- d -
- d00
: CrosstermData
- d01
: CrosstermData
- d10
: CrosstermData
- d11
: CrosstermData
- d_dim
: TopoManagerWrapper
- d_mod
: TopoManagerWrapper
- d_rot
: TopoManagerWrapper
- daCutoffDist
: SimParameters
- daOffDist
: SimParameters
- daOnDist
: SimParameters
- data
: CollectVectorVarMsg
, PAL
, PmeStartMsg
, CollectionMgr::CollectVectorInstance
, PmeBlockMsg
, PmeRealSpaceCompute
, CollectionMgr::CollectVectorSequence
, Pointer
, ConstPointer
, PmePencilInitMsg
, ReductionSubmitMsg
, ReductionSetData
, PmePencil< T >
, FinishWorkMsg
, QMGrpCalcMsg
, Array< Elem, Size >
, StringList
, ConfigList::ConfigListNode
, CollectVectorMsg
, DeviceBuffer
, DeviceDataMsg
, CollectionMaster::CollectVectorInstance
, DataMessage
, ReplicaDcdInitMsg
, CollectionMaster::CollectVectorSequence
, ReplicaDcdDataMsg
, StreamMessage
, DataStreamMsg
, CollectProxyVectorInstance
, CollectProxyVectorSequence
- data_in
: TransposeBatch< T >
- data_out
: TransposeBatch< T >
- data_read
: parm
- data_size
: CollectVectorMsg
- dataDst
: FFTCompute
- dataDstAllocated
: FFTCompute
- dataDstSize
: FFTCompute
- dataExchanger
: BOCgroup
- DataExchanger_SDAG_CODE
: DataExchanger
- dataQueue
: ReductionSet
- dataSize
: PmeStartMsg
, PmeBlockMsg
, PmeRealSpaceCompute
, PmeTranspose
, ReductionRegisterMsg
, ReductionSubmitMsg
, ReductionSet
- dataSrc
: FFTCompute
- dataSrcAllocated
: FFTCompute
- dataSrcSize
: FFTCompute
- dcdFilename
: SimParameters
- dcdFrequency
: SimParameters
- dcdIndex
: ReplicaDcdDataMsg
, ReplicaDcdInitMsg
- dcdUnitCell
: SimParameters
- dE
: Controller
- dEdaSum
: ComputeNonbondedCUDA::patch_record
, ComputeNonbondedMIC::patch_record
, GBISParamStruct
, GBISResults< 2 >
, CudaComputeNonbonded::PatchRecord
, Patch
, ProxyGBISP2ResultMsg
- dEdaSumBox
: ComputeNonbondedCUDA::patch_record
, ComputeNonbondedMIC::patch_record
, ComputeNonbondedPair
, ComputeNonbondedSelf
, CudaComputeNonbonded::PatchRecord
, Patch
- dEdaSumComputeList
: Patch
- dEdaSumH
: ComputeNonbondedCUDA
, ComputeNonbondedMIC
- dEdaSumH_size
: ComputeNonbondedCUDA
- dEdaSumLen
: ProxyGBISP2ResultMsg
- default_border
: GridforceFullMainGrid
- default_coor
: PDBAtom
- default_occupancy
: PDBAtom
- default_residueseq
: PDBAtom
- default_serial
: PDBAtom
- default_temperaturefactor
: PDBAtom
- deleted
: heapRecord
- delta
: GBISParamStruct
, four_body_consts
, CudaDihedralValue
- DELTA
: ReplicaDcdDataMsg
- density
: NL_Msm_t
- destElem
: PmeGridMsg
, PmeTransMsg
, PmeUntransMsg
- destNodeID
: MigrationInfo
- destPatchID
: MigrateAtomsMsg
, MigrateAtomsCombinedMsg
, MigrationInfo
- destPe
: ProxyGBISP1ResultMsg
, ProxyGBISP2DataMsg
, ProxyGBISP2ResultMsg
, ProxyGBISP3DataMsg
- dev
: RecvDeviceMsg
- device
: PmeStartMsg
- device_egrids
: NL_Msm_t
- device_qgrids
: NL_Msm_t
- deviceID
: ComputeNonbondedCUDA
, InitDeviceMsg2
, DeviceBuffer
- devicelist
: cuda_args_t
- deviceProxy
: InitDeviceMsg
- devicesperreplica
: cuda_args_t
- dG
: Controller
- dhaCutoffAngle
: SimParameters
- dhaOffAngle
: SimParameters
- dhaOnAngle
: SimParameters
- dHdrPrefix
: ProxyGBISP3DataMsg
, ComputeNonbondedCUDA::patch_record
, ComputeNonbondedMIC::patch_record
, GBISParamStruct
, CudaComputeNonbonded::PatchRecord
, Patch
- dHdrPrefixBox
: ComputeNonbondedCUDA::patch_record
, ComputeNonbondedMIC::patch_record
, ComputeNonbondedPair
, ComputeNonbondedSelf
, CudaComputeNonbonded::PatchRecord
, Patch
- dHdrPrefixComputeList
: Patch
- dHdrPrefixI
: GBISInput< 3 >
- dHdrPrefixJ
: GBISInput< 3 >
- dHdrPrefixLen
: ProxyGBISP3DataMsg
- dielectric
: SimParameters
- dielectric_1
: ComputeNonbondedUtil
- DihAt1
: parm
, AmberParm7Reader::Ambertoppar
- DihAt2
: parm
, AmberParm7Reader::Ambertoppar
- DihAt3
: parm
, AmberParm7Reader::Ambertoppar
- DihAt4
: parm
, AmberParm7Reader::Ambertoppar
- dihedral
: lphost
- dihedral_array
: Parameters
- dihedral_type
: dihedral
- dihedralCnt
: AtomSignature
- dihedralOn
: SimParameters
- dihedralSigIndices
: AtomSigInfo
- dihedralSigs
: AtomSignature
- DihHAt1
: AmberParm7Reader::Ambertoppar
, parm
- DihHAt2
: parm
, AmberParm7Reader::Ambertoppar
- DihHAt3
: AmberParm7Reader::Ambertoppar
, parm
- DihHAt4
: parm
, AmberParm7Reader::Ambertoppar
- DihHNum
: AmberParm7Reader::Ambertoppar
, parm
- DihNum
: parm
, AmberParm7Reader::Ambertoppar
- dim2
: PmeGrid
- dim3
: PmeGrid
- dimension
: crossterm_params
- disableTopology
: SimParameters
- dispersion
: ComputeMsmMgr
- dist
: QMAtomData
, ComputeQMPntChrg
, pntChrgDist
, lssDistSort
- distance
: lphost
, bond_params
- distAttExp
: SimParameters
- distop
: cr_sortop_reverse_priority
- distRepExp
: SimParameters
- dk
: GridforceLiteGrid
, GridforceFullBaseGrid
- dk_hi
: GridforceFullBaseGrid::GridIndices
- dk_lo
: GridforceFullBaseGrid::GridIndices
- dk_nopad
: GridforceFullBaseGrid
- doEnergy
: Flags
, PmePencilXYZ
, ComputeNonbondedCUDA
, GBISParamStruct
, PmeRunMsg
, PmeBlockMsg
, PmePencilX
, PmePencilY
, PmePencilXY
, PmePencilZ
, PmeAtomMsg
, PmeAtomPencilMsg
, ComputeNonbondedMIC
- doFullElectrostatics
: GBISParamStruct
, Flags
- doGBIS
: Flags
, GBISParamStruct
- doKineticEnergy
: Sequencer
- doLCPO
: Flags
- doLoadTuples
: ComputeHomeTuples< T, S, P >
- doLoweAndersen
: nonbonded
, Flags
- doMolly
: Flags
- doMomenta
: Sequencer
- doNonbonded
: Flags
- doSlow
: GBISCoordMsg
, ComputeNonbondedMIC
, ComputeNonbondedCUDA
- doSmoothing
: GBISParamStruct
- doVirial
: PmeAtomMsg
, Flags
, PmePencilZ
, PmePencilXYZ
, PmePencilY
, PmeRunMsg
, PmeBlockMsg
, PmeAtomPencilMsg
, PmePencilXY
, PmePencilX
- drudeBondConst
: SimParameters
- drudeBondLen
: SimParameters
- drudeBondTemp
: Controller
- drudeBondTempAvg
: Controller
- drudeDamping
: SimParameters
- drudeHardWallOn
: SimParameters
- drudeNbthole
: ComputeNonbondedUtil
- drudeNbtholeCut
: SimParameters
- drudeOn
: SimParameters
- drudeTemp
: SimParameters
- dsq
: RattleParam
- dstpe
: ExchangeAtomsReqMsg
- dsum
: ClusterCoorMsg
, ClusterCoorElem
- dt
: SimParameters
- dthetax
: gather_t< T, order >
- dthetay
: gather_t< T, order >
- dthetaz
: gather_t< T, order >
- dudx
: minpoint