ECE 498AL: Programming Massively Parallel Processors

CUDA biomolecular example codes, and "lessons learned" lecture

• Guest lecture materials: cionize, VMD case studies
• Coulombic potential grid example codes

ECE 498AL CUDA Acceleration Project Reference Materials and Sample Code

• Molecular Surface Computation
• Lattice Cutoff Computation for Multilevel Summation
• Grid Generation and Matching for Small Molecule Docking
• Monte Carlo Sampling of Protein Conformations
• Ray Tracing Algorithms

ECE 498 home page

• ECE 498 class home page