In order to work with RNA, Dowser needs additional dictionary definitions. Following the same approach used by Cameron Mura for DNA, we developed corresponding RNA dictionary entries that can be found below:

Details about how the dictionary has been developed can be found on the above files.

Please cite the following reference in any publication in which the Dowser RNA parameters were used:

Publications Database Regulation of the protein-conducting channel by a bound ribosome. James Gumbart, Leonardo G. Trabuco, Eduard Schreiner, Elizabeth Villa, and Klaus Schulten. Structure, 17:1453-1464, 2009.


Leonardo Trabuco and Emma Falck.