NAMD Class Index

A	ConfigList	MsmSerialForceMsg
ABoundAngleRestraint	ConfigList::ConfigListNode	MsmTimer
ABoundDiheRestraint	Controller	N
ABoundDistRestraint	Controller::checkpoint	NamdCentLB
ABoundPosRestraint	ControllerBroadcasts	NamdDummyLB
ADiheRestraint	ControllerState	NamdHybridLB
ADistRestraint	cptr_sortop_priority	NamdNborLB
AFixedAngleRestraint	CpuPmeAtomStorage	NamdState
AFixedDiheRestraint	cr_sortop_distance	nbthole_pair_params
AFixedDistRestraint	cr_sortop_reverse_priority	nbthole_pair_value
AFixedPosRestraint	crossterm	netint
AForcingAngleRestraint	crossterm_params	NL_Msm_t
AForcingDiheRestraint	CrosstermData	Node
AForcingDistRestraint	CrosstermElem	NodePmeInfo
AForcingPosRestraint	CrosstermValue	NodePmeMgr
AGroup	cuda_args_t	NodeProxyMgr
ALambdaControl	CudaAngle	nodesort
ALambdaManager	CudaAngleValue	nonbonded
Alg7	CudaAtom	NonbondedCUDASkipMsg
AlgNbor	CudaBond	NonbondedCUDASlaveMsg
AlgRecBisection	CudaBondValue	NonbondedExclValue
AlignVector	CudaComputeGBISKernel	NonbondedMICSkipMsg
AnAngleRestraint	CudaComputeNonbonded	NonbondedMICSlaveMsg
angle	CudaComputeNonbonded::ComputeRecord	NumDevicesMsg
angle_params	CudaComputeNonbonded::PatchRecord	O
AngleElem	CudaComputeNonbondedKernel	ObjectArena
AngleTable	CudaComputeNonbondedMsg	ofstream_namd
AngleValue	CudaComputeRecord	OptPmeCompute
aniso	CudaCrossterm	OptPmeDummyMsg
AnisoElem	CudaCrosstermValue	OptPmeFFTMsg
APosRestraint	CudaDihedral	OptPmeGridMsg
ARestraint	CudaDihedralValue	OptPmeMgr
ARestraintManager	CudaExclusion	OptPmePencil
Array	CudaFFTCompute	OptPmePencilInitMsg
Array (msm)	CudaForce	OptPmePencilInitMsgData
assert_ProxyResultVarsizeMsg	CudaNonbondedTables	OptPmePencilMapX
atom_constants	CudaPatchRecord	OptPmePencilMapY
atom_name_info	CudaPmeAtomStorage	OptPmePencilMapZ
AtomCoord (msm)	CudaPmeKSpaceCompute	OptPmeRealSpace
AtomCstInfo	CudaPmePencilX	OptPmeSubComputeMsg
atomID_less	CudaPmePencilXY	OptPmeXPencil
AtomMap	CudaPmePencilXYZ	OptPmeYPencil
AtomMapper	CudaPmePencilY	OptPmeZPencil
AtomNameIdx	CudaPmePencilZ	Output
AtomsCntPerPatchMsg	CudaPmeRealSpaceCompute	OutputAtomRecord
AtomSigInfo	CudaPmeTranspose	OutputAtomRecord::floatVals
AtomSignature	CudaPmeXInitMsg	OutputAtomRecord::integerVals
AtomTable	CudaPmeXYInitMsg	OutputAtomRecord::shortVals
AVector	CudaPmeXYZInitMsg	OwnerBox
B	CudaStaticAssert< true >	P
BackEnd	CudaTileListKernel	Pairlists
BasicAtomInfo	D	PairTable
BlockDiagram (msm)	DataExchanger	PAL
BlockIndex (msm)	DataMessage	ParallelIOMgr
BlockSend (msm)	datastream	Parameters
BOCgroup	DataStreamMsg	parm
BOID	DeviceBuffer	ParseOptions
bond	DeviceCUDA	ParseOptions::DataElement
bond_params	DeviceDataMsg	Patch
BondElem	dihedral	patch_sortop_curve_a
BondTable	dihedral_params	patch_sortop_curve_b
BondValue	DihedralElem	patch_sortop_curve_c
BoundingBox	DihedralTable	PatchData (msm)
Box	DihedralValue	patchDataStrc
BroadcastClient	doublecomplex	PatchDiagram (msm)
BroadcastClientElem	drude_constants	PatchElem
BroadcastMgr	dummyData	PatchGridElem
BroadcastMsg	E	patchInfo
C	eABF	PatchInfo
C1Matrix	eABF1D	PatchMap
C1Vector	eABF2D	PatchMapMsg
CBase_OptPmeXPencil	Entry	PatchMgr
CBase_OptPmeYPencil	EntryGlob	PatchPairRecord
CBase_OptPmeZPencil	EwaldParticle	PatchProxyListMsg
CBase_PmeXPencil	ExchangeAtomsMsg	PatchSend (msm)
CBase_PmeYPencil	ExchangeAtomsReqMsg	PDB
CBase_PmeZPencil	ExclElem	PDBAtom
CheckpointAtomsMsg	exclmask	PDBAtomRecord
CheckpointAtomsReqMsg	ExclSigInfo	PDBData
CheckpointMsg	Exclusion	PDBHetatm
CkCallbackWrapper	ExclusionCheck	PDBUnknown
ClusterCoorElem	ExclusionSignature	pe_sortop_bit_reversed
ClusterCoorMsg	exlist_sortop	pe_sortop_coord_x
ClusterElem	ExtCoordMsg	pe_sortop_coord_y
ClusterSizeMsg	ExtForce	PencilElement
CollectionMaster	ExtForceMsg	pid_sortop_reverse_priority
CollectionMaster::CollectVectorInstance	F	PluginIOMgr
CollectionMaster::CollectVectorSequence	FFTCompute	PmeAckMsg
CollectionMgr	FileStack	PmeAtomFiler
CollectionMgr::CollectVectorInstance	FinishWorkMsg	PmeAtomMsg
CollectionMgr::CollectVectorSequence	Flags	PmeAtomPencilMsg
CollectLoadsMsg	float2	PmeAtomStorage
CollectVectorMsg	floatcomplex	PmeBlockMsg
CollectVectorVarMsg	FloatVector	PmeDoneMsg
colvar	FmmSerialCoordMsg	PmeEvirMsg
colvar::alpha_angles	FmmSerialForceMsg	PmeFFTInfo
colvar::angle	FoldFactor (msm)	PmeForceMsg
colvar::cartesian	four_body_consts	PmeForcePencilMsg
colvar::coordnum	FullAtom	PmeGrid
colvar::cvc	G	PmeGridMsg
colvar::dihedPC	gather_t	PmeKSpace
colvar::dihedral	GBISCoordMsg	PmeKSpaceCompute
colvar::dipole_angle	GBISForceMsg	PmeLaunchMsg
colvar::distance	GBISInput	PmeParticle
colvar::distance_dir	GBISInput< 1 >	PmePencil
colvar::distance_inv	GBISInput< 2 >	PmePencilInitMsg
colvar::distance_pairs	GBISInput< 3 >	PmePencilInitMsgData
colvar::distance_vec	GBISParam	PmePencilMap
colvar::distance_xy	GBISParam< 1 >	PmePencilX
colvar::distance_z	GBISParam< 2 >	PmePencilXMap
colvar::eigenvector	GBISParam< 3 >	PmePencilXY
colvar::groupcoordnum	GBISParamStruct	PmePencilXYMap
colvar::gyration	GBISResults	PmePencilXYZ
colvar::h_bond	GBISResults< 1 >	PmePencilXYZMap
colvar::inertia	GBISResults< 2 >	PmePencilY
colvar::inertia_z	GBISResults< 3 >	PmePencilZ
colvar::orientation	GenericAngle	PmeRealSpace
colvar::orientation_angle	GenericAtom	PmeRealSpaceCompute
colvar::orientation_proj	GenericBond	PmeRunMsg
colvar::polar_phi	GenericDihedral	PmeSelfEnergyMsg
colvar::polar_theta	GenericMol	PmeSharedTransMsg
colvar::rmsd	GlobalMaster	PmeSharedUntransMsg
colvar::selfcoordnum	GlobalMasterEasy	PmeStartMsg
colvar::spin_angle	GlobalMasterFreeEnergy	PmeTransMsg
colvar::tilt	GlobalMasterIMD	PmeTranspose
colvar_grid	GlobalMasterMisc	PmeUntransMsg
colvar_grid_count	GlobalMasterServer	PmeXPencil
colvar_grid_gradient	GlobalMasterSMD	PmeYPencil
colvar_grid_scalar	GlobalMasterSymmetry	PmeZPencil
colvarbias	GlobalMasterTcl	pntChrgDist
colvarbias_abf	GlobalMasterTest	Pointer
colvarbias_alb	GlobalMasterTMD	position_index
colvarbias_histogram	go_pair	PressureProfileReduction
colvarbias_meta	go_val	PriorityQueue (msm)
colvarbias_meta::hill	Grid (msm)	processorInfo
colvarbias_restraint	GridFixed (msm)	ProxyCombinedResultMsg
colvarbias_restraint_centers	GridforceFullBaseGrid	ProxyCombinedResultRawMsg
colvarbias_restraint_centers_moving	GridforceFullBaseGrid::GridIndices	ProxyDataMsg
colvarbias_restraint_harmonic	GridforceFullMainGrid	ProxyElem
colvarbias_restraint_harmonic_walls	GridforceFullSubGrid	ProxyGBISP1ResultMsg
colvarbias_restraint_histogram	GridforceGrid	ProxyGBISP2DataMsg
colvarbias_restraint_k	GridforceLiteGrid	ProxyGBISP2ResultMsg
colvarbias_restraint_k_moving	GridMsg	ProxyGBISP3DataMsg
colvarbias_restraint_linear	GroGaussPair	ProxyListInfo
colvarbias_restraint_moving	GroLJPair	ProxyMgr
colvardeps	gromacsPair	ProxyNodeAwareSpanningTreeMsg
colvardeps::feature	GromacsPairElem	ProxyPatch
colvardeps::feature_state	GromacsPairValue	ProxyResultMsg
colvarmodule	GromacsTopFile	ProxyResultVarsizeMsg
colvarmodule::atom	GroupInitMsg	ProxySpanningTreeMsg
colvarmodule::atom_group	H	ProxyTree
colvarmodule::matrix2d	HashPool	proxyTreeNode
colvarmodule::matrix2d::row	HashPoolAdaptorT	ProxyUsage
colvarmodule::quaternion	HashReal	ProxyUsageKey
colvarmodule::rmatrix	HashString	Q
colvarmodule::rotation	heapIterator	QMAtomData
colvarmodule::rvector	heapRecord	QMCoordMsg
colvarmodule::vector1d	HomePatch	QMForce
colvarparse	HomePatch::checkpoint_t	QMForceMsg
colvarparse::read_block	HomePatch::RattleList	QMGrpCalcMsg
colvarproxy	HomePatchElem	QMGrpResMsg
colvarproxy_namd	HydroBasedMsg	QMPntChrgMsg
colvarscript	HydrogenGroupID	qmSolvData
colvarvalue	I	R
Communicate	idIndxStr	Random
CompAtom	ijpair	RattleParam
CompAtomExt	ijpair_sortop_bit_reversed	Rebalancer
Compute	IMDEnergies	Rebalancer::pcpair
ComputeAngles	IMDheader	RecBisection
ComputeAniso	IMDOutput	RecipVirial_t
ComputeBondedCUDAKernel	improper	RecvDeviceMsg
ComputeBondedCUDAKernel::BondedVirial	improper_params	ReductionMgr
ComputeBonds	ImproperElem	ReductionRegisterMsg
ComputeConsForce	ImproperValue	ReductionSet
ComputeConsForceMsg	indexed_nbthole_pair	ReductionSetData
ComputeConsTorque	indexed_table_pair	ReductionSubmitMsg
ComputeCrossterms	indexed_vdw_pair	RefineOnly
ComputeCUDAMgr	IndexRange (msm)	RefineTorusLB
ComputeCylindricalBC	InfoRecord	refSelStr
ComputeDihedrals	infostream	RegisterPatchMsg
ComputeDPMEDataMsg	InitDeviceMsg	RegisterProxyMsg
ComputeDPMEResultsMsg	InitDeviceMsg2	ReplicaDcdAckMsg
ComputeEField	InputAtom	ReplicaDcdDataMsg
ComputeEwald	Int2	ReplicaDcdInitMsg
ComputeEwaldMsg	Int3	RequireReduction
ComputeExcls	InterpParams_t	ResidueLookupElem
ComputeExt	intpair	ResizeArray
ComputeExtAtom	IRSet	ResizeArrayIter
ComputeExtMgr	Iterator	ResizeArrayPrimIter
ComputeFmmSerial	Ivec (msm)	ResizeArrayRaw
ComputeFmmSerialAtom	L	Results
ComputeFmmSerialMgr	LargeIRSet	S
ComputeFullDirect	Lattice	ScriptParamMsg
ComputeGBISAtom	LCPOAtom	ScriptTcl
ComputeGBISser	LCPONeighborList	seg_resid
ComputeGBISserMgr	LdbCoordinator	Sequencer
ComputeGlobal	LdbMigrateMsg	SetLatticeMsg
ComputeGlobalDataMsg	listNode	SimParameters
ComputeGlobalResultsMsg	LJTable	SimpleBroadcastObject
ComputeGridForce	LJTable::TableEntry	SlaveInitMsg
ComputeGromacsPair	LocalID	SortableResizeArray
ComputeHomePatch	LocalLBInfoMsg	SortedArray
ComputeHomePatches	LocalPmeInfo	sortop_base
ComputeHomeTuples	LocalWorkMsg	sortop_bit_reversed
ComputeImpropers	lphost	sortop_x
computeInfo	LSSDataStr	sortop_y
ComputeLCPO	lssDistSort	sortop_z
ComputeMap	LSSSubsDat	SplitComputesMsg
ComputeMap::ComputeData	M	StreamMessage
ComputeMap::PatchRec	main	StringList
ComputeMapChangeMsg	Map (msm)	SubmitReduction
ComputeMapMsg	MathArray	Sync
ComputeMgr	Matrix4	T
ComputeMoa	Matrix4Symmetry	table_pair_params
ComputeMsm	Matrix4TMD	TaggedMsg
ComputeMsmMgr	maxHeap	Tensor
ComputeMsmSerial	Measure	thole
ComputeMsmSerialAtom	meMMQMGrp	TholeElem
ComputeMsmSerialMgr	memusageinit	TileExcl
ComputeNonbondedCUDA	MGridforceParams	TileList
ComputeNonbondedCUDA::compute_record	MGridforceParamsList	TileListStat
ComputeNonbondedCUDA::patch_record	MigrateAtomsCombinedMsg	TileListVirialEnergy
ComputeNonbondedMIC	MigrateAtomsMsg	TopoManagerWrapper
ComputeNonbondedMIC::compute_record	MigrationInfo	TopoManagerWrapper::pe_sortop_topo
ComputeNonbondedMIC::patch_record	minHeap	TorusLB
ComputeNonbondedPair	minpoint	Transform
ComputeNonbondedSelf	MIStream	TransposeBatch
ComputeNonbondedUtil	MoaData	TuplePatchElem
ComputeNonbondedWorkArrays	Molecule	TupleSignature
ComputePatch	MolInfoMsg	U
ComputePatchPair	MolInst	UniqueSet
ComputePme	MOStream	UniqueSetIter
ComputePmeCUDA	MoveAllByMsg	UniqueSetRaw
ComputePmeCUDADevice	MoveAtomMsg	UniqueSortedArray
ComputePmeCUDAMgr	MoveInputAtomsMsg	UnregisterProxyMsg
ComputePmeMgr	MovePatch	V
ComputePmeMgr::cuda_submit_charges_args	MovePatchAtomsMsg	vdw_pair_params
ComputeQM	MovePatchesMsg	vdw_params
ComputeQMAtom	MsmBlock	vdw_val
ComputeQMMgr	MsmBlockKernel	VDWTable
ComputeQMPntChrg	MsmBlockMap	vect
ComputeRestraints	MsmBlockProxyMsg	Vector
ComputeSelfAngles	MsmC1HermiteBlock	VirialEnergy
ComputeSelfAniso	MsmC1HermiteBlockProxyMsg	vmdforce
ComputeSelfBonds	MsmC1HermiteGridCutoff	W
ComputeSelfCrossterms	MsmC1HermiteGridCutoffProxyMsg	wkf_timer
ComputeSelfDihedrals	MsmC1HermiteGridCutoffSetupMsg	wkfmsgtimer
ComputeSelfExcls	MsmGridCutoff	WorkDistrib
ComputeSelfGromacsPair	MsmGridCutoffInitMsg	WorkDistrib::pe_sortop_compact
ComputeSelfImpropers	MsmGridCutoffKernel	WorkDistrib::pe_sortop_diffuse
ComputeSelfThole	MsmGridCutoffMap	WorkIndex
ComputeSelfTuples	MsmGridCutoffProxyMsg	Z
ComputeSphericalBC	MsmGridCutoffSetupMsg	zVector
ComputeStir	MsmInitMsg	_
ComputeTclBC	MsmProfiler	__sort_entry
ComputeThole	MsmSerialCoordMsg

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