Computational Biophysics Workshop - Urbana, Nov. 29 - Dec. 3, 2010
Lectures
- Mon, 11/29: Introduction to Protein Structure and
Dynamics, K. Schulten
- Opening Remarks (pdf)
- Structure and Sequence Analysis with VMD (pdf)
- Introduction to Molecular Dynamics with NAMD (pdf)
- Tue, 11/30: Statistical Mechanics of Proteins, K. Schulten
- Analysis of Equilibrium and Non-equilibrium
Properties of Proteins with NAMD (pdf)
- Exemplary Applications of VMD / NAMD in Modern Research (pdf)
- Thu, 12/2: Parameters for Classical Force Fields, E. Tajkhorshid
- Introduction to Topology, Parameters, and Structure
Files (pdf)
- Examples and Applications (pdf)
- Fri, 12/3: Simulating Membrane Channels, E. Tajkhorshid
- Introduction and Examples (pdf)
- Nanotubes (pdf)