NAMD Class Index

A	CudaPmeTranspose	NonbondedMICSlaveMsg
ABoundAngleRestraint	CudaPmeXInitMsg	NumDevicesMsg
ABoundDiheRestraint	CudaPmeXYInitMsg	O
ABoundDistRestraint	CudaPmeXYZInitMsg	ObjectArena
ABoundPosRestraint	CudaStaticAssert< true >	ofstream_namd
ADiheRestraint	CudaTileListKernel	OptPmeCompute
ADistRestraint	D	OptPmeDummyMsg
AFixedAngleRestraint	DataExchanger	OptPmeFFTMsg
AFixedDiheRestraint	DataMessage	OptPmeGridMsg
AFixedDistRestraint	datastream	OptPmeMgr
AFixedPosRestraint	DataStreamMsg	OptPmePencil
AForcingAngleRestraint	DeviceBuffer	OptPmePencilInitMsg
AForcingDiheRestraint	DeviceCUDA	OptPmePencilInitMsgData
AForcingDistRestraint	DeviceDataMsg	OptPmePencilMapX
AForcingPosRestraint	dihedral	OptPmePencilMapY
AGroup	dihedral_params	OptPmePencilMapZ
ALambdaControl	DihedralElem	OptPmeRealSpace
ALambdaManager	DihedralTable	OptPmeSubComputeMsg
Alg7	DihedralValue	OptPmeXPencil
AlgNbor	doublecomplex	OptPmeYPencil
AlgRecBisection	drude_constants	OptPmeZPencil
AlignVector	dummyData	Output
AnAngleRestraint	E	OutputAtomRecord
angle	eABF	OutputAtomRecord::floatVals
angle_params	eABF1D	OutputAtomRecord::integerVals
AngleElem	eABF2D	OutputAtomRecord::shortVals
AngleTable	Entry	OwnerBox
AngleValue	EntryGlob	P
aniso	EwaldParticle	Pairlists
AnisoElem	ExchangeAtomsMsg	PairTable
APosRestraint	ExchangeAtomsReqMsg	PAL
ARestraint	ExclElem	ParallelIOMgr
ARestraintManager	exclmask	Parameters
Array	ExclSigInfo	parm
Array (msm)	Exclusion	ParseOptions
assert_ProxyResultVarsizeMsg	ExclusionCheck	ParseOptions::DataElement
atom_constants	ExclusionSignature	Patch
atom_name_info	exlist_sortop	patch_sortop_curve_a
AtomCoord (msm)	ExtCoordMsg	patch_sortop_curve_b
AtomCstInfo	ExtForce	patch_sortop_curve_c
atomID_less	ExtForceMsg	PatchData (msm)
AtomMap	F	patchDataStrc
AtomMapper	FFTCompute	PatchDiagram (msm)
AtomNameIdx	FileStack	PatchElem
AtomsCntPerPatchMsg	FinishWorkMsg	PatchGridElem
AtomSigInfo	Flags	patchInfo
AtomSignature	float2	PatchInfo
AtomTable	floatcomplex	PatchMap
AVector	FloatVector	PatchMapMsg
B	FmmSerialCoordMsg	PatchMgr
BackEnd	FmmSerialForceMsg	PatchPairRecord
BasicAtomInfo	FoldFactor (msm)	PatchProxyListMsg
BlockDiagram (msm)	four_body_consts	PatchSend (msm)
BlockIndex (msm)	FullAtom	PDB
BlockSend (msm)	G	PDBAtom
BOCgroup	gather_t	PDBAtomRecord
BOID	GBISCoordMsg	PDBData
bond	GBISForceMsg	PDBHetatm
bond_params	GBISInput	PDBUnknown
BondElem	GBISInput< 1 >	pe_sortop_bit_reversed
BondTable	GBISInput< 2 >	pe_sortop_coord_x
BondValue	GBISInput< 3 >	pe_sortop_coord_y
BoundingBox	GBISParam	PencilElement
Box	GBISParam< 1 >	pid_sortop_reverse_priority
BroadcastClient	GBISParam< 2 >	PluginIOMgr
BroadcastClientElem	GBISParam< 3 >	PmeAckMsg
BroadcastMgr	GBISParamStruct	PmeAtomFiler
BroadcastMsg	GBISResults	PmeAtomMsg
C	GBISResults< 1 >	PmeAtomPencilMsg
C1Matrix	GBISResults< 2 >	PmeAtomStorage
C1Vector	GBISResults< 3 >	PmeBlockMsg
CBase_OptPmeXPencil	GenericAngle	PmeDoneMsg
CBase_OptPmeYPencil	GenericAtom	PmeEvirMsg
CBase_OptPmeZPencil	GenericBond	PmeFFTInfo
CBase_PmeXPencil	GenericDihedral	PmeForceMsg
CBase_PmeYPencil	GenericMol	PmeForcePencilMsg
CBase_PmeZPencil	GlobalMaster	PmeGrid
CheckpointAtomsMsg	GlobalMasterEasy	PmeGridMsg
CheckpointAtomsReqMsg	GlobalMasterFreeEnergy	PmeKSpace
CheckpointMsg	GlobalMasterIMD	PmeKSpaceCompute
CkCallbackWrapper	GlobalMasterMisc	PmeLaunchMsg
ClusterCoorElem	GlobalMasterServer	PmeParticle
ClusterCoorMsg	GlobalMasterSMD	PmePencil
ClusterElem	GlobalMasterSymmetry	PmePencilInitMsg
ClusterSizeMsg	GlobalMasterTcl	PmePencilInitMsgData
CollectionMaster	GlobalMasterTest	PmePencilMap
CollectionMaster::CollectVectorInstance	GlobalMasterTMD	PmePencilX
CollectionMaster::CollectVectorSequence	go_pair	PmePencilXMap
CollectionMgr	go_val	PmePencilXY
CollectionMgr::CollectVectorInstance	Grid (msm)	PmePencilXYMap
CollectionMgr::CollectVectorSequence	GridFixed (msm)	PmePencilXYZ
CollectLoadsMsg	GridforceFullBaseGrid	PmePencilXYZMap
CollectVectorMsg	GridforceFullBaseGrid::GridIndices	PmePencilY
CollectVectorVarMsg	GridforceFullMainGrid	PmePencilZ
colvarproxy_namd	GridforceFullSubGrid	PmeRealSpace
Communicate	GridforceGrid	PmeRealSpaceCompute
CompAtom	GridforceLiteGrid	PmeRunMsg
CompAtomExt	GridMsg	PmeSelfEnergyMsg
Compute	GroGaussPair	PmeSharedTransMsg
ComputeAngles	GroLJPair	PmeSharedUntransMsg
ComputeAniso	gromacsPair	PmeStartMsg
ComputeBondedCUDAKernel	GromacsPairElem	PmeTransMsg
ComputeBondedCUDAKernel::BondedVirial	GromacsPairValue	PmeTranspose
ComputeBonds	GromacsTopFile	PmeUntransMsg
ComputeConsForce	GroupInitMsg	PmeXPencil
ComputeConsForceMsg	H	PmeYPencil
ComputeConsTorque	HashPool	PmeZPencil
ComputeCrossterms	HashPoolAdaptorT	pntChrgDist
ComputeCUDAMgr	HashReal	Pointer
ComputeCylindricalBC	HashString	position_index
ComputeDihedrals	heapIterator	PressureProfileReduction
ComputeDPMEDataMsg	heapRecord	PriorityQueue (msm)
ComputeDPMEResultsMsg	HomePatch	processorInfo
ComputeEField	HomePatch::checkpoint_t	ProxyCombinedResultMsg
ComputeEwald	HomePatch::RattleList	ProxyCombinedResultRawMsg
ComputeEwaldMsg	HomePatchElem	ProxyDataMsg
ComputeExcls	HydroBasedMsg	ProxyElem
ComputeExt	HydrogenGroupID	ProxyGBISP1ResultMsg
ComputeExtAtom	I	ProxyGBISP2DataMsg
ComputeExtMgr	idIndxStr	ProxyGBISP2ResultMsg
ComputeFmmSerial	ijpair	ProxyGBISP3DataMsg
ComputeFmmSerialAtom	ijpair_sortop_bit_reversed	ProxyListInfo
ComputeFmmSerialMgr	IMDEnergies	ProxyMgr
ComputeFullDirect	IMDheader	ProxyNodeAwareSpanningTreeMsg
ComputeGBISAtom	IMDOutput	ProxyPatch
ComputeGBISser	improper	ProxyResultMsg
ComputeGBISserMgr	improper_params	ProxyResultVarsizeMsg
ComputeGlobal	ImproperElem	ProxySpanningTreeMsg
ComputeGlobalDataMsg	ImproperValue	ProxyTree
ComputeGlobalResultsMsg	indexed_nbthole_pair	proxyTreeNode
ComputeGridForce	indexed_table_pair	ProxyUsage
ComputeGromacsPair	indexed_vdw_pair	ProxyUsageKey
ComputeHomePatch	IndexRange (msm)	Q
ComputeHomePatches	InfoRecord	QMAtomData
ComputeHomeTuples	infostream	QMCoordMsg
ComputeImpropers	InitDeviceMsg	QMForce
computeInfo	InitDeviceMsg2	QMForceMsg
ComputeLCPO	InputAtom	QMGrpCalcMsg
ComputeMap	Int2	QMGrpResMsg
ComputeMap::ComputeData	Int3	QMPntChrgMsg
ComputeMap::PatchRec	InterpParams_t	qmSolvData
ComputeMapChangeMsg	intpair	R
ComputeMgr	IRSet	Random
ComputeMoa	Iterator	RattleParam
ComputeMsm	Ivec (msm)	Rebalancer
ComputeMsmMgr	L	Rebalancer::pcpair
ComputeMsmSerial	LargeIRSet	RecBisection
ComputeMsmSerialAtom	Lattice	RecipVirial_t
ComputeMsmSerialMgr	LCPOAtom	RecvDeviceMsg
ComputeNonbondedCUDA	LCPONeighborList	ReductionMgr
ComputeNonbondedCUDA::compute_record	LdbCoordinator	ReductionRegisterMsg
ComputeNonbondedCUDA::patch_record	LdbMigrateMsg	ReductionSet
ComputeNonbondedMIC	listNode	ReductionSetData
ComputeNonbondedMIC::compute_record	LJTable	ReductionSubmitMsg
ComputeNonbondedMIC::patch_record	LJTable::TableEntry	RefineOnly
ComputeNonbondedPair	LocalID	RefineTorusLB
ComputeNonbondedSelf	LocalLBInfoMsg	refSelStr
ComputeNonbondedUtil	LocalPmeInfo	RegisterPatchMsg
ComputeNonbondedWorkArrays	LocalWorkMsg	RegisterProxyMsg
ComputePatch	lphost	ReplicaDcdAckMsg
ComputePatchPair	LSSDataStr	ReplicaDcdDataMsg
ComputePme	lssDistSort	ReplicaDcdInitMsg
ComputePmeCUDA	LSSSubsDat	RequireReduction
ComputePmeCUDADevice	M	ResidueLookupElem
ComputePmeCUDAMgr	main	ResizeArray
ComputePmeMgr	Map (msm)	ResizeArrayIter
ComputePmeMgr::cuda_submit_charges_args	MathArray	ResizeArrayPrimIter
ComputePmeUtil	Matrix4	ResizeArrayRaw
ComputeQM	Matrix4Symmetry	Results
ComputeQMAtom	Matrix4TMD	S
ComputeQMMgr	maxHeap	ScriptParamMsg
ComputeQMPntChrg	Measure	ScriptTcl
ComputeRestraints	meMMQMGrp	seg_resid
ComputeSelfAngles	memusageinit	Sequencer
ComputeSelfAniso	MGridforceParams	SetLatticeMsg
ComputeSelfBonds	MGridforceParamsList	SimParameters
ComputeSelfCrossterms	MigrateAtomsCombinedMsg	SimpleBroadcastObject
ComputeSelfDihedrals	MigrateAtomsMsg	SlaveInitMsg
ComputeSelfExcls	MigrationInfo	SortableResizeArray
ComputeSelfGromacsPair	minHeap	SortedArray
ComputeSelfImpropers	minpoint	sortop_base
ComputeSelfThole	MIStream	sortop_bit_reversed
ComputeSelfTuples	MoaData	sortop_x
ComputeSphericalBC	Molecule	sortop_y
ComputeStir	MolInfoMsg	sortop_z
ComputeTclBC	MolInst	SplitComputesMsg
ComputeThole	MOStream	StreamMessage
ConfigList	MoveAllByMsg	StringList
ConfigList::ConfigListNode	MoveAtomMsg	SubmitReduction
ConstPointer	MoveInputAtomsMsg	Sync
Controller	MovePatch	T
Controller::checkpoint	MovePatchAtomsMsg	table_pair_params
ControllerBroadcasts	MovePatchesMsg	TaggedMsg
ControllerState	MsmBlock	Tensor
cptr_sortop_priority	MsmBlockKernel	thole
CpuPmeAtomStorage	MsmBlockMap	TholeElem
cr_sortop_distance	MsmBlockProxyMsg	TileExcl
cr_sortop_reverse_priority	MsmC1HermiteBlock	TileList
crossterm	MsmC1HermiteBlockProxyMsg	TileListStat
crossterm_params	MsmC1HermiteGridCutoff	TileListVirialEnergy
CrosstermData	MsmC1HermiteGridCutoffProxyMsg	TopoManagerWrapper
CrosstermElem	MsmC1HermiteGridCutoffSetupMsg	TopoManagerWrapper::pe_sortop_topo
CrosstermValue	MsmGridCutoff	TorusLB
cuda_args_t	MsmGridCutoffInitMsg	Transform
CudaAngle	MsmGridCutoffKernel	TransposeBatch
CudaAngleValue	MsmGridCutoffMap	TuplePatchElem
CudaAtom	MsmGridCutoffProxyMsg	TupleSignature
CudaBond	MsmGridCutoffSetupMsg	U
CudaBondValue	MsmInitMsg	UniqueSet
CudaComputeGBISKernel	MsmProfiler	UniqueSetIter
CudaComputeNonbonded	MsmSerialCoordMsg	UniqueSetRaw
CudaComputeNonbonded::ComputeRecord	MsmSerialForceMsg	UniqueSortedArray
CudaComputeNonbonded::PatchRecord	MsmTimer	UnregisterProxyMsg
CudaComputeNonbondedKernel	N	V
CudaComputeNonbondedMsg	NamdCentLB	vdw_pair_params
CudaComputeRecord	NamdDummyLB	vdw_params
CudaCrossterm	NamdHybridLB	vdw_val
CudaCrosstermValue	NamdNborLB	VDWTable
CudaDihedral	NamdState	vect
CudaDihedralValue	nbthole_pair_params	Vector
CudaExclusion	nbthole_pair_value	VirialEnergy
CudaFFTCompute	netint	vmdforce
CudaForce	NL_Msm_t	W
CudaNonbondedTables	Node	wkf_timer
CudaPatchRecord	NodePmeInfo	wkfmsgtimer
CudaPmeAtomStorage	NodePmeMgr	WorkDistrib
CudaPmeKSpaceCompute	NodeProxyMgr	WorkDistrib::pe_sortop_compact
CudaPmePencilX	nodesort	WorkDistrib::pe_sortop_diffuse
CudaPmePencilXY	nonbonded	WorkIndex
CudaPmePencilXYZ	NonbondedCUDASkipMsg	Z
CudaPmePencilY	NonbondedCUDASlaveMsg	zVector
CudaPmePencilZ	NonbondedExclValue	_
CudaPmeRealSpaceCompute	NonbondedMICSkipMsg	__sort_entry

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