Structural Biology Software Database
Structural Biology Software Database

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Category: Molecular Biology Experimental Tools (4 entries)

This is a collection of tools for molecular biology experiments e.g. PCR, 2D NOE.


Amplify is a free Macintosh program for simulating and testing polymerase chain reactions (PCRs). It can also be used as a tool for designing primers by evaluating candidates.
View Application Entry for Amplify


GPRIME contains two series of programs to help with the design of PCR primers for an aligned group of related nucleotide sequences. It is available for DOS 3.3 or Windows.
View Application Entry for GPRIME

MARDIGRAS (Matrix Analysis of Relaxation for DIscerning the Geometry of an Aqueous Structure)

MARDIGRAS is a FORTRAN program for calculating proton-proton distances from cross-peak intensities measured from a 2D NOE experiment.
View Application Entry for MARDIGRAS (Matrix Analysis of Relaxation for DIscerning the Geometry of an Aqueous Structure)


Melanie 3 is the all-in-one solution for analyzing, annotating and querying your 2D gel samples. This easy to use package offers sophisticated analysis for both single and large-scale 2D comparison studies. Its design and functions address the needs of both experts and beginners and includes both automatic as well as interactive gel analysis. Melanie offers sophisticated state-of-the-art analysis for the identification, quantification and matching of gels. Combined with comprehensive annotation possibilities, advanced statistical and classification capabilities, as well as a versatile query engine and reporting functions, Melanie 3 marks the arrival of a new generation of 2D gel analysis software.
View Application Entry for Melanie

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