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Definition at line 59 of file Debug.h.
Referenced by GlobalMasterServer::addClient(), GlobalMasterFreeEnergy::addForce(), GridforceFullSubGrid::addToSubgridsFlat(), Molecule::atoms_1to4(), BroadcastClient::awaken(), ProxyPatch::boxClosed(), HomePatch::boxClosed(), Molecule::build_go_arrays(), Molecule::build_go_sigmas(), Molecule::build_gridforce_params(), GridforceFullMainGrid::buildSubgridsFlat(), GlobalMasterTest::calculate(), GlobalMasterTcl::calculate(), GlobalMasterIMD::calculate(), PatchMap::checkMap(), ComputeMap::checkMap(), checkSum(), CollectionMaster::CollectionMaster(), CollectionMgr::CollectionMgr(), GridforceFullSubGrid::compute_b(), GridforceFullMainGrid::compute_b(), GridforceLiteGrid::compute_derivative_grids(), GridforceFullBaseGrid::compute_VdV(), GridforceLiteGrid::compute_wts(), ComputeEwald::ComputeEwald(), TholeElem::computeForce(), ImproperElem::computeForce(), DihedralElem::computeForce(), CrosstermElem::computeForce(), BondElem::computeForce(), AnisoElem::computeForce(), AngleElem::computeForce(), ComputeGlobal::ComputeGlobal(), ComputePme::ComputePme(), NamdState::configListInit(), ComputeMgr::createComputes(), WorkDistrib::createHomePatches(), ProxyMgr::createProxy(), HomePatch::depositMigration(), CollectionMaster::disposeForces(), CollectionMaster::disposePositions(), CollectionMaster::disposeVelocities(), MigrateAtomsCombinedMsg::distribute(), WorkDistrib::distributeHomePatches(), ComputeGridForce::do_calc(), HomePatch::doAtomMigration(), ComputeNonbondedSelf::doForce(), ComputeNonbondedPair::doForce(), ComputeGridForce::doForce(), ComputeMgr::doneUpdateLocalComputes(), PatchMap::downstreamNeighbors(), OptPmeCompute::doWork(), ComputePme::doWork(), ComputePatch::doWork(), ComputeHomePatch::doWork(), ComputeGlobal::doWork(), ComputeFullDirect::doWork(), Compute::doWork(), MOStream::end(), Compute::enqueueWork(), GridforceGrid::fits_lattice(), Patch::forceBoxClosed(), GridforceLiteGrid::get_all_gridvals(), GridforceFullMainGrid::get_all_gridvals(), GridforceGrid::get_corner(), Molecule::get_go_energy_new(), Molecule::get_go_force_new(), PatchMap::getPatchesInOctet(), GlobalMasterEasy::GlobalMasterEasy(), GlobalMasterFreeEnergy::GlobalMasterFreeEnergy(), GlobalMasterIMD::GlobalMasterIMD(), GlobalMasterServer::GlobalMasterServer(), GlobalMasterSMD::GlobalMasterSMD(), GlobalMasterSymmetry::GlobalMasterSymmetry(), GlobalMasterTcl::GlobalMasterTcl(), GlobalMasterTMD::GlobalMasterTMD(), GridforceFullSubGrid::GridforceFullSubGrid(), GridforceLiteGrid::initialize(), GridforceFullSubGrid::initialize(), GridforceFullMainGrid::initialize(), ComputePatchPair::initialize(), ComputePatch::initialize(), ComputeLCPO::initialize(), ComputeHomePatch::initialize(), GridforceLiteGrid::linear_interpolate(), HomePatch::loweAndersenFinish(), HomePatch::loweAndersenVelocities(), WorkDistrib::mapComputes(), GlobalMaster::modifyRequestedGroups(), Node::Node(), PatchMap::oneAwayNeighbors(), PatchMap::oneOrTwoAwayNeighbors(), OptPmeCompute::OptPmeCompute(), PatchMap::pack(), GridforceFullSubGrid::pack(), GridforceFullMainGrid::pack(), GridforceFullBaseGrid::pack(), ComputeMap::pack(), LdbCoordinator::patchLoad(), WorkDistrib::patchMapInit(), Compute::patchReady(), Patch::positionsReady(), HomePatch::positionsReady(), Parameters::print_angle_params(), Molecule::print_atoms(), Parameters::print_bond_params(), Molecule::print_bonds(), Parameters::print_dihedral_params(), Molecule::print_exclusions(), Molecule::print_go_params(), Molecule::print_go_sigmas(), Parameters::print_improper_params(), Parameters::print_nbthole_pair_params(), Parameters::print_vdw_pair_params(), Parameters::print_vdw_params(), ComputeMap::printComputeMap(), ProxyPatch::ProxyPatch(), Molecule::read_go_file(), GridforceFullBaseGrid::readHeader(), GridforceFullBaseGrid::readSubgridHierarchy(), LdbCoordinator::rebalance(), Molecule::receive_Molecule(), ProxyPatch::receiveAll(), ProxyPatch::receiveData(), HomePatch::receiveResults(), GlobalMasterServer::recvData(), PatchMgr::recvMigrateAtomsCombined(), ComputeGlobal::recvResults(), ReductionMgr::ReductionMgr(), Patch::registerDEdaSumDeposit(), Patch::registerForceDeposit(), Patch::registerPositionPickup(), HomePatch::registerProxy(), Patch::registerPsiSumDeposit(), GridforceFullMainGrid::reinitialize(), Node::reloadGridforceGrid(), LdbCoordinator::resume(), LdbCoordinator::resume2(), LdbCoordinator::resumeReady(), Sequencer::run(), Node::run(), Controller::run(), ScriptTcl::ScriptTcl(), Molecule::send_Molecule(), PatchMgr::sendMigrationMsgs(), GridforceLiteGrid::set_all_gridvals(), GridforceFullMainGrid::set_all_gridvals(), Node::startup(), NamdState::status(), BroadcastClient::suspendFor(), PatchMap::unpack(), GridforceFullSubGrid::unpack(), GridforceFullMainGrid::unpack(), GridforceFullBaseGrid::unpack(), ComputeMap::unpack(), Patch::unregisterAvgPositionPickup(), Patch::unregisterForceDeposit(), PatchMap::unregisterPatch(), Patch::unregisterPositionPickup(), Patch::unregisterVelocityPickup(), LdbCoordinator::updateComputesReady(), PatchMap::upstreamNeighbors(), Patch::velocityBoxClosed(), ComputeHomePatch::~ComputeHomePatch(), ComputeLCPO::~ComputeLCPO(), ComputePatch::~ComputePatch(), ComputePatchPair::~ComputePatchPair(), GlobalMasterFreeEnergy::~GlobalMasterFreeEnergy(), GlobalMasterTcl::~GlobalMasterTcl(), ProxyPatch::~ProxyPatch(), and ScriptTcl::~ScriptTcl(). |
