|
NAMD
|
#include <ReadAmberParm.h>
Public Attributes | |
| bool | HasData = false |
| bool | IsCharmmFF |
| string | build_time |
| string | version_stamp |
| string | ititl |
| int | Natom |
| int | Ntypes |
| int | Nbonh |
| int | Mbona |
| int | Ntheth |
| int | Mtheta |
| int | Nphih |
| int | Mphia |
| int | Nhparm |
| int | Nparm |
| int | Nnb |
| int | Nres |
| int | Nbona |
| int | Ntheta |
| int | Nphia |
| int | Numbnd |
| int | Numang |
| int | Nptra |
| int | Natyp |
| int | Nphb |
| int | Ifpert |
| int | Nbper |
| int | Ngper |
| int | Ndper |
| int | Mbper |
| int | Mgper |
| int | Mdper |
| int | Ifbox |
| int | Nmxrs |
| int | Ifcap |
| int | Numextra |
| int | Ncopy |
| vector< string > | AtomNames |
| vector< _REAL > | Charges |
| vector< _REAL > | Masses |
| vector< int > | AtomNumbers |
| vector< int > | Iac |
| vector< int > | Iblo |
| vector< int > | Cno |
| vector< string > | ResNames |
| vector< int > | Ipres |
| vector< _REAL > | Rk |
| vector< _REAL > | Req |
| vector< _REAL > | Tk |
| vector< _REAL > | Teq |
| vector< _REAL > | Pk |
| vector< _REAL > | Pn |
| vector< _REAL > | Phase |
| vector< _REAL > | SceeScaleFactor |
| vector< _REAL > | ScnbScaleFactor |
| vector< _REAL > | Solty |
| vector< _REAL > | Cn1 |
| vector< _REAL > | Cn2 |
| vector< int > | BondHAt1 |
| vector< int > | BondHAt2 |
| vector< int > | BondHNum |
| vector< int > | BondAt1 |
| vector< int > | BondAt2 |
| vector< int > | BondNum |
| vector< int > | AngleHAt1 |
| vector< int > | AngleHAt2 |
| vector< int > | AngleHAt3 |
| vector< int > | AngleHNum |
| vector< int > | AngleAt1 |
| vector< int > | AngleAt2 |
| vector< int > | AngleAt3 |
| vector< int > | AngleNum |
| vector< int > | DihHAt1 |
| vector< int > | DihHAt2 |
| vector< int > | DihHAt3 |
| vector< int > | DihHAt4 |
| vector< int > | DihHNum |
| vector< int > | DihAt1 |
| vector< int > | DihAt2 |
| vector< int > | DihAt3 |
| vector< int > | DihAt4 |
| vector< int > | DihNum |
| vector< int > | ExclAt |
| vector< _REAL > | HB12 |
| vector< _REAL > | HB10 |
| vector< string > | AtomSym |
| vector< string > | AtomTree |
| vector< int > | TreeJoin |
| vector< int > | AtomRes |
| int | Iptres |
| int | Nspm |
| int | Nspsol |
| vector< int > | AtomsPerMolecule |
| vector< _REAL > | BoxDimensions |
| vector< int > | CapInfo |
| vector< _REAL > | CapInfo2 |
| vector< string > | RadiusSet |
| vector< _REAL > | Radii |
| vector< _REAL > | Screen |
| int | Ipol |
| vector< _REAL > | Polarizability |
| int | Nub |
| int | Nubtypes |
| vector< int > | UreyBradleyAt1 |
| vector< int > | UreyBradleyAt2 |
| vector< int > | UreyBradleyNum |
| vector< _REAL > | UreyBradleyForceConstants |
| vector< _REAL > | UreyBradleyEquilValues |
| int | Nimphi |
| vector< int > | ImproperAt1 |
| vector< int > | ImproperAt2 |
| vector< int > | ImproperAt3 |
| vector< int > | ImproperAt4 |
| vector< int > | ImproperNum |
| int | NimprTypes |
| vector< _REAL > | ImproperForceConstants |
| vector< _REAL > | ImproperPhases |
| vector< _REAL > | LJ14ACoefficients |
| vector< _REAL > | LJ14BCoefficients |
| bool | HasCMAP |
| int | CMAPTermCount |
| int | CMAPTypeCount |
| vector< int > | CMAPResolution |
| vector< vector< _REAL > > | CMAPParameter |
| vector< int > | CMAPIndex |
Definition at line 91 of file ReadAmberParm.h.
| vector<int> AmberParm7Reader::Ambertoppar::AngleAt1 |
Definition at line 162 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::AngleAt2 |
Definition at line 163 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::AngleAt3 |
Definition at line 164 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::AngleHAt1 |
Definition at line 158 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::AngleHAt2 |
Definition at line 159 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::AngleHAt3 |
Definition at line 160 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::AngleHNum |
Definition at line 161 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::AngleNum |
Definition at line 165 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<string> AmberParm7Reader::Ambertoppar::AtomNames |
Definition at line 131 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), PDB::PDB(), and AmberParm7Reader::read_amber_parm_stage2().
| vector<int> AmberParm7Reader::Ambertoppar::AtomNumbers |
Definition at line 134 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and AmberParm7Reader::read_amber_parm_stage2().
| vector<int> AmberParm7Reader::Ambertoppar::AtomRes |
Definition at line 182 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and PDB::PDB().
| vector<int> AmberParm7Reader::Ambertoppar::AtomsPerMolecule |
Definition at line 187 of file ReadAmberParm.h.
| vector<string> AmberParm7Reader::Ambertoppar::AtomSym |
Definition at line 179 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<string> AmberParm7Reader::Ambertoppar::AtomTree |
Definition at line 180 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::BondAt1 |
Definition at line 155 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::BondAt2 |
Definition at line 156 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::BondHAt1 |
Definition at line 152 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and AmberParm7Reader::read_amber_parm_stage2().
| vector<int> AmberParm7Reader::Ambertoppar::BondHAt2 |
Definition at line 153 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and AmberParm7Reader::read_amber_parm_stage2().
| vector<int> AmberParm7Reader::Ambertoppar::BondHNum |
Definition at line 154 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and AmberParm7Reader::read_amber_parm_stage2().
| vector<int> AmberParm7Reader::Ambertoppar::BondNum |
Definition at line 157 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<_REAL> AmberParm7Reader::Ambertoppar::BoxDimensions |
Definition at line 188 of file ReadAmberParm.h.
| string AmberParm7Reader::Ambertoppar::build_time |
Definition at line 95 of file ReadAmberParm.h.
| vector<int> AmberParm7Reader::Ambertoppar::CapInfo |
Definition at line 189 of file ReadAmberParm.h.
| vector<_REAL> AmberParm7Reader::Ambertoppar::CapInfo2 |
Definition at line 190 of file ReadAmberParm.h.
| vector<_REAL> AmberParm7Reader::Ambertoppar::Charges |
Definition at line 132 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and AmberParm7Reader::read_amber_parm_stage2().
| vector<int> AmberParm7Reader::Ambertoppar::CMAPIndex |
Definition at line 226 of file ReadAmberParm.h.
| vector<vector<_REAL> > AmberParm7Reader::Ambertoppar::CMAPParameter |
Definition at line 225 of file ReadAmberParm.h.
Referenced by Parameters::read_parm().
| vector<int> AmberParm7Reader::Ambertoppar::CMAPResolution |
Definition at line 224 of file ReadAmberParm.h.
Referenced by Parameters::read_parm().
| int AmberParm7Reader::Ambertoppar::CMAPTermCount |
Definition at line 222 of file ReadAmberParm.h.
| int AmberParm7Reader::Ambertoppar::CMAPTypeCount |
Definition at line 223 of file ReadAmberParm.h.
Referenced by Parameters::read_parm().
| vector<_REAL> AmberParm7Reader::Ambertoppar::Cn1 |
Definition at line 150 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| vector<_REAL> AmberParm7Reader::Ambertoppar::Cn2 |
Definition at line 151 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| vector<int> AmberParm7Reader::Ambertoppar::Cno |
Definition at line 137 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| vector<int> AmberParm7Reader::Ambertoppar::DihAt1 |
Definition at line 171 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::DihAt2 |
Definition at line 172 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::DihAt3 |
Definition at line 173 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::DihAt4 |
Definition at line 174 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::DihHAt1 |
Definition at line 166 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::DihHAt2 |
Definition at line 167 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::DihHAt3 |
Definition at line 168 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::DihHAt4 |
Definition at line 169 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::DihHNum |
Definition at line 170 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::DihNum |
Definition at line 175 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::ExclAt |
Definition at line 176 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| bool AmberParm7Reader::Ambertoppar::HasCMAP |
Definition at line 221 of file ReadAmberParm.h.
Referenced by Parameters::read_parm().
| bool AmberParm7Reader::Ambertoppar::HasData = false |
Definition at line 92 of file ReadAmberParm.h.
Referenced by NamdState::loadStructure(), Parameters::read_parm(), and AmberParm7Reader::readparm().
| vector<_REAL> AmberParm7Reader::Ambertoppar::HB10 |
Definition at line 178 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and Parameters::read_parm().
| vector<_REAL> AmberParm7Reader::Ambertoppar::HB12 |
Definition at line 177 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and Parameters::read_parm().
| vector<int> AmberParm7Reader::Ambertoppar::Iac |
Definition at line 135 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and AmberParm7Reader::read_amber_parm_stage2().
| vector<int> AmberParm7Reader::Ambertoppar::Iblo |
Definition at line 136 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and AmberParm7Reader::read_amber_parm_stage2().
| int AmberParm7Reader::Ambertoppar::Ifbox |
Definition at line 125 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Ifcap |
Definition at line 127 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Ifpert |
Definition at line 118 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::ImproperAt1 |
Definition at line 208 of file ReadAmberParm.h.
| vector<int> AmberParm7Reader::Ambertoppar::ImproperAt2 |
Definition at line 209 of file ReadAmberParm.h.
| vector<int> AmberParm7Reader::Ambertoppar::ImproperAt3 |
Definition at line 210 of file ReadAmberParm.h.
| vector<int> AmberParm7Reader::Ambertoppar::ImproperAt4 |
Definition at line 211 of file ReadAmberParm.h.
| vector<_REAL> AmberParm7Reader::Ambertoppar::ImproperForceConstants |
Definition at line 214 of file ReadAmberParm.h.
| vector<int> AmberParm7Reader::Ambertoppar::ImproperNum |
Definition at line 212 of file ReadAmberParm.h.
| vector<_REAL> AmberParm7Reader::Ambertoppar::ImproperPhases |
Definition at line 215 of file ReadAmberParm.h.
| int AmberParm7Reader::Ambertoppar::Ipol |
Definition at line 195 of file ReadAmberParm.h.
| vector<int> AmberParm7Reader::Ambertoppar::Ipres |
Definition at line 139 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and AmberParm7Reader::read_amber_parm_stage2().
| int AmberParm7Reader::Ambertoppar::Iptres |
Definition at line 184 of file ReadAmberParm.h.
| bool AmberParm7Reader::Ambertoppar::IsCharmmFF |
Definition at line 93 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| string AmberParm7Reader::Ambertoppar::ititl |
Definition at line 97 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::read_amber_parm_stage2().
| vector<_REAL> AmberParm7Reader::Ambertoppar::LJ14ACoefficients |
Definition at line 217 of file ReadAmberParm.h.
| vector<_REAL> AmberParm7Reader::Ambertoppar::LJ14BCoefficients |
Definition at line 218 of file ReadAmberParm.h.
| vector<_REAL> AmberParm7Reader::Ambertoppar::Masses |
Definition at line 133 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and AmberParm7Reader::read_amber_parm_stage2().
| int AmberParm7Reader::Ambertoppar::Mbona |
Definition at line 101 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Mbper |
Definition at line 122 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Mdper |
Definition at line 124 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Mgper |
Definition at line 123 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Mphia |
Definition at line 105 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Mtheta |
Definition at line 103 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Natom |
Definition at line 98 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), PDB::PDB(), and AmberParm7Reader::read_amber_parm_stage2().
| int AmberParm7Reader::Ambertoppar::Natyp |
Definition at line 116 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Nbona |
Definition at line 110 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Nbonh |
Definition at line 100 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and AmberParm7Reader::read_amber_parm_stage2().
| int AmberParm7Reader::Ambertoppar::Nbper |
Definition at line 119 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Ncopy |
Definition at line 129 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Ndper |
Definition at line 121 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Ngper |
Definition at line 120 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Nhparm |
Definition at line 106 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Nimphi |
Definition at line 207 of file ReadAmberParm.h.
| int AmberParm7Reader::Ambertoppar::NimprTypes |
Definition at line 213 of file ReadAmberParm.h.
| int AmberParm7Reader::Ambertoppar::Nmxrs |
Definition at line 126 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Nnb |
Definition at line 108 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Nparm |
Definition at line 107 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Nphb |
Definition at line 117 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Nphia |
Definition at line 112 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Nphih |
Definition at line 104 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Nptra |
Definition at line 115 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| int AmberParm7Reader::Ambertoppar::Nres |
Definition at line 109 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and AmberParm7Reader::read_amber_parm_stage2().
| int AmberParm7Reader::Ambertoppar::Nspm |
Definition at line 185 of file ReadAmberParm.h.
| int AmberParm7Reader::Ambertoppar::Nspsol |
Definition at line 186 of file ReadAmberParm.h.
| int AmberParm7Reader::Ambertoppar::Ntheta |
Definition at line 111 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Ntheth |
Definition at line 102 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| int AmberParm7Reader::Ambertoppar::Ntypes |
Definition at line 99 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| int AmberParm7Reader::Ambertoppar::Nub |
Definition at line 199 of file ReadAmberParm.h.
| int AmberParm7Reader::Ambertoppar::Nubtypes |
Definition at line 200 of file ReadAmberParm.h.
| int AmberParm7Reader::Ambertoppar::Numang |
Definition at line 114 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| int AmberParm7Reader::Ambertoppar::Numbnd |
Definition at line 113 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| int AmberParm7Reader::Ambertoppar::Numextra |
Definition at line 128 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<_REAL> AmberParm7Reader::Ambertoppar::Phase |
Definition at line 146 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| vector<_REAL> AmberParm7Reader::Ambertoppar::Pk |
Definition at line 144 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| vector<_REAL> AmberParm7Reader::Ambertoppar::Pn |
Definition at line 145 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| vector<_REAL> AmberParm7Reader::Ambertoppar::Polarizability |
Definition at line 196 of file ReadAmberParm.h.
| vector<_REAL> AmberParm7Reader::Ambertoppar::Radii |
Definition at line 192 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<string> AmberParm7Reader::Ambertoppar::RadiusSet |
Definition at line 191 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<_REAL> AmberParm7Reader::Ambertoppar::Req |
Definition at line 141 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| vector<string> AmberParm7Reader::Ambertoppar::ResNames |
Definition at line 138 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), PDB::PDB(), and AmberParm7Reader::read_amber_parm_stage2().
| vector<_REAL> AmberParm7Reader::Ambertoppar::Rk |
Definition at line 140 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| vector<_REAL> AmberParm7Reader::Ambertoppar::SceeScaleFactor |
Definition at line 147 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and AmberParm7Reader::read_amber_parm_stage2().
| vector<_REAL> AmberParm7Reader::Ambertoppar::ScnbScaleFactor |
Definition at line 148 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), and AmberParm7Reader::read_amber_parm_stage2().
| vector<_REAL> AmberParm7Reader::Ambertoppar::Screen |
Definition at line 193 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<_REAL> AmberParm7Reader::Ambertoppar::Solty |
Definition at line 149 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<_REAL> AmberParm7Reader::Ambertoppar::Teq |
Definition at line 143 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| vector<_REAL> AmberParm7Reader::Ambertoppar::Tk |
Definition at line 142 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer(), AmberParm7Reader::read_amber_parm_stage2(), and Parameters::read_parm().
| vector<int> AmberParm7Reader::Ambertoppar::TreeJoin |
Definition at line 181 of file ReadAmberParm.h.
Referenced by AmberParm7Reader::parse_pointer().
| vector<int> AmberParm7Reader::Ambertoppar::UreyBradleyAt1 |
Definition at line 201 of file ReadAmberParm.h.
| vector<int> AmberParm7Reader::Ambertoppar::UreyBradleyAt2 |
Definition at line 202 of file ReadAmberParm.h.
| vector<_REAL> AmberParm7Reader::Ambertoppar::UreyBradleyEquilValues |
Definition at line 205 of file ReadAmberParm.h.
| vector<_REAL> AmberParm7Reader::Ambertoppar::UreyBradleyForceConstants |
Definition at line 204 of file ReadAmberParm.h.
| vector<int> AmberParm7Reader::Ambertoppar::UreyBradleyNum |
Definition at line 203 of file ReadAmberParm.h.
| string AmberParm7Reader::Ambertoppar::version_stamp |
Definition at line 96 of file ReadAmberParm.h.
1.8.5