Computational Biophysics Workshop - Bethesda, Nov. 5-7, 2007
Program
Location:
-
Lectures: Building 12A, Room B51
Mon, 11/5: Introduction to Protein Structure and Dynamics
| 09:00-09:10 | Opening Remarks - E. Tajkhorshid |
| 09:10-10:40 | Structure and Sequence Analysis with VMD - E. Tajkhorshid |
| Coffee Break | |
| 11:00-12:10 | VMD for Structure Building and Dynamics Analysis - E. Tajkhorshid |
| 12:10-12:30 | Q & A |
| Lunch Break | |
| 14:00-15:30 | VMD Tutorial I |
| Coffee Break | |
| 16:00-17:30 | VMD Tutorial II |
Tue, 11/6: Statistical Mechanics of Proteins
| 09:00-10:30 | Molecular Dynamics with NAMD I - K. Schulten |
| Coffee Break | |
| 10:50-12:10 | Molecular Dynamics with NAMD II - K. Schulten |
| 12:10-12:30 |
Q & A Group photo |
| Lunch Break | |
| 14:00-16:00 | NAMD Tutorial I |
| Coffee Break | |
| 16:15-18:00 | NAMD Tutorial II |
Wed, 11/7: Parameters for Classical Force Fields
| 09:00-10:30 | Molecular Dynamics of Cellular Processes I - E. Tajkhorshid |
| Coffee Break | |
| 10:50-12:10 | Molecular Dynamics of Cellular Processes II - K. Schulten |
| 12:10-12:30 | Q & A |
| Lunch Break | |
| 14:00-16:30 | Parameterizing a Novel Residue, Topology File Tutorial |
| Coffee Break | |
| 16:45-18:00 | Nanotube Tutorial / Stretching Deca-alanine Tutorial |
Workshop supported in part by NIH P41-RR005969 "Resource for Macromolecular Modeling and Bioinformatics".