From: JC Gumbart (
Date: Thu Mar 13 2008 - 15:16:28 CDT

You can do both of these in VMD using the "measure" command. Check
the User's Guide for more specifics:
vmd/current/docs.html (search, for example, SASA).


On Mar 12, 2008, at 10:47 AM, Seah Harold wrote:

> Hi i would like to enquire how to get a plot of radius of gyration
> of ubiquitin against time, change of solvent accessible surface area
> (SASA) of ubiquitin with time?? Is it through namd plot?
> Express yourself and stay connected with the latest Windows Live
> Messenger! Windows Live Messenger

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