Class Index

_ | a | b | c | d | e | f | g | h | i | l | m | n | o | p | q | r | s | t | u | v | w | x | z

_	CudaPmeXInitMsg	NodeReduction
	CudaPmeXYInitMsg	nodesort
__sort_entry	CudaPmeXYZInitMsg	nonbonded
a	CudaRattleElem	NonbondedExclValue
	CudaRattleParam	notZero
ABoundAngleRestraint	CudaStaticAssert	NumDevicesMsg
ABoundDiheRestraint	CudaStaticAssert< true >	o
ABoundDistRestraint	cudaTensor
ABoundPosRestraint	CudaThole	ObjectArena
ADiheRestraint	CudaTholeStage	ofstream_namd
ADistRestraint	CudaTileListKernel	OneFourNbThole
AFixedAngleRestraint	cudaVector	OneFourNbTholeElem
AFixedDiheRestraint	d	Output
AFixedDistRestraint		OutputAtomRecord
AFixedPosRestraint	ParseOptions::DataElement	OwnerBox
AForcingAngleRestraint	DataExchanger	p
AForcingDiheRestraint	DataMessage
AForcingDistRestraint	datastream	Pairlists
AForcingPosRestraint	DataStreamMsg	PairTable
AGroup	dcd_params	PAL
ALambdaControl	DeviceBuffer	ParallelIOMgr
ALambdaManager	DeviceCUDA	Parameters
AlchData	DeviceDataMsg	ParseOptions
Alg7	dihedral	Patch
AlgNbor	dihedral_params	patch_sortop_curve_a
AlgRecBisection	DihedralElem	patch_sortop_curve_b
AlignVector	DihedralTable	patch_sortop_curve_c
Ambertoppar	DihedralValue	PatchData
Ambertoppar (AmberParm7Reader)	DLLoader (dlloader)	PatchData (msm)
AnAngleRestraint	DLLoaderInterface (dlloader)	PatchDataSOA
angle	doublecomplex	patchDataStrc
angle_params	drude_constants	PatchDiagram (msm)
AngleElem	dummyData	PatchElem
AngleTable	e	PatchInfo
AngleValue		patchInfo
aniso	eABF	PatchLevelPmeData
AnisoElem	eABF1D	PatchMap
APosRestraint	eABF2D	PatchMapMsg
ARestraint	CudaPmeOneDevice::EnergyVirial	PatchMgr
ARestraintManager	Entry	PatchPairRecord
Array (msm)	EntryGlob	PatchProxyListMsg
Array	EwaldParticle	ComputeMap::PatchRec
assert_ProxyResultVarsizeMsg	ExchangeAtomsMsg	CudaComputeNonbonded::PatchRecord
atom_constants	ExchangeAtomsReqMsg	PatchRecord
atom_name_info	ExclElem	PatchSend (msm)
AtomCoord (msm)	ExclSigInfo	Rebalancer::pcpair
AtomCstInfo	Exclusion	PDB
atomData	ExclusionCheck	PDBAtom
atomID_less	ExclusionSignature	PDBAtomRecord
AtomMap	exlist_sortop	PDBData
AtomMapper	ExtCoordMsg	PDBHetatm
AtomNameIdx	ExtForce	PDBUnknown
AtomsCntPerPatchMsg	ExtForceMsg	pe_sortop_bit_reversed
AtomSigInfo	f	WorkDistrib::pe_sortop_compact
AtomSignature		pe_sortop_coord_x
AtomTable	FFTCompute	pe_sortop_coord_y
AVector	FileStack	WorkDistrib::pe_sortop_diffuse
b	FinishWorkMsg	TopoManagerWrapper::pe_sortop_topo
	Flags	per_atom_flags
BackEnd	floatcomplex	pid_sortop_reverse_priority
BasicAtomInfo	OutputAtomRecord::floatVals	PluginIOMgr
BlockDiagram (msm)	FloatVector	PmeAckMsg
BlockIndex (msm)	FmmSerialCoordMsg	PmeAtomFiler
BlockSend (msm)	FmmSerialForceMsg	PmeAtomMsg
BOCgroup	FoldFactor (msm)	PmeAtomPencilMsg
BOID	FortranData (AmberParm7Reader)	PmeAtomStorage
bond	FortranFormatSpecifier (AmberParm7Reader)	PmeBlockMsg
bond_params	four_body_consts	PmeDoneMsg
ComputeBondedCUDAKernel::BondedVirial	FullAtom	PmeEvirMsg
BondElem	g	PmeForceMsg
BondTable		PmeForcePencilMsg
BondValue	GBISCoordMsg	PmeGrid
BoundingBox	GBISForceMsg	PmeGridMsg
Box	GBISParamStruct	PmeKSpace
BroadcastClient	GenericAngle	PmeKSpaceCompute
BroadcastClientElem	GenericAtom	PmeLaunchMsg
BroadcastMgr	GenericBond	PmeParticle
BroadcastMsg	GenericDihedral	PmePencil
c	GenericMol	PmePencilInitMsg
	GlobalGPUMgr	PmePencilInitMsgData
C1Matrix	GlobalMaster	PmePencilMap
C1Vector	GlobalMasterEasy	PmePencilX
Controller::checkpoint	GlobalMasterFreeEnergy	PmePencilXMap
HomePatch::checkpoint_t	GlobalMasterIMD	PmePencilXY
CheckpointAtomsMsg	GlobalMasterMisc	PmePencilXYMap
CheckpointAtomsReqMsg	GlobalMasterServer	PmePencilXYZ
CheckpointMsg	GlobalMasterSMD	PmePencilXYZMap
CheckStep	GlobalMasterSymmetry	PmePencilY
CkPrintf_stringbuf	GlobalMasterTcl	PmePencilZ
ClusterCoorElem	GlobalMasterTest	PmeRealSpace
ClusterCoorMsg	GlobalMasterTMD	PmeRealSpaceCompute
ClusterElem	GMWakeMsg	PmeRunMsg
ClusterSizeMsg	go_pair	PmeSharedTransMsg
CollectionMaster	go_val	PmeSharedUntransMsg
CollectionMgr	Grid (msm)	PmeStartMsg
CollectLoadsMsg	GridFixed (msm)	PmeTransMsg
CollectProxyVectorInstance	GridforceFullBaseGrid	PmeTranspose
CollectProxyVectorSequence	GridforceFullMainGrid	PmeUntransMsg
CollectionMgr::CollectVectorInstance	GridforceFullSubGrid	PmeXPencil
CollectionMaster::CollectVectorInstance	GridforceGrid	PmeYPencil
CollectionMaster::CollectVectorInstanceDcdSelection	GridforceLiteGrid	PmeZPencil
CollectVectorMsg	GridforceFullBaseGrid::GridIndices	pntChrgDist
CollectionMgr::CollectVectorSequence	GridMsg	Pointer
CollectionMaster::CollectVectorSequence	GroGaussPair	position_index
CollectionMaster::CollectVectorSequenceDcdSelection	GroLJPair	PressureProfileReduction
CollectVectorVarMsg	gromacsPair	PriorityQueue (msm)
colvarproxy_namd	GromacsPairElem	processorInfo
Communicate	GromacsPairValue	ProxyCombinedResultMsg
CompAtom	GromacsTopFile	ProxyCombinedResultRawMsg
CompAtomExt	GroupInitMsg	ProxyDataMsg
CompAtomExtCopy	GroupRestraintList	ProxyElem
Compute	GroupRestraintParam	ProxyGBISP1ResultMsg
ComputeAngles	h	ProxyGBISP2DataMsg
ComputeAniso		ProxyGBISP2ResultMsg
ComputeBondedCUDAKernel	HashPool	ProxyGBISP3DataMsg
ComputeBonds	HashPoolAdaptorT	ProxyListInfo
ComputeConsForce	HashReal	ProxyMgr
ComputeConsForceMsg	HashString	ProxyNodeAwareSpanningTreeMsg
ComputeConsTorque	heapIterator	ProxyPatch
ComputeCrossterms	heapRecord	ProxyResultMsg
ComputeCUDAMgr	HomePatch	ProxyResultVarsizeMsg
ComputeCylindricalBC	HomePatchElem	ProxySpanningTreeMsg
ComputeMap::ComputeData	HydroBasedMsg	ProxyTree
ComputeDihedrals	HydrogenGroupID	proxyTreeNode
ComputeDPMEDataMsg	i	ProxyUsage
ComputeDPMEResultsMsg		ProxyUsageKey
ComputeEField	idIndxStr	q
ComputeEwald	ijpair
ComputeEwaldMsg	ijpair_sortop_bit_reversed	QMAtomData
ComputeExcls	IMDBox	QMCoordMsg
ComputeExt	IMDEnergies	QMForce
ComputeExtAtom	IMDheader	QMForceMsg
ComputeExtMgr	IMDOutput	QMGrpCalcMsg
ComputeFmmSerial	IMDSessionInfo	QMGrpResMsg
ComputeFmmSerialAtom	IMDTime	QMPntChrgMsg
ComputeFmmSerialMgr	improper	qmSolvData
ComputeFullDirect	improper_params	r
ComputeGBISAtom	ImproperElem
ComputeGBISser	ImproperValue	Random
ComputeGBISserMgr	indexed_nbthole_pair	HomePatch::RattleList
ComputeGlobal	indexed_table_pair	RattleParam
ComputeGlobalDataMsg	indexed_vdw_pair	Rebalancer
ComputeGlobalResultsMsg	indexed_vdw_pair_accel	RecBisection
ComputeGridForce	IndexFile	RecvDeviceMsg
ComputeGromacsPair	IndexRange (msm)	ReductionMgr
ComputeHomePatch	InfoRecord	ReductionRegisterMsg
ComputeHomePatches	infostream	ReductionSet
ComputeHomeTuples	InitDeviceMsg	ReductionSetData
ComputeImpropers	InitDeviceMsg2	ReductionSubmitMsg
computeInfo	InputAtom	ReductionValue
ComputeLCPO	Int2	RefineOnly
ComputeLjPmeSerial	Int3	RefineTorusLB
ComputeLjPmeSerialMgr	OutputAtomRecord::integerVals	refSelStr
ComputeLonepairsCUDA	InterpParams_t	RegisterPatchMsg
ComputeMap	intpair	RegisterProxyMsg
ComputeMapChangeMsg	IRSet	ReplicaDcdAckMsg
ComputeMgr	isEmpty	ReplicaDcdDataMsg
ComputeMoa	isWater	ReplicaDcdInitMsg
ComputeMsm	Iterator	RequireReduction
ComputeMsmMgr	Ivec (msm)	RequireReductionCharm
ComputeMsmSerial	l	RequireReductionShared
ComputeMsmSerialAtom		ResidueLookupElem
ComputeMsmSerialMgr	LargeIRSet	ResizeArray
ComputeNonbondedPair	Lattice	ResizeArrayIter
ComputeNonbondedSelf	LCPOAtom	ResizeArrayPrimIter
ComputeNonbondedUtil	LCPONeighborList	ResizeArrayRaw
ComputeNonbondedWorkArrays	LdbCoordinator	Results
ComputeOneFourNbThole	LdbMigrateMsg	RunningAverage
ComputePatch	LincsSolver	RunWithAffinity
ComputePatchPair	listNode	s
ComputePme	LjPmeCompute
ComputePmeCUDA	LjPmeGrid	ScriptParamMsg
ComputePmeCUDADevice	LjPmeKSpace	ScriptTcl
ComputePmeCUDAMgr	LjPmeMgr	seg_resid
ComputePmeMgr	LjPmeRealSpace	Sequencer
ComputePmeUtil	LjPmeSerialAtom	SetLatticeMsg
ComputeQM	LjPmeSerialCoordMsg	SettleParameters
ComputeQMAtom	LjPmeSerialForceMsg	OutputAtomRecord::shortVals
ComputeQMMgr	LJTable	SimParameters
ComputeQMPntChrg	LocalID	SimpleBroadcastObject
CudaComputeNonbonded::ComputeRecord	localIDResult	ScriptTcl::SimpleBroadcastObjectWrapper
ComputeRestraints	LocalLBInfoMsg	SlaveInitMsg
ComputeSelfAngles	LocalPmeInfo	SortableResizeArray
ComputeSelfAniso	LocalWorkMsg	SortedArray
ComputeSelfBonds	ComputeLonepairsCUDA::LonepairBisector	sortop_base
ComputeSelfCrossterms	ComputeLonepairsCUDA::LonepairColinear	sortop_bit_reversed
ComputeSelfDihedrals	ComputeLonepairsCUDA::LonepairRelative	sortop_SOA
ComputeSelfExcls	lphost	sortop_x
ComputeSelfGromacsPair	LSSDataStr	sortop_y
ComputeSelfImpropers	lssDistSort	sortop_z
ComputeSelfOneFourNbThole	LSSSubsDat	sparseMatrix
ComputeSelfThole	m	SplitComputesMsg
ComputeSelfTuples		StreamMessage
ComputeSphericalBC	main	StringList
ComputeStir	Map (msm)	SubmitReduction
ComputeTclBC	MathArray	SubmitReductionCharm
ComputeThole	Matrix4	SubmitReductionShared
ConfigList	Matrix4Symmetry	Sync
ConfigList::ConfigListNode	Matrix4TMD	SynchronousCollectives
ConstPointer	maxHeap	SynchronousCollectivesMulticastMsg
constraintTuple	Measure	t
Controller	meMMQMGrp
ControllerBroadcasts	memusageinit	table_pair_params
ControllerState	MGridforceParams	LJTable::TableEntry
cptr_sortop_priority	MGridforceParamsList	TaggedMsg
CpuPmeAtomStorage	MigrateAtomsCombinedMsg	Tensor
cr_sortop_distance	MigrateAtomsMsg	thole
cr_sortop_reverse_priority	MigrationInfo	TholeElem
crossterm	minHeap	TileExcl
crossterm_params	minpoint	TileList
CrosstermData	MIStream	TileListStat
CrosstermElem	MoaData	TileListVirialEnergy
CrosstermValue	Molecule	TopoManagerWrapper
Controller::CthThreadWrapper	MolInfoMsg	TorusLB
cuda_args_t	MolInst	Transform
ComputePmeMgr::cuda_submit_charges_args	MOStream	TransposeBatch
CudaAlchFlags	MoveAllByMsg	TupleCounts
CudaAlchLambdas	MoveAtomMsg	TupleData
CudaAlchParameters	MoveInputAtomsMsg	TupleDataStage
CudaAngle	MovePatch	TupleDataStagePeer
CudaAngleStage	MovePatchAtomsMsg	TupleIntArrays
CudaAngleValue	MovePatchesMsg	TupleIntArraysContiguous
CudaAniso	MovingAverage	TupleIntArraysPeer
CudaAnisoStage	MsmBlock	TuplePatchElem
CudaAtom	MsmBlockKernel	TupleSignature
CudaBond	MsmBlockMap	TupleSizes
CudaBondStage	MsmBlockProxyMsg	TupleStrider
CudaBondValue	MsmC1HermiteBlock	TupleString
CudaComputeGBISKernel	MsmC1HermiteBlockProxyMsg	TupleStringHash
CudaComputeNonbonded	MsmC1HermiteGridCutoff	TwoLevelParam
CudaComputeNonbondedKernel	MsmC1HermiteGridCutoffProxyMsg	u
CudaComputeNonbondedMsg	MsmC1HermiteGridCutoffSetupMsg
CudaComputeRecord	MsmGridCutoff	UniqueSet
CudaCrossterm	MsmGridCutoffInitMsg	UniqueSetIter
CudaCrosstermStage	MsmGridCutoffKernel	UniqueSetRaw
CudaCrosstermValue	MsmGridCutoffMap	UniqueSortedArray
CudaDihedral	MsmGridCutoffProxyMsg	UnregisterProxyMsg
CudaDihedralStage	MsmGridCutoffSetupMsg	v
CudaDihedralValue	MsmInitMsg
CudaExclusion	MsmProfiler	validRattle
CudaExclusionStage	MsmSerialCoordMsg	vdw_pair_params
CudaFFTCompute	MsmSerialForceMsg	vdw_params
CudaForce	MsmTimer	vdw_val
CudaGlobalMasterClient (CudaGlobalMaster::CUDAGM_NS)	MStringStrider	VDWTable
CudaGlobalMasterServer	MultiString	vect
CudaLocalRecord	n	Vector
CudaMInfo		VirialEnergy
CudaNBConstants	NamdCentLB	vmdforce
CudaNonbondedTables	NamdDummyLB	w
CudaPatchRecord	NamdHybridLB
CudaPeerRecord	NamdProfileEvent	wkf_timer
CudaPmeAtomStorage	NamdState	wkfmsgtimer
CudaPmeKSpaceCompute	nbthole_pair_params	WorkDistrib
CudaPmeOneDevice	nbthole_pair_value	WorkIndex
CudaPmePencilX	netint	x
CudaPmePencilXY	NL_Msm_t
CudaPmePencilXYZ	Node	XXH32_canonical_t
CudaPmePencilY	NodeBroadcast	XXH64_canonical_t
CudaPmePencilZ	NodePmeInfo	z
CudaPmeRealSpaceCompute	NodePmeMgr
CudaPmeTranspose	NodeProxyMgr	zVector

_ | a | b | c | d | e | f | g | h | i | l | m | n | o | p | q | r | s | t | u | v | w | x | z