective of Protein Structure and Function |
| Coffee Break | |
| 11:00-11:50 | Molecular Dynamics Method |
| 11:50-12:00 | Daily Q & A |
| Lunch Break | |
| 14:00-14:45 | Overview of Hands-on Sessions |
| 15:00-15:30 | Molecular Graphics Tutorial |
| Coffee Break | |
| 15:45-18:00 | Molecular Graphics Tutorial (continued) |
Tue, 3/21: Statistical Mechanics of Proteins, K. Schulten
| 09:00-10:00 | Molecular Dynamics with NAMD |
| 10:00-10:40 | Equilibrium Properties of Proteins |
| Coffee Break | |
| 11:00-11:50 | Nonequilibrium Properties of Proteins |
| 11:50-12:00 |
Daily Q & A Group photo |
| Lunch Break | |
| 14:00-15:30 | Molecular Dynamics Tutorial |
| Coffee Break | |
| 15:45-18:00 | Molecular Dynamics Tutorial (continued) |
Wed, 3/22: Introduction to Bioinformatics, Z. Luthey-Schulten
| 09:00-10:00 | Introduction to Bioinformatics: Sequence, Structure, and Alignment |
| 10:00-10:40 | Evolutionary Concepts in Bioinformatics |
| Coffee Break | |
| 11:00-11:50 | Application of Bioinformatics |
| 11:50-12:00 | Daily Q & A |
| Lunch Break | |
| 14:00-16:30 | Evolution of Protein Structure - Aspartyl tRNA Synthetase |
| Coffee Break | |
| 16:45-18:00 | Evolution of Protein Structure - Aspartyl tRNA Synthetase (continued) |
Thu, 3/23: Simulating Membrane Channels, E. Tajkhorshid
| 09:00-10:00 | Introduction and Examples |
| 10:00-10:40 | Transport in Aquaporins |
| Coffee Break | |
| 11:00-11:50 | Nanotubes |
| 11:50-12:00 | Daily Q&A |
| Lunch Break | |
| 14:00-15:30 | Nanotubes/IMD |
| Coffee Break | |
| 15:45-18:00 | Stretching Deca-alanine/Open tutorial work time |
