NAMD Class Index

_	ComputeMsmSerial	MsmSerialForceMsg
__sort_entry	ComputeMsmSerialAtom	N
A	ComputeMsmSerialMgr	NamdCentLB
ABoundAngleRestraint	ComputeNonbondedCUDA	NamdDummyLB
ABoundDiheRestraint	ComputeNonbondedCUDA::compute_record	NamdHybridLB
ABoundDistRestraint	ComputeNonbondedCUDA::patch_record	NamdNborLB
ABoundPosRestraint	ComputeNonbondedPair	NamdState
ADiheRestraint	ComputeNonbondedSelf	nbthole_pair_params
ADistRestraint	ComputeNonbondedUtil	nbthole_pair_value
AFixedAngleRestraint	ComputeNonbondedWorkArrays	netint
AFixedDiheRestraint	ComputePatch	NL_Msm_t
AFixedDistRestraint	ComputePatchPair	Node
AFixedPosRestraint	ComputePme	NodePmeInfo
AForcingAngleRestraint	ComputePmeMgr	NodePmeMgr
AForcingDiheRestraint	ComputeRestraints	NodeProxyMgr
AForcingDistRestraint	ComputeSelfAngles	nodesort
AForcingPosRestraint	ComputeSelfAniso	nonbonded
AGroup	ComputeSelfBonds	NonbondedCUDASlaveMsg
ALambdaControl	ComputeSelfCrossterms	NonbondedExclValue
ALambdaManager	ComputeSelfDihedrals	O
Alg7	ComputeSelfExcls	ObjectArena
AlgNbor	ComputeSelfImpropers	OptPmeCompute
AlgRecBisection	ComputeSelfThole	OptPmeDummyMsg
AlignVector	ComputeSelfTuples	OptPmeFFTMsg
AnAngleRestraint	ComputeSphericalBC	OptPmeGridMsg
angle	ComputeStir	OptPmeMgr
angle_params	ComputeTclBC	OptPmePencil
AngleElem	ComputeThole	OptPmePencilInitMsg
AngleTable	ConfigList	OptPmePencilInitMsgData
AngleValue	ConfigList::ConfigListNode	OptPmePencilMapX
aniso	Controller	OptPmePencilMapY
AnisoElem	ControllerBroadcasts	OptPmePencilMapZ
APosRestraint	cr_sortop	OptPmeRealSpace
ARestraint	crossterm	OptPmeXPencil
ARestraintManager	crossterm_params	OptPmeYPencil
Array	CrosstermData	OptPmeZPencil
atom_constants	CrosstermElem	Output
atom_name_info	CrosstermValue	OutputAtomRecord
AtomCstInfo	CudaAtom	OutputAtomRecord::floatVals
atomID_less	D	OutputAtomRecord::integerVals
AtomMap	datastream	OutputAtomRecord::shortVals
AtomMapper	DataStreamMsg	OwnerBox
AtomNameIdx	dihedral	P
AtomsCntPerPatchMsg	dihedral_params	Pairlists
AtomSigInfo	DihedralElem	PAL
AtomSignature	DihedralTable	ParallelIOMgr
AtomTable	DihedralValue	Parameters
AVector	doublecomplex	parm
B	drude_constants	ParseOptions
BackEnd	E	ParseOptions::DataElement
BasicAtomInfo	Entry	Patch
BOCclass	EntryGlob	PatchElem
BOCgroup	EwaldParticle	PatchGridElem
BOID	ExclElem	patchInfo
bond	ExclSigInfo	PatchMap
bond_params	Exclusion	PatchMapMsg
BondElem	ExclusionCheck	PatchMgr
BondTable	ExclusionSignature	PatchProxyListMsg
BondValue	exlist_sortop	PDB
Box	ExtCoordMsg	PDBAtom
BroadcastClient	ExtForce	PDBAtomRecord
BroadcastClientElem	ExtForceMsg	PDBData
BroadcastMgr	F	PDBHetatm
BroadcastMsg	FileStack	PDBUnknown
C	Flags	PencilElement
CBase_OptPmeXPencil	floatcomplex	PluginIOMgr
CBase_OptPmeYPencil	FloatVector	PmeAckMsg
CBase_OptPmeZPencil	four_body_consts	PmeFFTInfo
CBase_PmeXPencil	FullAtom	PmeGrid
CBase_PmeYPencil	G	PmeGridMsg
CBase_PmeZPencil	GBISCoordMsg	PmeKSpace
CkCallbackWrapper	GBISForceMsg	PmeParticle
ClusterCoorElem	GBISParamStruct	PmePencil
ClusterCoorMsg	GenericAngle	PmePencilInitMsg
ClusterElem	GenericAtom	PmePencilInitMsgData
ClusterSizeMsg	GenericBond	PmePencilMap
CollectionMaster	GenericDihedral	PmeRealSpace
CollectionMaster::CollectVectorInstance	GenericMol	PmeSharedTransMsg
CollectionMaster::CollectVectorSequence	GlobalMaster	PmeSharedUntransMsg
CollectionMgr	GlobalMasterEasy	PmeTransMsg
CollectionMgr::CollectVectorInstance	GlobalMasterFreeEnergy	PmeUntransMsg
CollectionMgr::CollectVectorSequence	GlobalMasterIMD	PmeXPencil
CollectVectorMsg	GlobalMasterMisc	PmeYPencil
CollectVectorVarMsg	GlobalMasterServer	PmeZPencil
colvar	GlobalMasterSMD	position_index
colvar::alpha_angles	GlobalMasterSymmetry	PressureProfileReduction
colvar::angle	GlobalMasterTcl	processorInfo
colvar::coordnum	GlobalMasterTest	ProxyCombinedResultMsg
colvar::cvc	GlobalMasterTMD	ProxyCombinedResultRawMsg
colvar::dihedPC	go_val	ProxyDataMsg
colvar::dihedral	GridforceFullBaseGrid	ProxyElem
colvar::distance	GridforceFullBaseGrid::GridIndices	ProxyGBISP1ResultMsg
colvar::distance_dir	GridforceFullMainGrid	ProxyGBISP2DataMsg
colvar::distance_vec	GridforceFullSubGrid	ProxyGBISP2ResultMsg
colvar::distance_xy	GridforceGrid	ProxyGBISP3DataMsg
colvar::distance_z	GridforceLiteGrid	ProxyListInfo
colvar::eigenvector	GromacsTopFile	ProxyMgr
colvar::gyration	GroupInitMsg	ProxyNodeAwareSpanningTreeMsg
colvar::h_bond	H	ProxyPatch
colvar::logmsd	HashPool	ProxyResultMsg
colvar::min_distance	HashPoolAdaptorT	ProxyResultVarsizeMsg
colvar::orientation	HashReal	ProxySpanningTreeMsg
colvar::orientation_angle	HashString	ProxyTree
colvar::rmsd	heapIterator	proxyTreeNode
colvar::selfcoordnum	heapRecord	ProxyUsage
colvar::spin_angle	HomePatch	ProxyUsageKey
colvar::tilt	HomePatchElem	R
colvar_grid	HydroBasedMsg	Random
colvar_grid_count	HydrogenGroupID	Rebalancer
colvar_grid_gradient	I	Rebalancer::pcpair
colvar_grid_scalar	ijpair	RecBisection
colvarbias	IMDEnergies	ReductionMgr
colvarbias_abf	IMDheader	ReductionRegisterMsg
colvarbias_harmonic	IMDOutput	ReductionSet
colvarbias_histogram	improper	ReductionSetData
colvarbias_meta	improper_params	ReductionSubmitMsg
colvarbias_meta::hill	ImproperElem	RefineOnly
colvarmodule	ImproperValue	RefineTorusLB
colvarmodule::atom	indexed_nbthole_pair	RegisterProxyMsg
colvarmodule::atom_group	indexed_table_pair	RequireReduction
colvarmodule::matrix2d	indexed_vdw_pair	ResidueLookupElem
colvarmodule::quaternion	InfoRecord	ResizeArray
colvarmodule::rmatrix	infostream	ResizeArrayIter
colvarmodule::rotation	InputAtom	ResizeArrayPrimIter
colvarmodule::rvector	Int2	ResizeArrayRaw
colvarmodule::vector1d	Int3	Results
colvarparse	InterpParams_t	S
colvarparse::read_block	IRSet	ScriptParamMsg
colvarproxy	Iterator	ScriptTcl
colvarproxy_namd	L	seg_resid
colvarvalue	LargeIRSet	Sequencer
Communicate	Lattice	SetLatticeMsg
CompAtom	LCPOAtom	SimParameters
CompAtomExt	LCPONeighborList	SimpleBroadcastObject
Compute	LdbCoordinator	SlaveInitMsg
ComputeAngles	LdbMigrateMsg	SortableResizeArray
ComputeAniso	listNode	SortedArray
ComputeBonds	LJTable	sortop_base
ComputeConsForce	LJTable::TableEntry	sortop_x
ComputeConsForceMsg	LocalID	sortop_y
ComputeConsTorque	LocalLBInfoMsg	sortop_z
ComputeCrossterms	LocalPmeInfo	StreamMessage
ComputeCylindricalBC	LocalWorkMsg	StringList
ComputeDihedrals	lphost	SubmitReduction
ComputeDPMEDataMsg	M	Sync
ComputeDPMEResultsMsg	main	T
ComputeEField	MathArray	table_pair_params
ComputeEwald	Matrix4	TaggedMsg
ComputeEwaldMsg	Matrix4Symmetry	Tensor
ComputeExcls	Matrix4TMD	thole
ComputeExt	maxHeap	TholeElem
ComputeExtAtom	Measure	TorusLB
ComputeExtMgr	memusageinit	Transform
ComputeFullDirect	MGridforceParams	TuplePatchElem
ComputeGBISAtom	MGridforceParamsList	TupleSignature
ComputeGBISser	MigrateAtomsCombinedMsg	U
ComputeGBISserMgr	MigrateAtomsMsg	UniqueSet
ComputeGlobal	MigrationInfo	UniqueSetIter
ComputeGlobalDataMsg	minHeap	UniqueSetRaw
ComputeGlobalResultsMsg	minpoint	UniqueSortedArray
ComputeGridForce	MIStream	UnregisterProxyMsg
ComputeHomePatch	MoaData	V
ComputeHomePatches	Molecule	vdw_pair_params
ComputeHomeTuples	MolInfoMsg	vdw_params
ComputeImpropers	MolInst	vdw_val
computeInfo	MOStream	VDWTable
ComputeLCPO	MoveAllByMsg	vect
ComputeMap	MoveAtomMsg	Vector
ComputeMap::ComputeData	MoveInputAtomsMsg	vmdforce
ComputeMap::PatchRec	MovePatch	W
ComputeMapChangeMsg	MovePatchAtomsMsg	wkf_timer
ComputeMapMsg	MovePatchesMsg	wkfmsgtimer
ComputeMgr	MsmData	WorkDistrib
ComputeMoa	MsmInitMsg	Z
ComputeMsm	MsmSerialCoordMsg	zVector
ComputeMsmMgr

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