• Home

• Announcement

• Program

• Agenda

• Instructors

• Evaluation

Computational Biophysics Workshop - Urbana, July 18-20, 2018

Agenda

Hands-on tutorials using the GPU-based cell simulations software Lattice Microbes(LM) will all be run on the cloud using Amazon Web Services (AWS)

These topics will be covered:

• Principles of cellular networks: genetic information processing, metabolism, and cell growth. Minimal Cell as platform for understanding rules of life
• Building a cell from experimental imaging data: EXP-2-LM Jupyter Python Notebooks
• Review of techniques to model biochemical kinetics in well-stirred environments
• Spatially resolved stochastic dynamics of cellular processes using reaction-diffusion master equations (RDME) description
• Multi-scale and hybrid deterministic-stochastic simulations of cellular processes using Lattice Microbes software
• Using VMD and EXP-2-LM to visualize bacterial and eukaryotic cells
• 3D experimental data sets to visualize time-dependent variations in stem cells