Class Index

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A	CudaStaticAssert	NodeProxyMgr
	CudaStaticAssert< true >	nodesort
ABoundAngleRestraint	CudaTileListKernel	nonbonded
ABoundDiheRestraint	D	NonbondedCUDASkipMsg
ABoundDistRestraint		NonbondedCUDASlaveMsg
ABoundPosRestraint	ParseOptions::DataElement	NonbondedExclValue
ADiheRestraint	DataExchanger	NonbondedMICSkipMsg
ADistRestraint	DataMessage	NonbondedMICSlaveMsg
AFixedAngleRestraint	datastream	NumDevicesMsg
AFixedDiheRestraint	DataStreamMsg	O
AFixedDistRestraint	DeviceBuffer
AFixedPosRestraint	DeviceCUDA	ObjectArena
AForcingAngleRestraint	DeviceDataMsg	ofstream_namd
AForcingDiheRestraint	dihedral	Output
AForcingDistRestraint	dihedral_params	OutputAtomRecord
AForcingPosRestraint	DihedralElem	OwnerBox
AGroup	DihedralTable	P
ALambdaControl	DihedralValue
ALambdaManager	doublecomplex	Pairlists
Alg7	drude_constants	PairTable
AlgNbor	dummyData	PAL
AlgRecBisection	E	ParallelIOMgr
AlignVector		Parameters
Ambertoppar (AmberParm7Reader)	eABF	parm
AnAngleRestraint	eABF1D	ParseOptions
angle	eABF2D	Patch
angle_params	Entry	ComputeNonbondedMIC::patch_record
AngleElem	EntryGlob	ComputeNonbondedCUDA::patch_record
AngleTable	EwaldParticle	patch_sortop_curve_a
AngleValue	ExchangeAtomsMsg	patch_sortop_curve_b
aniso	ExchangeAtomsReqMsg	patch_sortop_curve_c
AnisoElem	ExclElem	PatchData (msm)
APosRestraint	exclmask	patchDataStrc
ARestraint	ExclSigInfo	PatchDiagram (msm)
ARestraintManager	Exclusion	PatchElem
Array	ExclusionCheck	patchInfo
Array (msm)	ExclusionSignature	PatchInfo
assert_ProxyResultVarsizeMsg	exlist_sortop	PatchMap
atom_constants	ExtCoordMsg	PatchMapMsg
atom_name_info	ExtForce	PatchMgr
AtomCoord (msm)	ExtForceMsg	PatchPairRecord
AtomCstInfo	F	PatchProxyListMsg
atomID_less		ComputeMap::PatchRec
AtomMap	FFTCompute	CudaComputeNonbonded::PatchRecord
AtomMapper	FileStack	PatchSend (msm)
AtomNameIdx	FinishWorkMsg	Rebalancer::pcpair
AtomsCntPerPatchMsg	Flags	PDB
AtomSigInfo	float2	PDBAtom
AtomSignature	floatcomplex	PDBAtomRecord
AtomTable	OutputAtomRecord::floatVals	PDBData
AVector	FloatVector	PDBHetatm
B	FmmSerialCoordMsg	PDBUnknown
	FmmSerialForceMsg	pe_sortop_bit_reversed
BackEnd	FoldFactor (msm)	WorkDistrib::pe_sortop_compact
BasicAtomInfo	FortranData (AmberParm7Reader)	pe_sortop_coord_x
BlockDiagram (msm)	FortranFormatSpecifier (AmberParm7Reader)	pe_sortop_coord_y
BlockIndex (msm)	four_body_consts	WorkDistrib::pe_sortop_diffuse
BlockSend (msm)	FullAtom	TopoManagerWrapper::pe_sortop_topo
BOCgroup	G	pid_sortop_reverse_priority
BOID		PluginIOMgr
bond	gather_t	PmeAckMsg
bond_params	GBISCoordMsg	PmeAtomFiler
ComputeBondedCUDAKernel::BondedVirial	GBISForceMsg	PmeAtomMsg
BondElem	GBISInput	PmeAtomPencilMsg
BondTable	GBISInput< 1 >	PmeAtomStorage
BondValue	GBISInput< 2 >	PmeBlockMsg
BoundingBox	GBISInput< 3 >	PmeDoneMsg
Box	GBISParam	PmeEvirMsg
BroadcastClient	GBISParam< 1 >	PmeForceMsg
BroadcastClientElem	GBISParam< 2 >	PmeForcePencilMsg
BroadcastMgr	GBISParam< 3 >	PmeGrid
BroadcastMsg	GBISParamStruct	PmeGridMsg
C	GBISResults	PmeKSpace
	GBISResults< 1 >	PmeKSpaceCompute
C1Matrix	GBISResults< 2 >	PmeLaunchMsg
C1Vector	GBISResults< 3 >	PmeParticle
Controller::checkpoint	GenericAngle	PmePencil
HomePatch::checkpoint_t	GenericAtom	PmePencilInitMsg
CheckpointAtomsMsg	GenericBond	PmePencilInitMsgData
CheckpointAtomsReqMsg	GenericDihedral	PmePencilMap
CheckpointMsg	GenericMol	PmePencilX
CkPrintf_stringbuf	GlobalMaster	PmePencilXMap
ClusterCoorElem	GlobalMasterEasy	PmePencilXY
ClusterCoorMsg	GlobalMasterFreeEnergy	PmePencilXYMap
ClusterElem	GlobalMasterIMD	PmePencilXYZ
ClusterSizeMsg	GlobalMasterMisc	PmePencilXYZMap
CollectionMaster	GlobalMasterServer	PmePencilY
CollectionMgr	GlobalMasterSMD	PmePencilZ
CollectLoadsMsg	GlobalMasterSymmetry	PmeRealSpace
CollectProxyVectorInstance	GlobalMasterTcl	PmeRealSpaceCompute
CollectProxyVectorSequence	GlobalMasterTest	PmeRunMsg
CollectionMgr::CollectVectorInstance	GlobalMasterTMD	PmeSharedTransMsg
CollectionMaster::CollectVectorInstance	go_pair	PmeSharedUntransMsg
CollectVectorMsg	go_val	PmeStartMsg
CollectionMaster::CollectVectorSequence	Grid (msm)	PmeTransMsg
CollectionMgr::CollectVectorSequence	GridFixed (msm)	PmeTranspose
CollectVectorVarMsg	GridforceFullBaseGrid	PmeUntransMsg
colvarproxy_namd	GridforceFullMainGrid	PmeXPencil
Communicate	GridforceFullSubGrid	PmeYPencil
CompAtom	GridforceGrid	PmeZPencil
CompAtomExt	GridforceLiteGrid	pntChrgDist
Compute	GridforceFullBaseGrid::GridIndices	Pointer
ComputeNonbondedMIC::compute_record	GridMsg	position_index
ComputeNonbondedCUDA::compute_record	GroGaussPair	PressureProfileReduction
ComputeAngles	GroLJPair	PriorityQueue (msm)
ComputeAniso	gromacsPair	processorInfo
ComputeBondedCUDAKernel	GromacsPairElem	ProxyCombinedResultMsg
ComputeBonds	GromacsPairValue	ProxyCombinedResultRawMsg
ComputeConsForce	GromacsTopFile	ProxyDataMsg
ComputeConsForceMsg	GroupInitMsg	ProxyElem
ComputeConsTorque	H	ProxyGBISP1ResultMsg
ComputeCrossterms		ProxyGBISP2DataMsg
ComputeCUDAMgr	HashPool	ProxyGBISP2ResultMsg
ComputeCylindricalBC	HashPoolAdaptorT	ProxyGBISP3DataMsg
ComputeMap::ComputeData	HashReal	ProxyListInfo
ComputeDihedrals	HashString	ProxyMgr
ComputeDPMEDataMsg	heapIterator	ProxyNodeAwareSpanningTreeMsg
ComputeDPMEResultsMsg	heapRecord	ProxyPatch
ComputeEField	HomePatch	ProxyResultMsg
ComputeEwald	HomePatchElem	ProxyResultVarsizeMsg
ComputeEwaldMsg	HydroBasedMsg	ProxySpanningTreeMsg
ComputeExcls	HydrogenGroupID	ProxyTree
ComputeExt	I	proxyTreeNode
ComputeExtAtom		ProxyUsage
ComputeExtMgr	idIndxStr	ProxyUsageKey
ComputeFmmSerial	ijpair	Q
ComputeFmmSerialAtom	ijpair_sortop_bit_reversed
ComputeFmmSerialMgr	IMDEnergies	QMAtomData
ComputeFullDirect	IMDheader	QMCoordMsg
ComputeGBISAtom	IMDOutput	QMForce
ComputeGBISser	improper	QMForceMsg
ComputeGBISserMgr	improper_params	QMGrpCalcMsg
ComputeGlobal	ImproperElem	QMGrpResMsg
ComputeGlobalDataMsg	ImproperValue	QMPntChrgMsg
ComputeGlobalResultsMsg	indexed_nbthole_pair	qmSolvData
ComputeGridForce	indexed_table_pair	R
ComputeGromacsPair	indexed_vdw_pair
ComputeHomePatch	IndexRange (msm)	Random
ComputeHomePatches	InfoRecord	HomePatch::RattleList
ComputeHomeTuples	infostream	RattleParam
ComputeImpropers	InitDeviceMsg	Rebalancer
computeInfo	InitDeviceMsg2	RecBisection
ComputeLCPO	InputAtom	RecipVirial_t
ComputeMap	Int2	RecvDeviceMsg
ComputeMapChangeMsg	Int3	ReductionMgr
ComputeMgr	OutputAtomRecord::integerVals	ReductionRegisterMsg
ComputeMoa	InterpParams_t	ReductionSet
ComputeMsm	intpair	ReductionSetData
ComputeMsmMgr	IRSet	ReductionSubmitMsg
ComputeMsmSerial	Iterator	RefineOnly
ComputeMsmSerialAtom	Ivec (msm)	RefineTorusLB
ComputeMsmSerialMgr	L	refSelStr
ComputeNonbondedCUDA		RegisterPatchMsg
ComputeNonbondedMIC	LargeIRSet	RegisterProxyMsg
ComputeNonbondedPair	Lattice	ReplicaDcdAckMsg
ComputeNonbondedSelf	LCPOAtom	ReplicaDcdDataMsg
ComputeNonbondedUtil	LCPONeighborList	ReplicaDcdInitMsg
ComputeNonbondedWorkArrays	LdbCoordinator	RequireReduction
ComputePatch	LdbMigrateMsg	ResidueLookupElem
ComputePatchPair	listNode	ResizeArray
ComputePme	LJTable	ResizeArrayIter
ComputePmeCUDA	LocalID	ResizeArrayPrimIter
ComputePmeCUDADevice	LocalLBInfoMsg	ResizeArrayRaw
ComputePmeCUDAMgr	LocalPmeInfo	Results
ComputePmeMgr	LocalWorkMsg	S
ComputePmeUtil	lphost
ComputeQM	LSSDataStr	ScriptParamMsg
ComputeQMAtom	lssDistSort	ScriptTcl
ComputeQMMgr	LSSSubsDat	seg_resid
ComputeQMPntChrg	M	Sequencer
CudaComputeNonbonded::ComputeRecord		SetLatticeMsg
ComputeRestraints	main	OutputAtomRecord::shortVals
ComputeSelfAngles	Map (msm)	SimParameters
ComputeSelfAniso	MathArray	SimpleBroadcastObject
ComputeSelfBonds	Matrix4	SlaveInitMsg
ComputeSelfCrossterms	Matrix4Symmetry	SortableResizeArray
ComputeSelfDihedrals	Matrix4TMD	SortedArray
ComputeSelfExcls	maxHeap	sortop_base
ComputeSelfGromacsPair	Measure	sortop_bit_reversed
ComputeSelfImpropers	meMMQMGrp	sortop_x
ComputeSelfThole	memusageinit	sortop_y
ComputeSelfTuples	MGridforceParams	sortop_z
ComputeSphericalBC	MGridforceParamsList	SplitComputesMsg
ComputeStir	MigrateAtomsCombinedMsg	StreamMessage
ComputeTclBC	MigrateAtomsMsg	StringList
ComputeThole	MigrationInfo	SubmitReduction
ConfigList	minHeap	Sync
ConfigList::ConfigListNode	minpoint	T
ConstPointer	MIStream
Controller	MoaData	table_pair_params
ControllerBroadcasts	Molecule	LJTable::TableEntry
ControllerState	MolInfoMsg	TaggedMsg
cptr_sortop_priority	MolInst	Tensor
CpuPmeAtomStorage	MOStream	thole
cr_sortop_distance	MoveAllByMsg	TholeElem
cr_sortop_reverse_priority	MoveAtomMsg	TileExcl
crossterm	MoveInputAtomsMsg	TileList
crossterm_params	MovePatch	TileListStat
CrosstermData	MovePatchAtomsMsg	TileListVirialEnergy
CrosstermElem	MovePatchesMsg	TopoManagerWrapper
CrosstermValue	MsmBlock	TorusLB
cuda_args_t	MsmBlockKernel	Transform
ComputePmeMgr::cuda_submit_charges_args	MsmBlockMap	TransposeBatch
CudaAngle	MsmBlockProxyMsg	TuplePatchElem
CudaAngleValue	MsmC1HermiteBlock	TupleSignature
CudaAtom	MsmC1HermiteBlockProxyMsg	U
CudaBond	MsmC1HermiteGridCutoff
CudaBondValue	MsmC1HermiteGridCutoffProxyMsg	UniqueSet
CudaComputeGBISKernel	MsmC1HermiteGridCutoffSetupMsg	UniqueSetIter
CudaComputeNonbonded	MsmGridCutoff	UniqueSetRaw
CudaComputeNonbondedKernel	MsmGridCutoffInitMsg	UniqueSortedArray
CudaComputeNonbondedMsg	MsmGridCutoffKernel	UnregisterProxyMsg
CudaComputeRecord	MsmGridCutoffMap	V
CudaCrossterm	MsmGridCutoffProxyMsg
CudaCrosstermValue	MsmGridCutoffSetupMsg	vdw_pair_params
CudaDihedral	MsmInitMsg	vdw_params
CudaDihedralValue	MsmProfiler	vdw_val
CudaExclusion	MsmSerialCoordMsg	VDWTable
CudaFFTCompute	MsmSerialForceMsg	vect
CudaForce	MsmTimer	Vector
CudaNonbondedTables	N	VirialEnergy
CudaPatchRecord		vmdforce
CudaPmeAtomStorage	NamdCentLB	W
CudaPmeKSpaceCompute	NamdDummyLB
CudaPmePencilX	NamdHybridLB	wkf_timer
CudaPmePencilXY	NamdProfileEvent	wkfmsgtimer
CudaPmePencilXYZ	NamdState	WorkDistrib
CudaPmePencilY	nbthole_pair_params	WorkIndex
CudaPmePencilZ	nbthole_pair_value	Z
CudaPmeRealSpaceCompute	netint
CudaPmeTranspose	NL_Msm_t	zVector
CudaPmeXInitMsg	Node	_
CudaPmeXYInitMsg	NodePmeInfo
CudaPmeXYZInitMsg	NodePmeMgr	__sort_entry

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