Here you can find some parameters and topology definitions for nonstandard molecules.

Please...

• add your own contributions here!
• cite the contributors if references are given.
• don't mess up existing entries, but post your own data or contact the original contributor for suggestions.

Topology

ArachidonicAcidTop: topopolgy definitions for arachidonic acid (CHARMM format)

PalmitoylCysteinTop: topopolgy definitions for palmitoyl-cystein (CHARMM format)

RetinalTop: topopolgy definitions for retinal bound via protonated Schiff-base link to lysine. Used in rhodopsin. (CHARMM format)

Parameters

ArachidonicAcidPar: parameters for arachidonic acid (CHARMM format)

PalmitoylCysteinPar: parameters for palmitoyl-cystein (CHARMM format)

RetinalPar: parameters for retinal bound via protonated Schiff-base link to lysine. Used in rhodopsin. (CHARMM format)