NAMD Class Index

A	CudaPmeXInitMsg	NumDevicesMsg
ABoundAngleRestraint	CudaPmeXYInitMsg	O
ABoundDiheRestraint	CudaPmeXYZInitMsg	ObjectArena
ABoundDistRestraint	CudaStaticAssert< true >	ofstream_namd
ABoundPosRestraint	CudaTileListKernel	OptPmeCompute
ADiheRestraint	D	OptPmeDummyMsg
ADistRestraint	DataExchanger	OptPmeFFTMsg
AFixedAngleRestraint	DataMessage	OptPmeGridMsg
AFixedDiheRestraint	datastream	OptPmeMgr
AFixedDistRestraint	DataStreamMsg	OptPmePencil
AFixedPosRestraint	DeviceBuffer	OptPmePencilInitMsg
AForcingAngleRestraint	DeviceCUDA	OptPmePencilInitMsgData
AForcingDiheRestraint	DeviceDataMsg	OptPmePencilMapX
AForcingDistRestraint	dihedral	OptPmePencilMapY
AForcingPosRestraint	dihedral_params	OptPmePencilMapZ
AGroup	DihedralElem	OptPmeRealSpace
ALambdaControl	DihedralTable	OptPmeSubComputeMsg
ALambdaManager	DihedralValue	OptPmeXPencil
Alg7	doublecomplex	OptPmeYPencil
AlgNbor	drude_constants	OptPmeZPencil
AlgRecBisection	dummyData	Output
AlignVector	E	OutputAtomRecord
AnAngleRestraint	eABF	OutputAtomRecord::floatVals
angle	eABF1D	OutputAtomRecord::integerVals
angle_params	eABF2D	OutputAtomRecord::shortVals
AngleElem	Entry	OwnerBox
AngleTable	EntryGlob	P
AngleValue	EwaldParticle	Pairlists
aniso	ExchangeAtomsMsg	PairTable
AnisoElem	ExchangeAtomsReqMsg	PAL
APosRestraint	ExclElem	ParallelIOMgr
ARestraint	exclmask	Parameters
ARestraintManager	ExclSigInfo	parm
Array	Exclusion	ParseOptions
Array (msm)	ExclusionCheck	ParseOptions::DataElement
assert_ProxyResultVarsizeMsg	ExclusionSignature	Patch
atom_constants	exlist_sortop	patch_sortop_curve_a
atom_name_info	ExtCoordMsg	patch_sortop_curve_b
AtomCoord (msm)	ExtForce	patch_sortop_curve_c
AtomCstInfo	ExtForceMsg	PatchData (msm)
atomID_less	F	patchDataStrc
AtomMap	FFTCompute	PatchDiagram (msm)
AtomMapper	FileStack	PatchElem
AtomNameIdx	FinishWorkMsg	PatchGridElem
AtomsCntPerPatchMsg	Flags	patchInfo
AtomSigInfo	float2	PatchInfo
AtomSignature	floatcomplex	PatchMap
AtomTable	FloatVector	PatchMapMsg
AVector	FmmSerialCoordMsg	PatchMgr
B	FmmSerialForceMsg	PatchPairRecord
BackEnd	FoldFactor (msm)	PatchProxyListMsg
BasicAtomInfo	four_body_consts	PatchSend (msm)
BlockDiagram (msm)	FullAtom	PDB
BlockIndex (msm)	G	PDBAtom
BlockSend (msm)	gather_t	PDBAtomRecord
BOCgroup	GBISCoordMsg	PDBData
BOID	GBISForceMsg	PDBHetatm
bond	GBISInput	PDBUnknown
bond_params	GBISInput< 1 >	pe_sortop_bit_reversed
BondElem	GBISInput< 2 >	pe_sortop_coord_x
BondTable	GBISInput< 3 >	pe_sortop_coord_y
BondValue	GBISParam	PencilElement
BoundingBox	GBISParam< 1 >	pid_sortop_reverse_priority
Box	GBISParam< 2 >	PluginIOMgr
BroadcastClient	GBISParam< 3 >	PmeAckMsg
BroadcastClientElem	GBISParamStruct	PmeAtomFiler
BroadcastMgr	GBISResults	PmeAtomMsg
BroadcastMsg	GBISResults< 1 >	PmeAtomPencilMsg
C	GBISResults< 2 >	PmeAtomStorage
C1Matrix	GBISResults< 3 >	PmeBlockMsg
C1Vector	GenericAngle	PmeDoneMsg
CBase_OptPmeXPencil	GenericAtom	PmeEvirMsg
CBase_OptPmeYPencil	GenericBond	PmeFFTInfo
CBase_OptPmeZPencil	GenericDihedral	PmeForceMsg
CBase_PmeXPencil	GenericMol	PmeForcePencilMsg
CBase_PmeYPencil	GlobalMaster	PmeGrid
CBase_PmeZPencil	GlobalMasterEasy	PmeGridMsg
CheckpointAtomsMsg	GlobalMasterFreeEnergy	PmeKSpace
CheckpointAtomsReqMsg	GlobalMasterIMD	PmeKSpaceCompute
CheckpointMsg	GlobalMasterMisc	PmeLaunchMsg
CkCallbackWrapper	GlobalMasterServer	PmeParticle
ClusterCoorElem	GlobalMasterSMD	PmePencil
ClusterCoorMsg	GlobalMasterSymmetry	PmePencilInitMsg
ClusterElem	GlobalMasterTcl	PmePencilInitMsgData
ClusterSizeMsg	GlobalMasterTest	PmePencilMap
CollectionMaster	GlobalMasterTMD	PmePencilX
CollectionMaster::CollectVectorInstance	go_pair	PmePencilXMap
CollectionMaster::CollectVectorSequence	go_val	PmePencilXY
CollectionMgr	Grid (msm)	PmePencilXYMap
CollectionMgr::CollectVectorInstance	GridFixed (msm)	PmePencilXYZ
CollectionMgr::CollectVectorSequence	GridforceFullBaseGrid	PmePencilXYZMap
CollectLoadsMsg	GridforceFullBaseGrid::GridIndices	PmePencilY
CollectVectorMsg	GridforceFullMainGrid	PmePencilZ
CollectVectorVarMsg	GridforceFullSubGrid	PmeRealSpace
colvarproxy_namd	GridforceGrid	PmeRealSpaceCompute
Communicate	GridforceLiteGrid	PmeRunMsg
CompAtom	GridMsg	PmeSelfEnergyMsg
CompAtomExt	GroGaussPair	PmeSharedTransMsg
Compute	GroLJPair	PmeSharedUntransMsg
ComputeAngles	gromacsPair	PmeStartMsg
ComputeAniso	GromacsPairElem	PmeTransMsg
ComputeBondedCUDAKernel	GromacsPairValue	PmeTranspose
ComputeBondedCUDAKernel::BondedVirial	GromacsTopFile	PmeUntransMsg
ComputeBonds	GroupInitMsg	PmeXPencil
ComputeConsForce	H	PmeYPencil
ComputeConsForceMsg	HashPool	PmeZPencil
ComputeConsTorque	HashPoolAdaptorT	pntChrgDist
ComputeCrossterms	HashReal	Pointer
ComputeCUDAMgr	HashString	position_index
ComputeCylindricalBC	heapIterator	PressureProfileReduction
ComputeDihedrals	heapRecord	PriorityQueue (msm)
ComputeDPMEDataMsg	HomePatch	processorInfo
ComputeDPMEResultsMsg	HomePatch::checkpoint_t	ProxyCombinedResultMsg
ComputeEField	HomePatch::RattleList	ProxyCombinedResultRawMsg
ComputeEwald	HomePatchElem	ProxyDataMsg
ComputeEwaldMsg	HydroBasedMsg	ProxyElem
ComputeExcls	HydrogenGroupID	ProxyGBISP1ResultMsg
ComputeExt	I	ProxyGBISP2DataMsg
ComputeExtAtom	idIndxStr	ProxyGBISP2ResultMsg
ComputeExtMgr	ijpair	ProxyGBISP3DataMsg
ComputeFmmSerial	ijpair_sortop_bit_reversed	ProxyListInfo
ComputeFmmSerialAtom	IMDEnergies	ProxyMgr
ComputeFmmSerialMgr	IMDheader	ProxyNodeAwareSpanningTreeMsg
ComputeFullDirect	IMDOutput	ProxyPatch
ComputeGBISAtom	improper	ProxyResultMsg
ComputeGBISser	improper_params	ProxyResultVarsizeMsg
ComputeGBISserMgr	ImproperElem	ProxySpanningTreeMsg
ComputeGlobal	ImproperValue	ProxyTree
ComputeGlobalDataMsg	indexed_nbthole_pair	proxyTreeNode
ComputeGlobalResultsMsg	indexed_table_pair	ProxyUsage
ComputeGridForce	indexed_vdw_pair	ProxyUsageKey
ComputeGromacsPair	IndexRange (msm)	Q
ComputeHomePatch	InfoRecord	QMAtomData
ComputeHomePatches	infostream	QMCoordMsg
ComputeHomeTuples	InitDeviceMsg	QMForce
ComputeImpropers	InitDeviceMsg2	QMForceMsg
computeInfo	InputAtom	QMGrpCalcMsg
ComputeLCPO	Int2	QMGrpResMsg
ComputeMap	Int3	QMPntChrgMsg
ComputeMap::ComputeData	InterpParams_t	qmSolvData
ComputeMap::PatchRec	intpair	R
ComputeMapChangeMsg	IRSet	Random
ComputeMapMsg	Iterator	RattleParam
ComputeMgr	Ivec (msm)	Rebalancer
ComputeMoa	L	Rebalancer::pcpair
ComputeMsm	LargeIRSet	RecBisection
ComputeMsmMgr	Lattice	RecipVirial_t
ComputeMsmSerial	LCPOAtom	RecvDeviceMsg
ComputeMsmSerialAtom	LCPONeighborList	ReductionMgr
ComputeMsmSerialMgr	LdbCoordinator	ReductionRegisterMsg
ComputeNonbondedCUDA	LdbMigrateMsg	ReductionSet
ComputeNonbondedCUDA::compute_record	listNode	ReductionSetData
ComputeNonbondedCUDA::patch_record	LJTable	ReductionSubmitMsg
ComputeNonbondedMIC	LJTable::TableEntry	RefineOnly
ComputeNonbondedMIC::compute_record	LocalID	RefineTorusLB
ComputeNonbondedMIC::patch_record	LocalLBInfoMsg	refSelStr
ComputeNonbondedPair	LocalPmeInfo	RegisterPatchMsg
ComputeNonbondedSelf	LocalWorkMsg	RegisterProxyMsg
ComputeNonbondedUtil	lphost	ReplicaDcdAckMsg
ComputeNonbondedWorkArrays	LSSDataStr	ReplicaDcdDataMsg
ComputePatch	lssDistSort	ReplicaDcdInitMsg
ComputePatchPair	LSSSubsDat	RequireReduction
ComputePme	M	ResidueLookupElem
ComputePmeCUDA	main	ResizeArray
ComputePmeCUDADevice	Map (msm)	ResizeArrayIter
ComputePmeCUDAMgr	MathArray	ResizeArrayPrimIter
ComputePmeMgr	Matrix4	ResizeArrayRaw
ComputePmeMgr::cuda_submit_charges_args	Matrix4Symmetry	Results
ComputeQM	Matrix4TMD	S
ComputeQMAtom	maxHeap	ScriptParamMsg
ComputeQMMgr	Measure	ScriptTcl
ComputeQMPntChrg	meMMQMGrp	seg_resid
ComputeRestraints	memusageinit	Sequencer
ComputeSelfAngles	MGridforceParams	SetLatticeMsg
ComputeSelfAniso	MGridforceParamsList	SimParameters
ComputeSelfBonds	MigrateAtomsCombinedMsg	SimpleBroadcastObject
ComputeSelfCrossterms	MigrateAtomsMsg	SlaveInitMsg
ComputeSelfDihedrals	MigrationInfo	SortableResizeArray
ComputeSelfExcls	minHeap	SortedArray
ComputeSelfGromacsPair	minpoint	sortop_base
ComputeSelfImpropers	MIStream	sortop_bit_reversed
ComputeSelfThole	MoaData	sortop_x
ComputeSelfTuples	Molecule	sortop_y
ComputeSphericalBC	MolInfoMsg	sortop_z
ComputeStir	MolInst	SplitComputesMsg
ComputeTclBC	MOStream	StreamMessage
ComputeThole	MoveAllByMsg	StringList
ConfigList	MoveAtomMsg	SubmitReduction
ConfigList::ConfigListNode	MoveInputAtomsMsg	Sync
Controller	MovePatch	T
Controller::checkpoint	MovePatchAtomsMsg	table_pair_params
ControllerBroadcasts	MovePatchesMsg	TaggedMsg
ControllerState	MsmBlock	Tensor
cptr_sortop_priority	MsmBlockKernel	thole
CpuPmeAtomStorage	MsmBlockMap	TholeElem
cr_sortop_distance	MsmBlockProxyMsg	TileExcl
cr_sortop_reverse_priority	MsmC1HermiteBlock	TileList
crossterm	MsmC1HermiteBlockProxyMsg	TileListStat
crossterm_params	MsmC1HermiteGridCutoff	TileListVirialEnergy
CrosstermData	MsmC1HermiteGridCutoffProxyMsg	TopoManagerWrapper
CrosstermElem	MsmC1HermiteGridCutoffSetupMsg	TopoManagerWrapper::pe_sortop_topo
CrosstermValue	MsmGridCutoff	TorusLB
cuda_args_t	MsmGridCutoffInitMsg	Transform
CudaAngle	MsmGridCutoffKernel	TransposeBatch
CudaAngleValue	MsmGridCutoffMap	TuplePatchElem
CudaAtom	MsmGridCutoffProxyMsg	TupleSignature
CudaBond	MsmGridCutoffSetupMsg	U
CudaBondValue	MsmInitMsg	UniqueSet
CudaComputeGBISKernel	MsmProfiler	UniqueSetIter
CudaComputeNonbonded	MsmSerialCoordMsg	UniqueSetRaw
CudaComputeNonbonded::ComputeRecord	MsmSerialForceMsg	UniqueSortedArray
CudaComputeNonbonded::PatchRecord	MsmTimer	UnregisterProxyMsg
CudaComputeNonbondedKernel	N	V
CudaComputeNonbondedMsg	NamdCentLB	vdw_pair_params
CudaComputeRecord	NamdDummyLB	vdw_params
CudaCrossterm	NamdHybridLB	vdw_val
CudaCrosstermValue	NamdNborLB	VDWTable
CudaDihedral	NamdState	vect
CudaDihedralValue	nbthole_pair_params	Vector
CudaExclusion	nbthole_pair_value	VirialEnergy
CudaFFTCompute	netint	vmdforce
CudaForce	NL_Msm_t	W
CudaNonbondedTables	Node	wkf_timer
CudaPatchRecord	NodePmeInfo	wkfmsgtimer
CudaPmeAtomStorage	NodePmeMgr	WorkDistrib
CudaPmeKSpaceCompute	NodeProxyMgr	WorkDistrib::pe_sortop_compact
CudaPmePencilX	nodesort	WorkDistrib::pe_sortop_diffuse
CudaPmePencilXY	nonbonded	WorkIndex
CudaPmePencilXYZ	NonbondedCUDASkipMsg	Z
CudaPmePencilY	NonbondedCUDASlaveMsg	zVector
CudaPmePencilZ	NonbondedExclValue	_
CudaPmeRealSpaceCompute	NonbondedMICSkipMsg	__sort_entry
CudaPmeTranspose	NonbondedMICSlaveMsg

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