Hands-On Workshop on Computational Biophysics Using NAMD and VMD


    Below is a list of the tutorials used at the summer school. Please click here to see a page with the updated versions of these tutorials.

  • Using VMD
    An introduction to VMD and its capabilities

  • NAMD Tutorial
    An introduction to NAMD and its capabilities

  • A Tutorial on Alchemical Free Energy Perturbation Calculations in NAMD
    Discusses setting up the system and calculations needed for free energy calculations of alchemical transformations within NAMD