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Computational Biophysics Workshop - Pittsburgh, May 19-23, 2014

• Mon, May 19: Introduction to Protein Structure and Dynamics - Klaus Schulten
  • Structure and Sequence Analysis with VMD (pdf) (video1, video2)
    
  • Introduction to Molecular Dynamics with NAMD (pdf) (video)
    
    
• Tue, May 20: Statistical Mechanics of Proteins - Klaus Schulten
  
• Analysis of Equilibrium and Non-equilibrium Properties of Proteins with NAMD (pdf)
• Applications of VMD / NAMD in Modern Research (pdf) (video)
  
  
• Wed, May 21: Computational Nano-Bio - Alek Aksimentiev
  
  • Introduction to Modeling and Simulations of Nucleic Acid Systems (pdf) (video)
  • Modeling the Interface Between Biological and Synthetic Materials (pdf) (video)
    


• Thu, May 22: Collective Dynamics of Proteins Using Elastic Network Models - Ivet Bahar, Tim Lezon and Chakra Chennubhotla
  
  • Elastic Network Models (ENMs) and Collective Motions of Biomolecular Systems using ProDy (pdf) (video)
  • ProDy Overview and Applications (pdf)
    
  
  
• Fri, May 23: Druggability Simulations and Sequence Evolution Patterns - Ivet Bahar, Indira Shrivastava, and Chakra Chennubhotla
  
  • Druggability Method (pdf) (video)
  • Comparative Analysis of Sequence Patterns and Structural Dynamics for Families/Ensembles of Proteins (pdf) (video)