Computational Biophysics Workshop - Bremen, Jun 16-20, 2014
Lectures
- Mon, 6/16: Introduction to Protein Structure and Dynamics - Klaus Schulten
- Opening Remarks (pdf)
- Structure and Sequence Analysis with VMD (pdf)
- Introduction to Molecular Dynamics with NAMD (pdf)
- Tue, 6/17: Introduction to Protein Structure and Dynamics - Klaus Schulten
- Analysis of Equilibrium and Non-equilibrium Properties of Proteins with NAMD (pdf)
- Applications of VMD / NAMD in Modern Research (pdf)
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Wed, 6/18: Statistical Mechanics of Proteins - Klaus Schulten, Chris Chipot
- Modeling and Sequence Analysis of the Water Channel Aquaporin (K. Schulten) (pdf)
- Introduction to Free-energy Calculations (C. Chipot) (pdf)
- Thu, 6/19: Parameters for Classical Force Fields - Emad Tajkhorshid
- Introduction to Topology, Parameters, and Structure Files (pdf)
- Examples and Applications (pdf)
- Fri, 6/20: Simulating Membrane Channels - Emad Tajkhorshid and Ulrich Kleinekathoefer
- Membrane Simulation with NAMD (E. Tajkhorshid) (pdf)
- Transport through (biological) Nanopores (U. Kleinekatoefer) (pdf)