  __sort_entry | |
| AGroup | |
| ALambdaControl | |
| ALambdaManager | |
| AmberParm7Reader::Ambertoppar | |
| angle | |
| angle_params | |
| AngleElem | |
| AngleTable | |
| AngleValue | |
| aniso | |
| AnisoElem | |
 ARestraint | |
 ADiheRestraint | |
| ABoundDiheRestraint | |
| AFixedDiheRestraint | |
 AForcingDiheRestraint | |
| ADistRestraint | |
| ABoundDistRestraint | |
| AFixedDistRestraint | |
| AForcingDistRestraint | |
| AnAngleRestraint | |
| ABoundAngleRestraint | |
| AFixedAngleRestraint | |
| AForcingAngleRestraint | |
 APosRestraint | |
 ABoundPosRestraint | |
| AFixedPosRestraint | |
| AForcingPosRestraint | |
| ARestraintManager | |
| msm::Array< T > | |
| Array< Elem, Size > | |
| MathArray< Elem, Size > | |
| MathArray< double, 7 > | |
| msm::Array< AtomCoord > | |
| msm::Array< C1Matrix > | |
| msm::Array< C1Vector > | |
| msm::Array< CProxy_MsmBlock > | |
| msm::Array< CProxy_MsmC1HermiteBlock > | |
| Array< double, Size > | |
| msm::Array< Float > | |
| msm::Array< Force > | |
| msm::Array< int > | |
| msm::Array< msm::BlockDiagram > | |
| msm::Array< msm::BlockSend > | |
| msm::Array< msm::FoldFactor > | |
| msm::Array< msm::Grid< C1Matrix > > | |
| msm::Array< msm::Grid< Float > > | |
| msm::Array< msm::Grid< msm::BlockDiagram > > | |
| msm::Array< msm::IndexRange > | |
| msm::Array< msm::PatchDiagram > | |
| msm::Array< msm::PatchSend > | |
| msm::Array< Mtype > | |
| Array< PatchData * > | |
| msm::Array< Vtype > | |
| assert_ProxyResultVarsizeMsg | |
| atom_constants | |
| atom_name_info | |
| msm::AtomCoord | |
| AtomCstInfo | |
| atomID_less | |
| AtomMap | |
| AtomMapper | |
| AtomNameIdx | |
| AtomSigInfo | |
| AtomSignature | |
| AtomTable | |
| AVector | |
| BackEnd | |
| BasicAtomInfo | |
| msm::BlockDiagram | |
| msm::BlockIndex | |
| msm::BlockSend | |
| BOCgroup | |
| BOID | |
| bond | |
| bond_params | |
| ComputeBondedCUDAKernel::BondedVirial< T > | |
| BondElem | |
| BondTable | |
| BondValue | |
| BoundingBox | |
| Box< Owner, Data > | |
| Box< Patch, CompAtom > | |
| Box< Patch, GBReal > | |
| Box< Patch, int > | |
| Box< Patch, Real > | |
| Box< Patch, Results > | |
| BroadcastClient | |
| SimpleBroadcastObject< T > | |
| SimpleBroadcastObject< BigReal > | |
| SimpleBroadcastObject< int > | |
| SimpleBroadcastObject< Tensor > | |
| SimpleBroadcastObject< Vector > | |
| BroadcastClientElem | |
| C1Matrix | |
| C1Vector | |
| CBase_BroadcastMgr | |
| BroadcastMgr | |
| CBase_CollectionMgr | |
| CollectionMgr | |
| CBase_ComputeCUDAMgr | |
| ComputeCUDAMgr | |
| CBase_ComputeExtMgr | |
| ComputeExtMgr | |
| CBase_ComputeFmmSerialMgr | |
| ComputeFmmSerialMgr | |
| CBase_ComputeGBISserMgr | |
| ComputeGBISserMgr | |
| CBase_ComputeMgr | |
| ComputeMgr | |
| CBase_ComputeMsmMgr | |
| ComputeMsmMgr | |
| CBase_ComputeMsmSerialMgr | |
| ComputeMsmSerialMgr | |
| CBase_ComputePmeCUDADevice | |
| ComputePmeCUDADevice | |
| CBase_ComputePmeCUDAMgr | |
| ComputePmeCUDAMgr | |
| CBase_ComputePmeMgr | |
| ComputePmeMgr | |
| CBase_ComputeQMMgr | |
| ComputeQMMgr | |
| CBase_CudaPmePencilX | |
| CudaPmePencilX | |
| CBase_CudaPmePencilXY | |
| CudaPmePencilXY | |
| CBase_CudaPmePencilXYZ | |
| CudaPmePencilXYZ | |
| CBase_CudaPmePencilY | |
| CudaPmePencilY | |
| CBase_CudaPmePencilZ | |
| CudaPmePencilZ | |
| CBase_DataExchanger | |
| DataExchanger | |
| CBase_LdbCoordinator | |
| LdbCoordinator | |
| CBase_MsmBlock | |
| MsmBlock | |
| CBase_MsmC1HermiteBlock | |
| MsmC1HermiteBlock | |
| CBase_MsmC1HermiteGridCutoff | |
| MsmC1HermiteGridCutoff | |
| CBase_MsmGridCutoff | |
| MsmGridCutoff | |
| CBase_MsmProfiler | |
| MsmProfiler | |
| CBase_MsmTimer | |
| MsmTimer | |
| CBase_Node | |
| Node | |
| CBase_NodePmeMgr | |
| NodePmeMgr | |
| CBase_NodeProxyMgr | |
| NodeProxyMgr | |
| CBase_ParallelIOMgr | |
| ParallelIOMgr | |
| CBase_PatchMgr | |
| PatchMgr | |
| CBase_PmeAtomFiler | |
| PmeAtomFiler | |
| CBase_PmePencilMap | |
| PmePencilMap | |
| CBase_PmePencilX | |
| PmePencilX | |
| CBase_PmePencilXMap | |
| PmePencilXMap | |
| CBase_PmePencilXY | |
| PmePencilXY | |
| CBase_PmePencilXYMap | |
| PmePencilXYMap | |
| CBase_PmePencilXYZ | |
| PmePencilXYZ | |
| CBase_PmePencilXYZMap | |
| PmePencilXYZMap | |
| CBase_PmePencilY | |
| PmePencilY | |
| CBase_PmePencilZ | |
| PmePencilZ | |
| CBase_PmeXPencil | |
| PmePencil< CBase_PmeXPencil > | |
| PmeXPencil | |
| CBase_PmeYPencil | |
| PmePencil< CBase_PmeYPencil > | |
| PmeYPencil | |
| CBase_PmeZPencil | |
| PmePencil< CBase_PmeZPencil > | |
| PmeZPencil | |
| CBase_ProxyMgr | |
| ProxyMgr | |
| CBase_Sync | |
| Sync | |
| CBase_WorkDistrib | |
| WorkDistrib | |
| CentralLB | |
| NamdCentLB | |
| NamdDummyLB | |
| Chare | |
| CollectionMaster | |
| main | |
| Controller::checkpoint | |
| HomePatch::checkpoint_t | |
| CkArrayMap | |
| MsmBlockMap | |
| MsmGridCutoffMap | |
| CkMcastBaseMsg | |
| GridMsg | |
| MsmC1HermiteGridCutoffSetupMsg | |
| MsmGridCutoffSetupMsg | |
| ClusterCoorElem | |
| ClusterElem | |
| CMessage_AtomsCntPerPatchMsg | |
| AtomsCntPerPatchMsg | |
| CMessage_BroadcastMsg | |
| BroadcastMsg | |
| CMessage_CheckpointAtomsMsg | |
| CheckpointAtomsMsg | |
| CMessage_CheckpointAtomsReqMsg | |
| CheckpointAtomsReqMsg | |
| CMessage_CheckpointMsg | |
| CheckpointMsg | |
| CMessage_ClusterCoorMsg | |
| ClusterCoorMsg | |
| CMessage_ClusterSizeMsg | |
| ClusterSizeMsg | |
| CMessage_CollectLoadsMsg | |
| CollectLoadsMsg | |
| CMessage_CollectVectorMsg | |
| CollectVectorMsg | |
| CMessage_CollectVectorVarMsg | |
| CollectVectorVarMsg | |
| CMessage_ComputeConsForceMsg | |
| ComputeConsForceMsg | |
| CMessage_ComputeDPMEDataMsg | |
| ComputeDPMEDataMsg | |
| CMessage_ComputeDPMEResultsMsg | |
| ComputeDPMEResultsMsg | |
| CMessage_ComputeEwaldMsg | |
| ComputeEwaldMsg | |
| CMessage_ComputeGlobalDataMsg | |
| ComputeGlobalDataMsg | |
| CMessage_ComputeGlobalResultsMsg | |
| ComputeGlobalResultsMsg | |
| CMessage_ComputeMapChangeMsg | |
| ComputeMapChangeMsg | |
| CMessage_CudaComputeNonbondedMsg | |
| CudaComputeNonbondedMsg | |
| CMessage_CudaPmeXInitMsg | |
| CudaPmeXInitMsg | |
| CMessage_CudaPmeXYInitMsg | |
| CudaPmeXYInitMsg | |
| CMessage_CudaPmeXYZInitMsg | |
| CudaPmeXYZInitMsg | |
| CMessage_DataStreamMsg | |
| DataStreamMsg | |
| CMessage_DeviceDataMsg | |
| DeviceDataMsg | |
| CMessage_ExchangeAtomsMsg | |
| ExchangeAtomsMsg | |
| CMessage_ExchangeAtomsReqMsg | |
| ExchangeAtomsReqMsg | |
| CMessage_ExtCoordMsg | |
| ExtCoordMsg | |
| CMessage_ExtForceMsg | |
| ExtForceMsg | |
| CMessage_FinishWorkMsg | |
| FinishWorkMsg | |
| CMessage_FmmSerialCoordMsg | |
| FmmSerialCoordMsg | |
| CMessage_FmmSerialForceMsg | |
| FmmSerialForceMsg | |
| CMessage_GBISCoordMsg | |
| GBISCoordMsg | |
| CMessage_GBISForceMsg | |
| GBISForceMsg | |
| CMessage_GridMsg | |
| GridMsg | |
| CMessage_GroupInitMsg | |
| GroupInitMsg | |
| CMessage_HydroBasedMsg | |
| HydroBasedMsg | |
| CMessage_InitDeviceMsg | |
| InitDeviceMsg | |
| CMessage_InitDeviceMsg2 | |
| InitDeviceMsg2 | |
| CMessage_LdbMigrateMsg | |
| LdbMigrateMsg | |
| CMessage_LocalLBInfoMsg | |
| LocalLBInfoMsg | |
| CMessage_LocalWorkMsg | |
| LocalWorkMsg | |
| CMessage_MigrateAtomsCombinedMsg | |
| MigrateAtomsCombinedMsg | |
| CMessage_MigrateAtomsMsg | |
| MigrateAtomsMsg | |
| CMessage_MolInfoMsg | |
| MolInfoMsg | |
| CMessage_MoveAllByMsg | |
| MoveAllByMsg | |
| CMessage_MoveAtomMsg | |
| MoveAtomMsg | |
| CMessage_MoveInputAtomsMsg | |
| MoveInputAtomsMsg | |
| CMessage_MovePatchAtomsMsg | |
| MovePatchAtomsMsg | |
| CMessage_MovePatchesMsg | |
| MovePatchesMsg | |
| CMessage_MsmBlockProxyMsg | |
| MsmBlockProxyMsg | |
| CMessage_MsmC1HermiteBlockProxyMsg | |
| MsmC1HermiteBlockProxyMsg | |
| CMessage_MsmC1HermiteGridCutoffProxyMsg | |
| MsmC1HermiteGridCutoffProxyMsg | |
| CMessage_MsmC1HermiteGridCutoffSetupMsg | |
| MsmC1HermiteGridCutoffSetupMsg | |
| CMessage_MsmGridCutoffInitMsg | |
| MsmGridCutoffInitMsg | |
| CMessage_MsmGridCutoffProxyMsg | |
| MsmGridCutoffProxyMsg | |
| CMessage_MsmGridCutoffSetupMsg | |
| MsmGridCutoffSetupMsg | |
| CMessage_MsmInitMsg | |
| MsmInitMsg | |
| CMessage_MsmSerialCoordMsg | |
| MsmSerialCoordMsg | |
| CMessage_MsmSerialForceMsg | |
| MsmSerialForceMsg | |
| CMessage_NonbondedCUDASkipMsg | |
| NonbondedCUDASkipMsg | |
| CMessage_NonbondedCUDASlaveMsg | |
| NonbondedCUDASlaveMsg | |
| CMessage_NonbondedMICSkipMsg | |
| NonbondedMICSkipMsg | |
| CMessage_NonbondedMICSlaveMsg | |
| NonbondedMICSlaveMsg | |
| CMessage_NumDevicesMsg | |
| NumDevicesMsg | |
| CMessage_PatchMapMsg | |
| PatchMapMsg | |
| CMessage_PatchProxyListMsg | |
| PatchProxyListMsg | |
| CMessage_PmeAckMsg | |
| PmeAckMsg | |
| CMessage_PmeAtomMsg | |
| PmeAtomMsg | |
| CMessage_PmeAtomPencilMsg | |
| PmeAtomPencilMsg | |
| CMessage_PmeBlockMsg | |
| PmeBlockMsg | |
| CMessage_PmeDoneMsg | |
| PmeDoneMsg | |
| CMessage_PmeEvirMsg | |
| PmeEvirMsg | |
| CMessage_PmeForceMsg | |
| PmeForceMsg | |
| CMessage_PmeForcePencilMsg | |
| PmeForcePencilMsg | |
| CMessage_PmeGridMsg | |
| PmeGridMsg | |
| CMessage_PmeLaunchMsg | |
| PmeLaunchMsg | |
| CMessage_PmePencilInitMsg | |
| PmePencilInitMsg | |
| CMessage_PmeRunMsg | |
| PmeRunMsg | |
| CMessage_PmeSharedTransMsg | |
| PmeSharedTransMsg | |
| CMessage_PmeSharedUntransMsg | |
| PmeSharedUntransMsg | |
| CMessage_PmeStartMsg | |
| PmeStartMsg | |
| CMessage_PmeTransMsg | |
| PmeTransMsg | |
| CMessage_PmeUntransMsg | |
| PmeUntransMsg | |
| CMessage_ProxyCombinedResultMsg | |
| ProxyCombinedResultMsg | |
| CMessage_ProxyCombinedResultRawMsg | |
| ProxyCombinedResultRawMsg | |
| CMessage_ProxyDataMsg | |
| ProxyDataMsg | |
| CMessage_ProxyGBISP1ResultMsg | |
| ProxyGBISP1ResultMsg | |
| CMessage_ProxyGBISP2DataMsg | |
| ProxyGBISP2DataMsg | |
| CMessage_ProxyGBISP2ResultMsg | |
| ProxyGBISP2ResultMsg | |
| CMessage_ProxyGBISP3DataMsg | |
| ProxyGBISP3DataMsg | |
| CMessage_ProxyNodeAwareSpanningTreeMsg | |
| ProxyNodeAwareSpanningTreeMsg | |
| CMessage_ProxyResultMsg | |
| ProxyResultMsg | |
| CMessage_ProxyResultVarsizeMsg | |
| ProxyResultVarsizeMsg | |
| CMessage_ProxySpanningTreeMsg | |
| ProxySpanningTreeMsg | |
| CMessage_QMCoordMsg | |
| QMCoordMsg | |
| CMessage_QMForceMsg | |
| QMForceMsg | |
| CMessage_QMGrpCalcMsg | |
| QMGrpCalcMsg | |
| CMessage_QMGrpResMsg | |
| QMGrpResMsg | |
| CMessage_QMPntChrgMsg | |
| QMPntChrgMsg | |
| CMessage_RecvDeviceMsg | |
| RecvDeviceMsg | |
| CMessage_ReductionRegisterMsg | |
| ReductionRegisterMsg | |
| CMessage_ReductionSubmitMsg | |
| ReductionSubmitMsg | |
| CMessage_RegisterPatchMsg | |
| RegisterPatchMsg | |
| CMessage_RegisterProxyMsg | |
| RegisterProxyMsg | |
| CMessage_ScriptParamMsg | |
| ScriptParamMsg | |
| CMessage_SetLatticeMsg | |
| SetLatticeMsg | |
| CMessage_SlaveInitMsg | |
| SlaveInitMsg | |
| CMessage_SplitComputesMsg | |
| SplitComputesMsg | |
| CMessage_UnregisterProxyMsg | |
| UnregisterProxyMsg | |
| CollectProxyVectorInstance | |
| CollectProxyVectorSequence | |
| CollectionMaster::CollectVectorInstance | |
| CollectionMgr::CollectVectorInstance | |
| CollectionMgr::CollectVectorSequence | |
| CollectionMaster::CollectVectorSequence | |
| colvarproxy | |
| colvarproxy_namd | Communication between colvars and NAMD (implementation of colvarproxy) |
| Communicate | |
| CompAtom | |
| FullAtom | |
| InputAtom | |
| CompAtomExt | |
| FullAtom | |
| Compute | |
| ComputeHomePatch | |
| ComputeConsForce | |
| ComputeConsTorque | |
| ComputeCylindricalBC | |
| ComputeEField | |
| ComputeGridForce | |
| ComputeRestraints | |
| ComputeSphericalBC | |
| ComputeStir | |
| ComputeHomePatches | |
| ComputeEwald | |
| ComputeExt | |
| ComputeFmmSerial | |
| ComputeFullDirect | |
| ComputeGBISser | |
| ComputeGlobal | |
| ComputeMoa | |
| ComputeMsm | |
| ComputeMsmSerial | |
| ComputeQM | |
| ComputeTclBC | |
| ComputeHomeTuples< T, S, P > | |
| ComputeSelfTuples< T, S, P > | |
| ComputeSelfTuples< AngleElem, Angle, AngleValue > | |
| ComputeSelfAngles | |
| ComputeSelfTuples< AnisoElem, Aniso, AnisoValue > | |
| ComputeSelfAniso | |
| ComputeSelfTuples< BondElem, Bond, BondValue > | |
| ComputeSelfBonds | |
| ComputeSelfTuples< CrosstermElem, Crossterm, CrosstermValue > | |
| ComputeSelfCrossterms | |
| ComputeSelfTuples< DihedralElem, Dihedral, DihedralValue > | |
| ComputeSelfDihedrals | |
| ComputeSelfTuples< ExclElem, Exclusion, int > | |
| ComputeSelfExcls | |
| ComputeSelfTuples< GromacsPairElem, GromacsPair, GromacsPairValue > | |
| ComputeSelfGromacsPair | |
| ComputeSelfTuples< ImproperElem, Improper, ImproperValue > | |
| ComputeSelfImpropers | |
| ComputeSelfTuples< TholeElem, Thole, TholeValue > | |
| ComputeSelfThole | |
| ComputeHomeTuples< AngleElem, Angle, AngleValue > | |
| ComputeHomeTuples< AngleElem, Angle, AngleValue > | |
| ComputeAngles | |
| ComputeHomeTuples< AnisoElem, Aniso, AnisoValue > | |
| ComputeAniso | |
| ComputeHomeTuples< BondElem, Bond, BondValue > | |
| ComputeBonds | |
| ComputeHomeTuples< CrosstermElem, Crossterm, CrosstermValue > | |
| ComputeCrossterms | |
| ComputeHomeTuples< CrosstermElem, Crossterm, CrosstermValue > | |
| ComputeHomeTuples< DihedralElem, Dihedral, DihedralValue > | |
| ComputeDihedrals | |
| ComputeHomeTuples< DihedralElem, Dihedral, DihedralValue > | |
| ComputeHomeTuples< ExclElem, Exclusion, int > | |
| ComputeExcls | |
| ComputeHomeTuples< GromacsPairElem, GromacsPair, GromacsPairValue > | |
| ComputeHomeTuples< GromacsPairElem, GromacsPair, GromacsPairValue > | |
| ComputeGromacsPair | |
| ComputeHomeTuples< ImproperElem, Improper, ImproperValue > | |
| ComputeImpropers | |
| ComputeHomeTuples< TholeElem, Thole, TholeValue > | |
| ComputeThole | |
| ComputeHomeTuples< TholeElem, Thole, TholeValue > | |
| ComputeLCPO | |
| ComputeNonbondedCUDA | |
| ComputeNonbondedMIC | |
| ComputePatch | |
| ComputeNonbondedSelf | |
| ComputePatchPair | |
| ComputeNonbondedPair | |
| ComputePme | |
| ComputePmeCUDA | |
| CudaComputeNonbonded | |
| ComputeNonbondedCUDA::compute_record | |
| ComputeNonbondedMIC::compute_record | |
| ComputeBondedCUDAKernel | |
| ComputeMap::ComputeData | |
| ComputeExtAtom | |
| ComputeFmmSerialAtom | |
| ComputeGBISAtom | |
| ComputeMap | |
| ComputeMsmSerialAtom | |
| ComputeNonbondedUtil | |
| ComputeLCPO | |
| ComputeNonbondedCUDA | |
| ComputeNonbondedMIC | |
| ComputeNonbondedPair | |
| ComputeNonbondedSelf | |
| CudaComputeNonbonded | |
| ExclElem | |
| ComputeNonbondedWorkArrays | |
| ComputePmeUtil | |
| ComputePme | |
| ComputePmeMgr | |
| ComputeQMAtom | |
| ComputeQMPntChrg | |
| CudaComputeNonbonded::ComputeRecord | |
| ConfigList | |
| ConfigList::ConfigListNode | |
| ConstPointer | |
| ControllerBroadcasts | |
| ControllerState | |
| Controller | |
| cptr_sortop_priority | |
| cr_sortop_distance | |
| cr_sortop_reverse_priority | |
| crossterm | |
| crossterm_params | |
| CrosstermData | |
| CrosstermElem | |
| CrosstermValue | |
| cuda_args_t | |
| ComputePmeMgr::cuda_submit_charges_args | |
| CudaAngle | |
| CudaAngleValue | |
| CudaAtom | |
| CudaBond | |
| CudaBondValue | |
| CudaComputeGBISKernel | |
| CudaComputeNonbondedKernel | |
| CudaComputeRecord | |
| CudaCrossterm | |
| CudaCrosstermValue | |
| CudaDihedral | |
| CudaDihedralValue | |
| CudaExclusion | |
| CudaForce | |
| CudaNonbondedTables | |
| CudaPatchRecord | |
| CudaStaticAssert< bool > | |
| CudaStaticAssert< true > | |
| CudaTileListKernel | |
| ParseOptions::DataElement | |
| DataMessage | |
| DeviceBuffer | |
| DeviceCUDA | |
| dihedral | |
| dihedral_params | |
| DihedralElem | |
| DihedralTable | |
| DihedralValue | |
| doublecomplex | |
| drude_constants | |
| dummyData | |
| eABF | |
| eABF1D | |
| eABF2D | |
| Entry< Elem > | |
| Entry< BOID > | |
| Entry< BroadcastClientElem > | |
| Entry< ClusterCoorElem > | |
| Entry< ClusterElem > | |
| Entry< Exclusion > | |
| Entry< ProxyElem > | |
| Entry< T > | |
| Entry< TaggedMsg > | |
| Entry< TuplePatchElem > | |
| EntryGlob< Elem > | |
| EntryGlob< BOID > | |
| EntryGlob< BroadcastClientElem > | |
| EntryGlob< ClusterCoorElem > | |
| EntryGlob< ClusterElem > | |
| EntryGlob< Exclusion > | |
| EntryGlob< ProxyElem > | |
| EntryGlob< T > | |
| EntryGlob< TaggedMsg > | |
| EntryGlob< TuplePatchElem > | |
| EwaldParticle | |
| exclmask | |
| ExclSigInfo | |
| Exclusion | |
| ExclusionCheck | |
| ExclusionSignature | |
| exlist_sortop | |
| ExtForce | |
| FFTCompute | |
| CudaFFTCompute | |
| FileStack | |
| Flags | |
| float2 | |
| floatcomplex | |
| OutputAtomRecord::floatVals | |
| FloatVector | |
| msm::FoldFactor | |
| AmberParm7Reader::FortranData | |
| AmberParm7Reader::FortranFormatSpecifier | |
| four_body_consts | |
| gather_t< T, order > | |
| GBISInput< phase > | |
| GBISInput< 1 > | |
| GBISInput< 2 > | |
| GBISInput< 3 > | |
| GBISParam< phase > | |
| GBISParam< 1 > | |
| GBISParam< 2 > | |
| GBISParam< 3 > | |
| GBISParamStruct | |
| GBISResults< phase > | |
| GBISResults< 1 > | |
| GBISResults< 2 > | |
| GBISResults< 3 > | |
| GenericAngle | |
| GenericAtom | |
| GenericBond | |
| GenericDihedral | |
| GenericMol | |
| GlobalMaster | |
| colvarproxy_namd | Communication between colvars and NAMD (implementation of colvarproxy) |
| GlobalMasterEasy | |
| GlobalMasterMisc | |
| GlobalMasterFreeEnergy | |
| GlobalMasterIMD | |
| GlobalMasterSMD | |
| GlobalMasterSymmetry | |
| GlobalMasterTcl | |
| GlobalMasterTest | |
| GlobalMasterTMD | |
| GlobalMasterServer | |
| go_pair | |
| go_val | |
| GridforceFullBaseGrid | |
| GridforceFullMainGrid | |
| GridforceFullSubGrid | |
| GridforceGrid | |
| GridforceFullMainGrid | |
| GridforceLiteGrid | |
| GridforceFullBaseGrid::GridIndices | |
| GroGaussPair | |
| GroLJPair | |
| gromacsPair | |
| GromacsPairElem | |
| GromacsPairValue | |
| GromacsTopFile | |
| Group | |
| ReductionMgr | |
| HashPool< T > | |
| HashPoolAdaptorT< T > | |
| HashReal | |
| heapIterator | |
| heapRecord | |
| HomePatchElem | |
| HybridBaseLB | |
| NamdHybridLB | |
| HydrogenGroupID | |
| idIndxStr | |
| ijpair | |
| ijpair_sortop_bit_reversed | |
| IMDEnergies | |
| IMDheader | |
| IMDOutput | |
| improper | |
| improper_params | |
| ImproperElem | |
| ImproperValue | |
| indexed_nbthole_pair | |
| indexed_table_pair | |
| indexed_vdw_pair | |
| msm::IndexRange | |
| msm::Grid< C1Matrix > | |
| msm::Grid< C1Vector > | |
| msm::Grid< Float > | |
| msm::Grid< msm::BlockDiagram > | |
| msm::Grid< Mtype > | |
| msm::Grid< Vtype > | |
| msm::Grid< T > | |
| msm::GridFixed< T, N > | |
| InfoRecord | |
| computeInfo | |
| patchInfo | |
| processorInfo | |
| Int2 | |
| Int3 | |
| OutputAtomRecord::integerVals | |
| InterpParams_t | |
| intpair | |
| IRSet | |
| LargeIRSet | |
| Iterator | |
| msm::Ivec | |
| Lattice | |
| LCPOAtom | |
| LCPONeighborList | |
| listNode | |
| LJTable | |
| LocalID | |
| LocalPmeInfo | |
| lphost | |
| LSSDataStr | |
| lssDistSort | |
| LSSSubsDat | |
| msm::Map | |
| Matrix4 | 4x4 matrix class with numerous operators, conversions, etc |
| Matrix4Symmetry | |
| Matrix4TMD | |
| maxHeap | |
| Measure | |
| meMMQMGrp | |
| memusageinit | |
| MGridforceParams | |
| MGridforceParamsList | |
| MigrationInfo | |
| minHeap | |
| minpoint | |
| MIStream | |
| MoaData | |
| Molecule | |
| MolInst | |
| MOStream | |
| MovePatch | |
| MsmBlockKernel< Vtype, Mtype > | |
| MsmBlockKernel< C1Vector, C1Matrix > | |
| MsmC1HermiteBlock | |
| MsmBlockKernel< Float, Float > | |
| MsmBlock | |
| MsmGridCutoffKernel< Vtype, Mtype > | |
| MsmGridCutoffKernel< C1Vector, C1Matrix > | |
| MsmC1HermiteGridCutoff | |
| MsmGridCutoffKernel< Float, Float > | |
| MsmGridCutoff | |
| NamdProfileEvent | |
| NamdState | |
| nbthole_pair_params | |
| nbthole_pair_value | |
| netint | Structure used to perform byte swapping operations |
| NL_Msm_t | |
| NodePmeInfo | |
| nodesort | |
| nonbonded | |
| NonbondedExclValue | |
| ObjectArena< Type > | |
| ObjectArena< char > | |
| ObjectArena< ComputeID > | |
| ObjectArena< int32 > | |
| ostream | |
| infostream | |
| ostringstream | |
| datastream | |
| ofstream_namd | |
| Output | |
| OutputAtomRecord | |
| OwnerBox< Owner, Data > | |
| OwnerBox< Patch, CompAtom > | |
| OwnerBox< Patch, GBReal > | |
| OwnerBox< Patch, int > | |
| OwnerBox< Patch, Real > | |
| OwnerBox< Patch, Results > | |
| Pairlists | |
| PairTable | |
| PAL | |
| Parameters | |
| parm | |
| ParseOptions | |
| Patch | |
| HomePatch | |
| ProxyPatch | |
| ComputeNonbondedCUDA::patch_record | |
| ComputeNonbondedMIC::patch_record | |
| patch_sortop_curve_a | |
| patch_sortop_curve_b | |
| patch_sortop_curve_c | |
| msm::PatchData | |
| patchDataStrc | |
| msm::PatchDiagram | |
| PatchElem | |
| PatchInfo | |
| PatchMap | |
| PatchPairRecord | |
| ComputeMap::PatchRec | |
| CudaComputeNonbonded::PatchRecord | |
| msm::PatchSend | |
| Rebalancer::pcpair | |
| PDB | |
| PDBData | |
| PDBAtom | |
| PDBAtomRecord | |
| PDBHetatm | |
| PDBUnknown | |
| pe_sortop_bit_reversed | |
| WorkDistrib::pe_sortop_compact | |
| pe_sortop_coord_x | |
| pe_sortop_coord_y | |
| WorkDistrib::pe_sortop_diffuse | |
| TopoManagerWrapper::pe_sortop_topo | |
| pid_sortop_reverse_priority | |
| PluginIOMgr | |
| PmeAtomStorage | |
| CpuPmeAtomStorage | |
| CudaPmeAtomStorage | |
| PmeGrid | |
| PmeKSpace | |
| PmeKSpaceCompute | |
| CudaPmeKSpaceCompute | |
| PmeParticle | |
| PmePencilInitMsgData | |
| PmeRealSpace | |
| PmeRealSpaceCompute | |
| CudaPmeRealSpaceCompute | |
| PmeTranspose | |
| CudaPmeTranspose | |
| pntChrgDist | |
| Pointer | |
| position_index | |
| PressureProfileReduction | |
| msm::PriorityQueue< T > | |
| ProxyElem | |
| ProxyListInfo | |
| ProxyTree | |
| proxyTreeNode | |
| ProxyUsage | |
| ProxyUsageKey | |
| QMAtomData | |
| QMForce | |
| qmSolvData | |
| Random | |
| HomePatch::RattleList | |
| RattleParam | |
| Rebalancer | |
| Alg7 | |
| AlgNbor | |
| AlgRecBisection | |
| RefineOnly | |
| RefineTorusLB | |
| TorusLB | |
| RecBisection | |
| RecipVirial_t | |
| ReductionSet | |
| ReductionSetData | |
| refSelStr | |
| ReplicaDcdAckMsg | |
| ReplicaDcdDataMsg | |
| ReplicaDcdInitMsg | |
| RequireReduction | |
| ResidueLookupElem | |
| ResizeArray< T > | |
| SortableResizeArray< Elem > | |
| SortedArray< Type > | |
| UniqueSortedArray< PatchElem > | |
| SortableResizeArray< HydrogenGroupID > | |
| ResizeArray< __sort_entry > | |
| ResizeArray< AngleElem > | |
| ResizeArray< AnisoElem > | |
| ResizeArray< AtomID > | |
| ResizeArray< BigReal > | |
| ResizeArray< bond > | |
| ResizeArray< BondElem > | |
| ResizeArray< char * > | |
| ResizeArray< char > | |
| ResizeArray< ClusterCoorMsg * > | |
| ResizeArray< ClusterSizeMsg * > | |
| ResizeArray< CollectionMaster::CollectVectorInstance * > | |
| ResizeArray< CollectionMgr::CollectVectorInstance * > | |
| ResizeArray< CollectProxyVectorInstance * > | |
| ResizeArray< CompAtom > | |
| ResizeArray< CompAtomExt > | |
| ResizeArray< ComputeGlobalResultsMsg * > | |
| ResizeArray< ComputeID * > | |
| ResizeArray< ComputeMap::ComputeData > | |
| ResizeArray< ComputeNonbondedCUDA::compute_record > | |
| ResizeArray< ComputeNonbondedCUDA::patch_record > | |
| ResizeArray< ComputeNonbondedMIC::compute_record > | |
| ResizeArray< ComputeNonbondedMIC::patch_record > | |
| ResizeArray< ComputePme * > | |
| ResizeArray< const char * > | |
| ResizeArray< const GenericAngle * > | |
| ResizeArray< const GenericAtom * > | |
| ResizeArray< const GenericBond * > | |
| ResizeArray< const GenericDihedral * > | |
| ResizeArray< const MolInst * > | |
| ResizeArray< const Real * > | |
| ResizeArray< CrosstermElem > | |
| ResizeArray< CudaAtom > | |
| ResizeArray< DihedralElem > | |
| ResizeArray< Elem > | |
| SortableResizeArray< Type > | |
| SortedArray< Compute * > | |
| SortedArray< ComputeQMPntChrg > | |
| SortedArray< Elem > | |
| UniqueSortedArray< Type > | |
| SortedArray< HomePatchElem > | |
| SortedArray< idIndxStr > | |
| SortedArray< int > | |
| SortedArray< LSSSubsDat > | |
| SortedArray< meMMQMGrp > | |
| SortedArray< MovePatch > | |
| ResizeArray< ExclElem > | |
| ResizeArray< float > | |
| ResizeArray< FloatVector > | |
| ResizeArray< Force > | |
| ResizeArray< FullAtom > | |
| ResizeArray< GBReal > | |
| ResizeArray< GenericMol * > | |
| ResizeArray< GlobalMaster * > | |
| ResizeArray< GroGaussPair > | |
| ResizeArray< GroLJPair > | |
| ResizeArray< GromacsPairElem > | |
| ResizeArray< ImproperElem > | |
| ResizeArray< InputAtom > | |
| ResizeArray< int > | |
| ResizeArray< int32 * > | |
| ResizeArray< intpair > | |
| ResizeArray< Lattice > | |
| ResizeArray< LSSDataMap > | |
| ResizeArray< LSSRefMap > | |
| ResizeArray< MigrationElem > | |
| ResizeArray< NodeID > | |
| ResizeArray< PatchID > | |
| ResizeArray< plint > | |
| ResizeArray< PmeGridMsg * > | |
| ResizeArray< PmeParticle > | |
| ResizeArray< Position > | |
| ResizeArray< Real > | |
| ResizeArray< ResizeArray > | |
| ResizeArray< SortedArray< int > > | |
| ResizeArray< TholeElem > | |
| ResizeArray< Type * > | |
| ResizeArray< unsigned char > | |
| ResizeArray< Vector > | |
| ResizeArray< void * > | |
| ResizeArrayIter< Type > | |
| ResizeArrayIter< PatchElem > | |
| ResizeArrayPrimIter< T > | |
| ResizeArrayRaw< Type > | |
| ResizeArrayRaw< Elem > | |
| Results | |
| ScriptTcl | |
| seg_resid | |
| Sequencer | |
| OutputAtomRecord::shortVals | |
| SimParameters | |
| sortop_base | |
| sortop_x | |
| sortop_y | |
| sortop_z | |
| sortop_bit_reversed | |
| StreamMessage | |
| stringbuf | |
| CkPrintf_stringbuf | |
| StringList | |
| SubmitReduction | |
| table_pair_params | |
| LJTable::TableEntry | |
| TaggedMsg | |
| Tensor | |
| thole | |
| TholeElem | |
| TileExcl | |
| TileList | |
| TileListStat | |
| TileListVirialEnergy | |
| TopoManagerWrapper | |
| Transform | |
| TransposeBatch< T > | |
| TransposeBatch< float2 > | |
| TuplePatchElem | |
| TupleSignature | |
| UniqueSet< Elem > | |
| UniqueSet< BOID > | |
| UniqueSet< BroadcastClientElem > | |
| UniqueSet< ClusterCoorElem > | |
| UniqueSet< ClusterElem > | |
| UniqueSet< Exclusion > | |
| UniqueSet< ProxyElem > | |
| UniqueSet< T > | |
| UniqueSet< TaggedMsg > | |
| UniqueSet< TuplePatchElem > | |
| UniqueSetIter< Type > | |
| UniqueSetRaw< Elem > | |
| UniqueSetRaw< BOID > | |
| UniqueSetRaw< BroadcastClientElem > | |
| UniqueSetRaw< ClusterCoorElem > | |
| UniqueSetRaw< ClusterElem > | |
| UniqueSetRaw< Exclusion > | |
| UniqueSetRaw< ProxyElem > | |
| UniqueSetRaw< T > | |
| UniqueSetRaw< TaggedMsg > | |
| UniqueSetRaw< TuplePatchElem > | |
| vdw_pair_params | |
| vdw_params | |
| vdw_val | |
| VDWTable | |
| vect | |
| Vector | |
| AlignVector | |
| zVector | |
| VirialEnergy | |
| vmdforce | |
| wkf_timer | |
| wkfmsgtimer | |
| WorkIndex | |
| string | |
| HashString | |
| T | |
| PmePencil< T > | |
1.8.5