NAMD File List

Here is a list of all files with brief descriptions:
Alg7.h [code]
AlgNbor.C [code]
AlgNbor.h [code]
AlgRecBisection.C [code]
AlgRecBisection.h [code]
AlgSeven.C [code]
Array.h [code]
AtomMap.C [code]
AtomMap.h [code]
BackEnd.C [code]
BackEnd.h [code]
BOCgroup.h [code]
Box.h [code]
BroadcastClient.C [code]
BroadcastClient.h [code]
BroadcastMgr.C [code]
BroadcastMgr.h [code]
BroadcastObject.h [code]
Broadcasts.h [code]
ccsinterface.C [code]
ccsinterface.h [code]
CollectionMaster.C [code]
CollectionMaster.h [code]
CollectionMgr.C [code]
CollectionMgr.h [code]
colvarproxy_namd.C [code]
colvarproxy_namd.h [code]
colvarproxy_namd_version.h [code]
common.C [code]
common.h [code]
Communicate.C [code]
Communicate.h [code]
CompressPsf.C [code]
CompressPsf.h [code]
Compute.C [code]
Compute.h [code]
ComputeAngles.C [code]
ComputeAngles.h [code]
ComputeAngles.inl [code]
ComputeAniso.C [code]
ComputeAniso.h [code]
ComputeAniso.inl [code]
ComputeBondedCUDA.C [code]
ComputeBondedCUDA.h [code]
ComputeBondedCUDAKernel.cu [code]
ComputeBondedCUDAKernel.h [code]
ComputeBonds.C [code]
ComputeBonds.h [code]
ComputeBonds.inl [code]
ComputeConsForce.C [code]
ComputeConsForce.h [code]
ComputeConsForceMsgs.C [code]
ComputeConsForceMsgs.h [code]
ComputeCrossterms.C [code]
ComputeCrossterms.h [code]
ComputeCUDAMgr.C [code]
ComputeCUDAMgr.h [code]
ComputeCylindricalBC.C [code]
ComputeCylindricalBC.h [code]
ComputeDihedrals.C [code]
ComputeDihedrals.h [code]
ComputeDihedrals.inl [code]
ComputeDPME.C [code]
ComputeDPME.h [code]
ComputeDPMEMsgs.C [code]
ComputeDPMEMsgs.h [code]
ComputeDPMTA.C [code]
ComputeDPMTA.h [code]
ComputeEField.C [code]
ComputeEField.h [code]
ComputeEwald.C [code]
ComputeEwald.h [code]
ComputeExt.C [code]
ComputeExt.h [code]
ComputeFmmSerial.C [code]
ComputeFmmSerial.h [code]
ComputeFullDirect.C [code]
ComputeFullDirect.h [code]
ComputeFullDirectBase.h [code]
ComputeGBIS.C [code]
ComputeGBIS.inl [code]
ComputeGBISCUDAKernel.h [code]
ComputeGBISser.C [code]
ComputeGBISser.h [code]
ComputeGlobal.C [code]
ComputeGlobal.h [code]
ComputeGlobalMsgs.C [code]
ComputeGlobalMsgs.h [code]
ComputeGridForce.C [code]
ComputeGridForce.h [code]
ComputeGromacsPair.C [code]
ComputeGromacsPair.h [code]
ComputeGromacsPair.inl [code]
ComputeHomePatch.C [code]
ComputeHomePatch.h [code]
ComputeHomePatches.C [code]
ComputeHomePatches.h [code]
ComputeHomeTuples.h [code]
ComputeImpropers.C [code]
ComputeImpropers.h [code]
ComputeLCPO.C [code]
ComputeLCPO.h [code]
ComputeMap.C [code]
ComputeMap.h [code]
ComputeMgr.C [code]
ComputeMgr.h [code]
ComputeMoa.C [code]
ComputeMoa.h [code]
ComputeMsm.C [code]
ComputeMsm.h [code]
ComputeMsmMsa.C [code]
ComputeMsmMsa.h [code]
ComputeMsmSerial.C [code]
ComputeMsmSerial.h [code]
ComputeNonbondedBase.h [code]
ComputeNonbondedBase2.h [code]
ComputeNonbondedBase2KNL.h [code]
ComputeNonbondedCUDA.C [code]
ComputeNonbondedCUDA.h [code]
ComputeNonbondedCUDAExcl.C [code]
ComputeNonbondedCUDAExcl.h [code]
ComputeNonbondedCUDAExcl.inl [code]
ComputeNonbondedCUDAKernel.cu [code]
ComputeNonbondedCUDAKernel.h [code]
ComputeNonbondedCUDAKernelBase.h [code]
ComputeNonbondedFEP.C [code]
ComputeNonbondedGo.C [code]
ComputeNonbondedInl.h [code]
ComputeNonbondedLES.C [code]
ComputeNonbondedMIC.C [code]
ComputeNonbondedMIC.h [code]
ComputeNonbondedMICKernel.C [code]
ComputeNonbondedMICKernel.h [code]
ComputeNonbondedMICKernelBase.h [code]
ComputeNonbondedMICKernelBase2.h [code]
ComputeNonbondedMICKernelBase2_handcode_single.h [code]
ComputeNonbondedMICKernelBase2_scalar.h [code]
ComputeNonbondedPair.C [code]
ComputeNonbondedPair.h [code]
ComputeNonbondedPProf.C [code]
ComputeNonbondedSelf.C [code]
ComputeNonbondedSelf.h [code]
ComputeNonbondedSplitting.h [code]
ComputeNonbondedStd.C [code]
ComputeNonbondedTabEnergies.C [code]
ComputeNonbondedTI.C [code]
ComputeNonbondedUtil.C [code]
ComputeNonbondedUtil.h [code]
ComputePatch.C [code]
ComputePatch.h [code]
ComputePatchPair.C [code]
ComputePatchPair.h [code]
ComputePme.C [code]
ComputePme.h [code]
ComputePmeCUDA.C [code]
ComputePmeCUDA.h [code]
ComputePmeCUDAKernel.cu [code]
ComputePmeCUDAKernel.h [code]
ComputePmeCUDAMgr.C [code]
ComputePmeCUDAMgr.h [code]
ComputeQM.C [code]
ComputeQM.h [code]
ComputeRestraints.C [code]
ComputeRestraints.h [code]
ComputeSelfTuples.h [code]
ComputeSphericalBC.C [code]
ComputeSphericalBC.h [code]
ComputeStir.C [code]
ComputeStir.h [code]
ComputeTclBC.C [code]
ComputeTclBC.h [code]
ComputeThole.C [code]
ComputeThole.h [code]
ComputeThole.inl [code]
ConfigList.C [code]
ConfigList.h [code]
Controller.C [code]
Controller.h [code]
CudaComputeGBISKernel.cu [code]
CudaComputeGBISKernel.h [code]
CudaComputeNonbonded.C [code]
CudaComputeNonbonded.h [code]
CudaComputeNonbondedKernel.cu [code]
CudaComputeNonbondedKernel.h [code]
CudaNonbondedTables.C [code]
CudaNonbondedTables.h [code]
CudaPmeSolver.C [code]
CudaPmeSolver.h [code]
CudaPmeSolverUtil.C [code]
CudaPmeSolverUtil.h [code]
CudaPmeSolverUtilKernel.cu [code]
CudaPmeSolverUtilKernel.h [code]
CudaTileListKernel.cu [code]
CudaTileListKernel.h [code]
CudaUtils.C [code]
CudaUtils.h [code]
DataExchanger.C [code]
DataExchanger.h [code]
DataStream.C [code]
DataStream.h [code]
dcdlib.C [code]
dcdlib.h [code]
Debug.h [code]
DeviceCUDA.C [code]
DeviceCUDA.h [code]
DeviceCUDAkernel.cu [code]
diffbinpdb.c [code]
DumpBench.C [code]
DumpBench.h [code]
DumpBenchParams.h [code]
dumpdcd.c [code]
eabf.h [code]
eabf1D.C [code]
eabf1D.h [code]
eabf2D.C [code]
eabf2D.h [code]
eabffunc.C [code]
eabffunc.h [code]
eabfTcl.C [code]
elements.h [code]
erf.C [code]
fftlib.C [code]
fftlib.h [code]
fftmap.h [code]
fitrms.C [code]
fitrms.h [code]
fixdcd.c [code]
flipbinpdb.c [code]
flipdcd.c [code]
FreeEnergyAssert.C [code]
FreeEnergyAssert.h [code]
FreeEnergyEnums.h [code]
FreeEnergyGroup.C [code]
FreeEnergyGroup.h [code]
FreeEnergyLambda.C [code]
FreeEnergyLambda.h [code]
FreeEnergyLambdMgr.C [code]
FreeEnergyLambdMgr.h [code]
FreeEnergyMain.C [code]
FreeEnergyParse.C [code]
FreeEnergyParse.h [code]
FreeEnergyRestrain.C [code]
FreeEnergyRestrain.h [code]
FreeEnergyRMgr.C [code]
FreeEnergyRMgr.h [code]
FreeEnergyVector.C [code]
FreeEnergyVector.h [code]
fstream_namd.C [code]
fstream_namd.h [code]
GlobalMaster.C [code]
GlobalMaster.h [code]
GlobalMasterColvars.h [code]
GlobalMasterEasy.C [code]
GlobalMasterEasy.h [code]
GlobalMasterFreeEnergy.C [code]
GlobalMasterFreeEnergy.h [code]
GlobalMasterIMD.C [code]
GlobalMasterIMD.h [code]
GlobalMasterMisc.C [code]
GlobalMasterMisc.h [code]
GlobalMasterServer.C [code]
GlobalMasterServer.h [code]
GlobalMasterSMD.C [code]
GlobalMasterSMD.h [code]
GlobalMasterSymmetry.C [code]
GlobalMasterSymmetry.h [code]
GlobalMasterTcl.C [code]
GlobalMasterTcl.h [code]
GlobalMasterTest.C [code]
GlobalMasterTest.h [code]
GlobalMasterTMD.C [code]
GlobalMasterTMD.h [code]
GoMolecule.C [code]
GridForceGrid.C [code]
GridForceGrid.h [code]
GridForceGrid.inl [code]
GromacsTopFile.C [code]
GromacsTopFile.h [code]
heap.C [code]
heap.h [code]
HomePatch.C [code]
HomePatch.h [code]
HomePatchList.h [code]
Hydrogen.h [code]
imd.C [code]
imd.h [code]
IMDOutput.C [code]
IMDOutput.h [code]
InfoStream.C [code]
InfoStream.h [code]
largefiles.h [code]
Lattice.h [code]
LdbCoordinator.C [code]
LdbCoordinator.h [code]
LJTable.C [code]
LJTable.h [code]
loaddcd.c [code]
main.C [code]
main.h [code]
mainfunc.C [code]
MathArray.h [code]
Matrix4.C [code]
Matrix4.h [code]
Matrix4Symmetry.C [code]
Matrix4Symmetry.h [code]
Measure.C [code]
Measure.h [code]
memusage.C [code]
memusage.h [code]
MGridforceParams.C [code]
MGridforceParams.h [code]
MigrateAtomsMsg.C [code]
MigrateAtomsMsg.h [code]
Migration.h [code]
moduleinit.C [code]
Molecule.C [code]
Molecule.h [code]
Molecule2.C [code]
MoleculeQM.C [code]
msm.c [code]
msm.h [code]
msm_defn.h [code]
msm_longrng.c [code]
msm_longrng_sprec.c [code]
msm_setup.c [code]
msm_shortrng.c [code]
msm_shortrng_sprec.c [code]
MsmMacros.h [code]
MsmMap.h [code]
MStream.C [code]
MStream.h [code]
NamdCentLB.C [code]
NamdCentLB.h [code]
NamdDummyLB.C [code]
NamdDummyLB.h [code]
NamdHybridLB.C [code]
NamdHybridLB.h [code]
NamdNborLB.C [code]
NamdNborLB.h [code]
NamdOneTools.C [code]
NamdOneTools.h [code]
NamdState.C [code]
NamdState.h [code]
NamdTypes.h [code]
Node.C [code]
Node.h [code]
ObjectArena.h [code]
OptPme.C [code]
OptPme.h [code]
OptPmeRealSpace.C [code]
OptPmeRealSpace.h [code]
Output.C [code]
Output.h [code]
OwnerBox.h [code]
packmsg.h [code]
ParallelIOMgr.C [code]
ParallelIOMgr.h [code]
Parameters.C [code]
Parameters.h [code]
parm.C [code]
parm.h [code]
ParseOptions.C [code]
ParseOptions.h [code]
Patch.C [code]
Patch.h [code]
PatchMap.C [code]
PatchMap.h [code]
PatchMap.inl [code]
PatchMgr.C [code]
PatchMgr.h [code]
PatchTypes.h [code]
PDB.C [code]
PDB.h [code]
PDBData.C [code]
PDBData.h [code]
PluginIOMgr.C [code]
PluginIOMgr.h [code]
PmeBase.h [code]
PmeBase.inl [code]
PmeKSpace.C [code]
PmeKSpace.h [code]
PmeRealSpace.C [code]
PmeRealSpace.h [code]
PmeSolver.C [code]
PmeSolver.h [code]
PmeSolverUtil.h [code]
Pointer.h [code]
PressureProfile.h [code]
Priorities.h [code]
ProcessorPrivate.C [code]
ProcessorPrivate.h [code]
ProxyMgr.C [code]
ProxyMgr.h [code]
ProxyPatch.C [code]
ProxyPatch.h [code]
pub3dfft.C [code]
pub3dfft.h [code]
Random.h [code]
Rebalancer.C [code]
Rebalancer.h [code]
RecBisection.C [code]
RecBisection.h [code]
ReductionMgr.C [code]
ReductionMgr.h [code]
RefineOnly.C [code]
RefineOnly.h [code]
RefineTorusLB.C [code]
RefineTorusLB.h [code]
ReserveArray.h [code]
ResizeArray.h [code]
ResizeArrayIter.h [code]
ResizeArrayPrimIter.h [code]
ResizeArrayRaw.h [code]
ScriptTcl.C [code]
ScriptTcl.h [code]
Sequencer.C [code]
Sequencer.h [code]
Set.C [code]
Set.h [code]
Settle.C [code]
Settle.h [code]
SimParameters.C [code]
SimParameters.h [code]
SortableResizeArray.h [code]
SortAtoms.C [code]
SortAtoms.h [code]
SortedArray.h [code]
sortreplicas.c [code]
strlib.C [code]
strlib.h [code]
structures.h [code]
Sync.C [code]
Sync.h [code]
TclCommands.C [code]
TclCommands.h [code]
TclVec.C [code]
Tensor.h [code]
Thread.h [code]
TorusLB.C [code]
TorusLB.h [code]
TupleTypesCUDA.h [code]
UniqueSet.h [code]
UniqueSetIter.h [code]
UniqueSetRaw.h [code]
UniqueSortedArray.h [code]
varsizemsg.h [code]
Vector.h [code]
vmdsock.C [code]
vmdsock.h [code]
wkfutils.c [code]
wkfutils.h [code]
WorkDistrib.C [code]
WorkDistrib.h [code]

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