Class Index

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A	CudaPmePencilZ	NodePmeInfo
ABoundAngleRestraint	CudaPmeRealSpaceCompute	NodePmeMgr
ABoundDiheRestraint	CudaPmeTranspose	NodeProxyMgr
ABoundDistRestraint	CudaPmeXInitMsg	nodesort
ABoundPosRestraint	CudaPmeXYInitMsg	nonbonded
ADiheRestraint	CudaPmeXYZInitMsg	NonbondedCUDASkipMsg
ADistRestraint	CudaStaticAssert< true >	NonbondedCUDASlaveMsg
AFixedAngleRestraint	CudaTileListKernel	NonbondedExclValue
AFixedDiheRestraint	D	NonbondedMICSkipMsg
AFixedDistRestraint	ParseOptions::DataElement	NonbondedMICSlaveMsg
AFixedPosRestraint	DataExchanger	NumDevicesMsg
AForcingAngleRestraint	DataMessage	O
AForcingDiheRestraint	datastream	ObjectArena
AForcingDistRestraint	DataStreamMsg	ofstream_namd
AForcingPosRestraint	DeviceBuffer	Output
AGroup	DeviceCUDA	OutputAtomRecord
ALambdaControl	DeviceDataMsg	OwnerBox
ALambdaManager	dihedral	P
Alg7	dihedral_params	Pairlists
AlgNbor	DihedralElem	PairTable
AlgRecBisection	DihedralTable	PAL
AlignVector	DihedralValue	ParallelIOMgr
AnAngleRestraint	doublecomplex	Parameters
angle	drude_constants	parm
angle_params	dummyData	ParseOptions
AngleElem	E	Patch
AngleTable	eABF	ComputeNonbondedMIC::patch_record
AngleValue	eABF1D	ComputeNonbondedCUDA::patch_record
aniso	eABF2D	patch_sortop_curve_a
AnisoElem	Entry	patch_sortop_curve_b
APosRestraint	EntryGlob	patch_sortop_curve_c
ARestraint	EwaldParticle	PatchData (msm)
ARestraintManager	ExchangeAtomsMsg	patchDataStrc
Array	ExchangeAtomsReqMsg	PatchDiagram (msm)
Array (msm)	ExclElem	PatchElem
assert_ProxyResultVarsizeMsg	exclmask	patchInfo
atom_constants	ExclSigInfo	PatchInfo
atom_name_info	Exclusion	PatchMap
AtomCoord (msm)	ExclusionCheck	PatchMapMsg
AtomCstInfo	ExclusionSignature	PatchMgr
atomID_less	exlist_sortop	PatchPairRecord
AtomMap	ExtCoordMsg	PatchProxyListMsg
AtomMapper	ExtForce	ComputeMap::PatchRec
AtomNameIdx	ExtForceMsg	CudaComputeNonbonded::PatchRecord
AtomsCntPerPatchMsg	F	PatchSend (msm)
AtomSigInfo	FFTCompute	Rebalancer::pcpair
AtomSignature	FileStack	PDB
AtomTable	FinishWorkMsg	PDBAtom
AVector	Flags	PDBAtomRecord
B	float2	PDBData
BackEnd	floatcomplex	PDBHetatm
BasicAtomInfo	OutputAtomRecord::floatVals	PDBUnknown
BlockDiagram (msm)	FloatVector	pe_sortop_bit_reversed
BlockIndex (msm)	FmmSerialCoordMsg	WorkDistrib::pe_sortop_compact
BlockSend (msm)	FmmSerialForceMsg	pe_sortop_coord_x
BOCgroup	FoldFactor (msm)	pe_sortop_coord_y
BOID	four_body_consts	WorkDistrib::pe_sortop_diffuse
bond	FullAtom	TopoManagerWrapper::pe_sortop_topo
bond_params	G	pid_sortop_reverse_priority
ComputeBondedCUDAKernel::BondedVirial	gather_t	PluginIOMgr
BondElem	GBISCoordMsg	PmeAckMsg
BondTable	GBISForceMsg	PmeAtomFiler
BondValue	GBISInput	PmeAtomMsg
BoundingBox	GBISInput< 1 >	PmeAtomPencilMsg
Box	GBISInput< 2 >	PmeAtomStorage
BroadcastClient	GBISInput< 3 >	PmeBlockMsg
BroadcastClientElem	GBISParam	PmeDoneMsg
BroadcastMgr	GBISParam< 1 >	PmeEvirMsg
BroadcastMsg	GBISParam< 2 >	PmeForceMsg
C	GBISParam< 3 >	PmeForcePencilMsg
C1Matrix	GBISParamStruct	PmeGrid
C1Vector	GBISResults	PmeGridMsg
CBase_PmeXPencil	GBISResults< 1 >	PmeKSpace
CBase_PmeYPencil	GBISResults< 2 >	PmeKSpaceCompute
CBase_PmeZPencil	GBISResults< 3 >	PmeLaunchMsg
Controller::checkpoint	GenericAngle	PmeParticle
HomePatch::checkpoint_t	GenericAtom	PmePencil
CheckpointAtomsMsg	GenericBond	PmePencilInitMsg
CheckpointAtomsReqMsg	GenericDihedral	PmePencilInitMsgData
CheckpointMsg	GenericMol	PmePencilMap
ClusterCoorElem	GlobalMaster	PmePencilX
ClusterCoorMsg	GlobalMasterEasy	PmePencilXMap
ClusterElem	GlobalMasterFreeEnergy	PmePencilXY
ClusterSizeMsg	GlobalMasterIMD	PmePencilXYMap
CollectionMaster	GlobalMasterMisc	PmePencilXYZ
CollectionMgr	GlobalMasterServer	PmePencilXYZMap
CollectLoadsMsg	GlobalMasterSMD	PmePencilY
CollectProxyVectorInstance	GlobalMasterSymmetry	PmePencilZ
CollectProxyVectorSequence	GlobalMasterTcl	PmeRealSpace
CollectionMgr::CollectVectorInstance	GlobalMasterTest	PmeRealSpaceCompute
CollectionMaster::CollectVectorInstance	GlobalMasterTMD	PmeRunMsg
CollectVectorMsg	go_pair	PmeSharedTransMsg
CollectionMgr::CollectVectorSequence	go_val	PmeSharedUntransMsg
CollectionMaster::CollectVectorSequence	Grid (msm)	PmeStartMsg
CollectVectorVarMsg	GridFixed (msm)	PmeTransMsg
colvarproxy_namd	GridforceFullBaseGrid	PmeTranspose
Communicate	GridforceFullMainGrid	PmeUntransMsg
CompAtom	GridforceFullSubGrid	PmeXPencil
CompAtomExt	GridforceGrid	PmeYPencil
Compute	GridforceLiteGrid	PmeZPencil
ComputeNonbondedMIC::compute_record	GridforceFullBaseGrid::GridIndices	pntChrgDist
ComputeNonbondedCUDA::compute_record	GridMsg	Pointer
ComputeAngles	GroGaussPair	position_index
ComputeAniso	GroLJPair	PressureProfileReduction
ComputeBondedCUDAKernel	gromacsPair	PriorityQueue (msm)
ComputeBonds	GromacsPairElem	processorInfo
ComputeConsForce	GromacsPairValue	ProxyCombinedResultMsg
ComputeConsForceMsg	GromacsTopFile	ProxyCombinedResultRawMsg
ComputeConsTorque	GroupInitMsg	ProxyDataMsg
ComputeCrossterms	H	ProxyElem
ComputeCUDAMgr	HashPool	ProxyGBISP1ResultMsg
ComputeCylindricalBC	HashPoolAdaptorT	ProxyGBISP2DataMsg
ComputeMap::ComputeData	HashReal	ProxyGBISP2ResultMsg
ComputeDihedrals	HashString	ProxyGBISP3DataMsg
ComputeDPMEDataMsg	heapIterator	ProxyListInfo
ComputeDPMEResultsMsg	heapRecord	ProxyMgr
ComputeEField	HomePatch	ProxyNodeAwareSpanningTreeMsg
ComputeEwald	HomePatchElem	ProxyPatch
ComputeEwaldMsg	HydroBasedMsg	ProxyResultMsg
ComputeExcls	HydrogenGroupID	ProxyResultVarsizeMsg
ComputeExt	I	ProxySpanningTreeMsg
ComputeExtAtom	idIndxStr	ProxyTree
ComputeExtMgr	ijpair	proxyTreeNode
ComputeFmmSerial	ijpair_sortop_bit_reversed	ProxyUsage
ComputeFmmSerialAtom	IMDEnergies	ProxyUsageKey
ComputeFmmSerialMgr	IMDheader	Q
ComputeFullDirect	IMDOutput	QMAtomData
ComputeGBISAtom	improper	QMCoordMsg
ComputeGBISser	improper_params	QMForce
ComputeGBISserMgr	ImproperElem	QMForceMsg
ComputeGlobal	ImproperValue	QMGrpCalcMsg
ComputeGlobalDataMsg	indexed_nbthole_pair	QMGrpResMsg
ComputeGlobalResultsMsg	indexed_table_pair	QMPntChrgMsg
ComputeGridForce	indexed_vdw_pair	qmSolvData
ComputeGromacsPair	IndexRange (msm)	R
ComputeHomePatch	InfoRecord	Random
ComputeHomePatches	infostream	HomePatch::RattleList
ComputeHomeTuples	InitDeviceMsg	RattleParam
ComputeImpropers	InitDeviceMsg2	Rebalancer
computeInfo	InputAtom	RecBisection
ComputeLCPO	Int2	RecipVirial_t
ComputeMap	Int3	RecvDeviceMsg
ComputeMapChangeMsg	OutputAtomRecord::integerVals	ReductionMgr
ComputeMgr	InterpParams_t	ReductionRegisterMsg
ComputeMoa	intpair	ReductionSet
ComputeMsm	IRSet	ReductionSetData
ComputeMsmMgr	Iterator	ReductionSubmitMsg
ComputeMsmSerial	Ivec (msm)	RefineOnly
ComputeMsmSerialAtom	L	RefineTorusLB
ComputeMsmSerialMgr	LargeIRSet	refSelStr
ComputeNonbondedCUDA	Lattice	RegisterPatchMsg
ComputeNonbondedMIC	LCPOAtom	RegisterProxyMsg
ComputeNonbondedPair	LCPONeighborList	ReplicaDcdAckMsg
ComputeNonbondedSelf	LdbCoordinator	ReplicaDcdDataMsg
ComputeNonbondedUtil	LdbMigrateMsg	ReplicaDcdInitMsg
ComputeNonbondedWorkArrays	listNode	RequireReduction
ComputePatch	LJTable	ResidueLookupElem
ComputePatchPair	LocalID	ResizeArray
ComputePme	LocalLBInfoMsg	ResizeArrayIter
ComputePmeCUDA	LocalPmeInfo	ResizeArrayPrimIter
ComputePmeCUDADevice	LocalWorkMsg	ResizeArrayRaw
ComputePmeCUDAMgr	lphost	Results
ComputePmeMgr	LSSDataStr	S
ComputePmeUtil	lssDistSort	ScriptParamMsg
ComputeQM	LSSSubsDat	ScriptTcl
ComputeQMAtom	M	seg_resid
ComputeQMMgr	main	Sequencer
ComputeQMPntChrg	Map (msm)	SetLatticeMsg
CudaComputeNonbonded::ComputeRecord	MathArray	OutputAtomRecord::shortVals
ComputeRestraints	Matrix4	SimParameters
ComputeSelfAngles	Matrix4Symmetry	SimpleBroadcastObject
ComputeSelfAniso	Matrix4TMD	SlaveInitMsg
ComputeSelfBonds	maxHeap	SortableResizeArray
ComputeSelfCrossterms	Measure	SortedArray
ComputeSelfDihedrals	meMMQMGrp	sortop_base
ComputeSelfExcls	memusageinit	sortop_bit_reversed
ComputeSelfGromacsPair	MGridforceParams	sortop_x
ComputeSelfImpropers	MGridforceParamsList	sortop_y
ComputeSelfThole	MigrateAtomsCombinedMsg	sortop_z
ComputeSelfTuples	MigrateAtomsMsg	SplitComputesMsg
ComputeSphericalBC	MigrationInfo	StreamMessage
ComputeStir	minHeap	StringList
ComputeTclBC	minpoint	SubmitReduction
ComputeThole	MIStream	Sync
ConfigList	MoaData	T
ConfigList::ConfigListNode	Molecule	table_pair_params
ConstPointer	MolInfoMsg	LJTable::TableEntry
Controller	MolInst	TaggedMsg
ControllerBroadcasts	MOStream	Tensor
ControllerState	MoveAllByMsg	thole
cptr_sortop_priority	MoveAtomMsg	TholeElem
CpuPmeAtomStorage	MoveInputAtomsMsg	TileExcl
cr_sortop_distance	MovePatch	TileList
cr_sortop_reverse_priority	MovePatchAtomsMsg	TileListStat
crossterm	MovePatchesMsg	TileListVirialEnergy
crossterm_params	MsmBlock	TopoManagerWrapper
CrosstermData	MsmBlockKernel	TorusLB
CrosstermElem	MsmBlockMap	Transform
CrosstermValue	MsmBlockProxyMsg	TransposeBatch
cuda_args_t	MsmC1HermiteBlock	TuplePatchElem
ComputePmeMgr::cuda_submit_charges_args	MsmC1HermiteBlockProxyMsg	TupleSignature
CudaAngle	MsmC1HermiteGridCutoff	U
CudaAngleValue	MsmC1HermiteGridCutoffProxyMsg	UniqueSet
CudaAtom	MsmC1HermiteGridCutoffSetupMsg	UniqueSetIter
CudaBond	MsmGridCutoff	UniqueSetRaw
CudaBondValue	MsmGridCutoffInitMsg	UniqueSortedArray
CudaComputeGBISKernel	MsmGridCutoffKernel	UnregisterProxyMsg
CudaComputeNonbonded	MsmGridCutoffMap	V
CudaComputeNonbondedKernel	MsmGridCutoffProxyMsg	vdw_pair_params
CudaComputeNonbondedMsg	MsmGridCutoffSetupMsg	vdw_params
CudaComputeRecord	MsmInitMsg	vdw_val
CudaCrossterm	MsmProfiler	VDWTable
CudaCrosstermValue	MsmSerialCoordMsg	vect
CudaDihedral	MsmSerialForceMsg	Vector
CudaDihedralValue	MsmTimer	VirialEnergy
CudaExclusion	N	vmdforce
CudaFFTCompute	NamdCentLB	vmdsocket
CudaForce	NamdDummyLB	W
CudaNonbondedTables	NamdHybridLB	wkf_timer
CudaPatchRecord	NamdProfileEvent	wkfmsgtimer
CudaPmeAtomStorage	NamdState	WorkDistrib
CudaPmeKSpaceCompute	nbthole_pair_params	WorkIndex
CudaPmePencilX	nbthole_pair_value	Z
CudaPmePencilXY	netint	zVector
CudaPmePencilXYZ	NL_Msm_t	_
CudaPmePencilY	Node	__sort_entry

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