From: JC Gumbart (
Date: Mon May 26 2008 - 11:17:49 CDT

VMD should be able to do whatever you want with a little TCL
scripting. There's also a way to track the distance between atoms
using Labels in VMD, which might be easier for you. Check out the
VMD tutorial if you already haven't for more specifics.

On May 23, 2008, at 1:54 PM, Aaron Osysko wrote:

> I am working with conotoxins and I am trying to track the distances
> between sulfur atoms in my chain. Also I need to extract specific
> coordinates from the .dcd created through the molecular dynamics.
> Any help is much appreciated.
> Thanks,
> Aaron Osysko
> Saint Francis University
> Undergraduate Researcher

** Visit for more info on majordomo