Paper Citing NAMD - Abstract
Aguilella-Arzo, Marcel; Calero, Carles; Faraudo, Jordi
Simulation of electrokinetics at the nanoscale: inversion of selectivity in a bio-nanochannel
SOFT MATTER, 6:6079-6082, 2010
Here we show, by using full atomic molecular dynamics simulations, that electrostatic correlations typical of multivalent ions can reverse the selectivity of a biological nanochannel. We analyze the ionic transport and partition across the channel in the case of monovalent, divalent and a mixture of ions. Our results provide a physical mechanism for a new, experimentally observed phenomenon, namely the inversion of the selectivity of a bacterial porin (the E. Coli OmpF) in presence of multivalent cations. Also, the differences and similarities between this phenomenon and other nano and micro-scale electrokinetic effects are briefly discussed.
