Computational Biophysics Workshop - Boston, Dec. 5-9, 2004
TCB Hands-on Workshop in Boston
Program
Location
The Colonnade Hotel in Boston
Sun, 12/5: Introduction to Protein
Structure and
Dynamics
Braemore/Kenmore Room
| 08:30-09:00 |
Breakfast |
| 09:00-09:30 |
Opening Remarks |
| 09:30-10:40 |
Molecular Graphics Perspective of Protein
Structure and
Function
|
| Coffee Break |
|
| 11:00-11:50 |
Molecular Dynamics Method |
| 11:50-12:00 |
Daily Q & A |
| Lunch Break |
|
| 14:00-14:45 |
Overview of Hands-on Sessions |
| 15:00-15:30 |
Molecular Graphics Tutorial |
| Coffee Break |
|
| 15:45-18:00 |
Molecular Graphics Tutorial (continued) |
Mon, 12/6: Statistical Mechanics of
Proteins
Braemore/Kenmore Room
| 08:30-09:00 |
Breakfast |
| 09:00-10:00 |
Equilibrium Properties of Proteins |
| 10:00-10:40 |
Nonequilibrium Properties of Proteins |
| Coffee Break |
|
| 11:00-11:50 |
Simulated Cooling of Proteins |
| 11:50-12:00 |
Daily Q & A |
| Lunch Break |
|
| 14:00-15:30 |
Molecular Dynamics Tutorial |
| Coffee Break |
|
| 15:45-18:00 |
Molecular Dynamics Tutorial
(continued) |
Tue, 12/7: Introduction to
Bioinformatics
Boston Ballroom
| 08:30-09:00 |
Breakfast |
| 09:00-10:00 |
Introduction to Bioinformatics:
Sequence,
Structure, and Alignment |
| 10:00-10:40 |
Evolutionary Concepts in
Bioinformatics |
| Coffee Break |
|
| 11:00-11:50 |
Application of Bioinformatics |
| 11:50-12:00 |
Daily Q & A |
| Lunch Break |
|
| 14:00-15:30 |
Bioinformatics Study of Aquaporins |
| Coffee Break |
|
| 15:45-16:00 |
Bioinformatics Study of Aquaporins
(continued) |
| 16:00-18:00 |
Bioinformatics Study of Aminoacyl
tRNA
Synthetases |
Wed, 12/8: Parameters for Classical
Force Fields
Braemore/Kenmore Room
| 08:30-09:00 |
Breakfast |
| 09:00-10:00 |
Introduction to Classical Force Fields
|
| 10:00-10:40 |
Force Fields Parameterization
|
| Coffee Break |
|
| 11:00-11:50 |
Applications
|
| 11:50-12:00 |
Daily Q&A
|
| Lunch Break |
|
| 14:00-15:30 |
Paramaterizing a Novel Residue |
| Coffee Break |
|
| 15:45-18:00 |
Topology File Tutorial |
Thu, 12/9: Simulating Membrane
Channels
Braemore/Kenmore Room
| 08:30-09:00 |
Breakfast |
| 09:00-10:00 |
Introduction and Examples
|
| 10:00-10:40 |
Transport in Aquaporins
|
| Coffee Break |
|
| 11:00-11:50 |
Nanotubes
|
| 11:50-12:00 |
Daily Q&A
|
| Lunch Break |
|
| 14:00-15:00 |
Nanotubes |
| 15:00-15:30 |
Molecular Dynamics Tutorial
(continued) |
| Coffee Break |
|
| 15:45-18:00 |
Molecular Dynamics Tutorial
(continued) |
.
