Documentation

MDFF and xMDFF tutorial (html) (pdf, 3.1M) (required tutorial files [.tar.gz, 195M] [.zip, 195M], individual files)
The MDFF tutorial includes sections on MDFF in vacuum and with explicit solvent, with domain restraints, with symmetry restraints, xMDFF, the MDFF GUI (and interactive MDFF), and Timeline analysis.

Structure Check tutorial (html) (pdf, 720k) (required tutorial files [.tar.gz, 762k] [.zip, 753k], individual files)
This tutorial described VMD plugins that can be used to identify, visualize, fix, and prevent certain structure errors (read more).

Rosetta/MDFF (html) (pdf, 2.7M) (required tutorial files [.tar.gz, 221M] [.zip, 221M], individual files)
Interactive Model Building with Rosetta and MDFF.

VMD mdff plugin documentation (html)
Documentation page containing usage information for the mdff plugin and MDFF GUI in VMD.

Interactive MDFF Online Tutorial (video) (required tutorial files [.tar.gz, 2.9M] [.zip, 536k], individual files).
This online tutorial shows a step-by-step guide to performing an interactive MDFF calculation, without using the MDFF GUI. For information on running interactive MDFF through the newer MDFF GUI, please see the MDFF tutorial.

For other VMD and NAMD tutorials, click here.

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