Molecular Dynamics Flexible Fitting
Documentation
MDFF tutorial (html)
(pdf,
1.3M)
(required tutorial files [.tar.gz, 98.2M] [.zip, 98.2M], individual files)
The MDFF tutorial has been updated and now includes sections on MDFF with explicit solvent, with domain restraints and with symmetry restraints.
Structure Check tutorial
(html)
(pdf,
720k)
(required tutorial files [.tar.gz, 762k] [.zip, 753k], individual files)
This tutorial described VMD plugins that can be used to identify, visualize, fix, and prevent certain structure errors (read more).
For other VMD and NAMD tutorials, click here.
