Computational Biophysics Workshop - Okazaki - Sep. 9-11, 2015
Hands-On Workshop on Computational Biophysics Using NAMD and VMD
Tutorials
Below is a list of the tutorials used at the summer school.
Please
click here to see a page with the updated versions of these tutorials.
- Using VMD
An introduction to VMD and its capabilities
- NAMD Tutorial
An introduction to NAMD and its capabilities
- A Tutorial on Alchemical Free Energy Perturbation
Calculations in NAMD
Discusses setting up the system and calculations needed for
free energy calculations of alchemical transformations
within NAMD
