NAMD Class Index

_	ComputeGridForceNodeMgr	MolInst
__sort_entry	ComputeHomePatch	MOStream
A	ComputeHomePatches	MoveAllByMsg
ABoundAngleRestraint	ComputeHomeTuples	MoveAtomMsg
ABoundDiheRestraint	ComputeImpropers	MovePatch
ABoundDistRestraint	computeInfo	MovePatchesMsg
ABoundPosRestraint	ComputeMap	N
ADiheRestraint	ComputeMap::ComputeData	NamdCentLB
ADistRestraint	ComputeMap::PatchRec	NamdNborLB
AFixedAngleRestraint	ComputeMapChangeMsg	NamdState
AFixedDiheRestraint	ComputeMgr	netint
AFixedDistRestraint	ComputeNonbondedCUDA	Node
AFixedPosRestraint	ComputeNonbondedCUDA::compute_record	NodeProxyMgr
AForcingAngleRestraint	ComputeNonbondedCUDA::patch_record	nodesort
AForcingDiheRestraint	ComputeNonbondedPair	nonbonded
AForcingDistRestraint	ComputeNonbondedSelf	NonbondedExclValue
AForcingPosRestraint	ComputeNonbondedUtil	O
AGroup	ComputeNonbondedWorkArrays	ObjectArena
ALambdaControl	ComputePatch	OptPmeCompute
ALambdaManager	ComputePatchPair	OptPmeDummyMsg
Alg7	ComputePme	OptPmeFFTMsg
AlgNbor	ComputePmeMgr	OptPmeGridMsg
AlgRecBisection	ComputeRestraints	OptPmeMgr
AlignVector	ComputeSelfAngles	OptPmePencil
AllCharmArrsMsg	ComputeSelfBonds	OptPmePencilInitMsg
AnAngleRestraint	ComputeSelfCrossterms	OptPmePencilInitMsgData
angle	ComputeSelfDihedrals	OptPmePencilMapX
angle_params	ComputeSelfExcls	OptPmePencilMapY
AngleElem	ComputeSelfImpropers	OptPmePencilMapZ
AngleTable	ComputeSelfTuples	OptPmeRealSpace
AngleValue	ComputeSphericalBC	OptPmeXPencil
aniso	ComputeStir	OptPmeYPencil
APosRestraint	ComputeTclBC	OptPmeZPencil
ARestraint	ConfigList	Output
ARestraintManager	ConfigList::ConfigListNode	OwnerBox
Array	Controller	P
atom_constants	ControllerBroadcasts	Pairlists
atom_name_info	crossterm	PAL
AtomCstInfo	crossterm_params	Parameters
AtomMap	CrosstermData	parm
AtomNameIdx	CrosstermElem	ParseOptions
AtomsCoorMsg	CrosstermValue	ParseOptions::DataElement
AtomsDisInfo	D	Patch
AtomsForcesMsg	datastream	PatchElem
AtomSigInfo	DataStreamMsg	PatchGridElem
AtomSignature	dihedral	patchInfo
AtomStaticInfoMsg	dihedral_params	PatchMap
AtomTable	DihedralElem	PatchMgr
AVector	DihedralTable	PDB
B	DihedralValue	PDBAtom
BackEnd	doublecomplex	PDBAtomRecord
BasicAtomInfo	drude_constants	PDBData
BOCclass	E	PDBHetatm
BOCgroup	EnqueueDataMsg	PDBUnknown
BOID	Entry	PencilElement
bond	EntryGlob	PluginIOMgr
bond_params	EwaldParticle	PmeFFTInfo
BondElem	ExclElem	PmeGrid
BondTable	ExclSigInfo	PmeGridMsg
BondValue	Exclusion	PmeKSpace
Box	ExclusionCheck	PmeParticle
BoxState	ExclusionSignature	PmePencil
BroadcastClient	ExtCoordMsg	PmePencilInitMsg
BroadcastClientElem	ExtForce	PmePencilInitMsgData
BroadcastMgr	ExtForceMsg	PmeRealSpace
BroadcastMsg	F	PmeTransMsg
C	FileIO	PmeUntransMsg
CBase_OptPmeXPencil	FileIOMgr	PmeXPencil
CBase_OptPmeYPencil	FileStack	PmeYPencil
CBase_OptPmeZPencil	Flags	PmeZPencil
CBase_PmeXPencil	floatcomplex	PositionBox
CBase_PmeYPencil	FloatVector	PositionOwnerBox
CBase_PmeZPencil	four_body_consts	PressureProfileReduction
CkCallbackWrapper	FullAtom	processorInfo
CollectionMaster	G	ProxyAtomsMsg
CollectionMaster::CollectVectorInstance	GenericAngle	ProxyCombinedResultMsg
CollectionMaster::CollectVectorSequence	GenericAtom	ProxyDataMsg
CollectionMasterHandler	GenericBond	ProxyElem
CollectionMgr	GenericDihedral	ProxyListElem
CollectionMgr::CollectVectorInstance	GenericMol	ProxyMgr
CollectionMgr::CollectVectorSequence	GlobalMaster	ProxyNodeAwareSpanningTreeMsg
CollectVectorMsg	GlobalMasterEasy	ProxyPatch
colvar	GlobalMasterFreeEnergy	ProxyResultMsg
colvar::alpha_angles	GlobalMasterIMD	ProxyResultVarsizeMsg
colvar::alpha_dihedrals	GlobalMasterMisc	ProxySpanningTreeMsg
colvar::angle	GlobalMasterServer	ProxyTree
colvar::coordnum	GlobalMasterSMD	proxyTreeNode
colvar::cvc	GlobalMasterTcl	ProxyUsage
colvar::dihedral	GlobalMasterTest	ProxyUsageKey
colvar::distance	GlobalMasterTMD	R
colvar::distance_dir	GridDepositMsg	Random
colvar::distance_xy	GridforceGrid	Rebalancer
colvar::distance_z	GridforceGrid::_box	Rebalancer::pcpair
colvar::eigenvector	GridRequestMsg	RecBisection
colvar::gyration	GridSegmentMsg	ReductionMgr
colvar::h_bond	GridVal	ReductionRegisterMsg
colvar::logmsd	GridValuesMsg	ReductionSet
colvar::min_distance	GromacsTopFile	ReductionSetData
colvar::orientation	GroupInitMsg	ReductionSubmitMsg
colvar::orientation_angle	H	RefineOnly
colvar::rmsd	HashPool	RefineTorusLB
colvar_grid	HashPoolAdaptorT	RegisterProxyMsg
colvar_grid_count	HashReal	RequireReduction
colvar_grid_gradient	HashString	ResidueLookupElem
colvar_grid_scalar	heapIterator	ResizeArray
colvarbias	heapRecord	ResizeArrayIter
colvarbias_abf	HomePatch	ResizeArrayPrimIter
colvarbias_harmonic	HomePatchElem	ResizeArrayRaw
colvarbias_histogram	HydrogenGroupID	Results
colvarbias_meta	I	S
colvarbias_meta::hill	IMDEnergies	ScriptParamMsg
colvarmodule	IMDheader	ScriptTcl
colvarmodule::atom	IMDOutput	seg_resid
colvarmodule::atom_group	improper	Sequencer
colvarmodule::matrix2d	improper_params	Set
colvarmodule::quaternion	ImproperElem	SetLatticeMsg
colvarmodule::rmatrix	ImproperValue	shared_atom
colvarmodule::rotation	indexed_table_pair	SimParameters
colvarmodule::rvector	indexed_vdw_pair	SimpleBroadcastObject
colvarmodule::vector1d	InfoRecord	SlaveInitMsg
colvarparse	infostream	SortableResizeArray
colvarparse::read_block	Iterator	SortedArray
colvarproxy	L	StreamMessage
colvarproxy_namd	Lattice	StringList
colvarvalue	LdbCoordinator	SubmitReduction
Communicate	LdbMigrateMsg	SubReqMsg
CompAtom	listNode	Sync
CompAtomExt	LJTable	T
Compute	LJTable::TableEntry	table_pair_params
ComputeAngles	LocalID	TaggedMsg
ComputeBonds	LocalPmeInfo	Tensor
ComputeConsForce	LocalWorkMsg	TorusLB
ComputeConsForceMsg	lphost	Transform
ComputeConsTorque	M	TuplePatchElem
ComputeCrossterms	main	TupleSignature
ComputeCylindricalBC	MapDistribMsg	U
ComputeDihedrals	MasterHandlerInitMsg	UniqueSet
ComputeDPMEDataMsg	MathArray	UniqueSetIter
ComputeDPMEResultsMsg	Matrix4	UniqueSetRaw
ComputeEField	Matrix4TMD	UniqueSortedArray
ComputeEwald	maxHeap	UnregisterProxyMsg
ComputeEwaldMsg	Measure	V
ComputeExcls	memusageinit	vdw_pair_params
ComputeExt	MGridforceParams	vdw_params
ComputeExtAtom	MGridforceParamsList	vdw_val
ComputeExtMgr	MigrateAtomsCombinedMsg	VDWTable
ComputeFullDirect	MigrateAtomsMsg	Vector
ComputeGlobal	MigrationInfo	vmdforce
ComputeGlobalConfigMsg	minHeap	W
ComputeGlobalDataMsg	minpoint	WorkDistrib
ComputeGlobalResultsMsg	MIStream	Z
ComputeGridForce	Molecule	zVector
ComputeGridForceMgr

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