ComputeNonbondedMIC Class Reference

#include <ComputeNonbondedMIC.h>

Inheritance diagram for ComputeNonbondedMIC:

Classes
struct	compute_record
struct	patch_record

Public Member Functions
	ComputeNonbondedMIC (ComputeID c, ComputeMgr *mgr, ComputeNonbondedMIC *m=0, int idx=-1)
	~ComputeNonbondedMIC ()
void	atomUpdate ()
void	doWork ()
int	noWork ()
void	skip ()
void	recvYieldDevice (int pe)
int	finishWork ()
void	build_exclusions ()
void	requirePatch (int pid)
void	assignPatches ()
void	registerPatches ()
Public Member Functions inherited from Compute
	Compute (ComputeID)
int	type ()
virtual	~Compute ()
void	setNumPatches (int n)
int	getNumPatches ()
virtual void	initialize ()
virtual void	patchReady (PatchID, int doneMigration, int seq)
virtual void	finishPatch (int)
int	sequence (void)
int	priority (void)
int	getGBISPhase (void)
virtual void	gbisP2PatchReady (PatchID, int seq)
virtual void	gbisP3PatchReady (PatchID, int seq)

Static Public Member Functions
static void	bind_lj_table (int deviceNum)
static void	bind_force_table (int deviceNum)
static void	bind_constants (int deviceNum)
static void	bind_exclusions (int deviceNum)

Public Attributes
LocalWorkMsg *	localWorkMsg2
int	workStarted
Lattice	lattice
int	doSlow
int	doEnergy
int	step
ResizeArray< int >	activePatches
ResizeArray< int >	localActivePatches
ResizeArray< int >	remoteActivePatches
ResizeArray< int >	hostedPatches
ResizeArray< int >	localHostedPatches
ResizeArray< int >	remoteHostedPatches
ResizeArray< patch_record >	patchRecords
ResizeArray< compute_record >	computeRecords
ResizeArray< compute_record >	localComputeRecords
ResizeArray< compute_record >	remoteComputeRecords
int	num_atom_records
int	num_local_atom_records
int	num_remote_atom_records
int	num_force_records
int	num_local_compute_records
int	num_remote_compute_records
int	num_local_patch_records
int	num_remote_patch_records
double4 *	forces
double4 *	slow_forces
GBReal *	psiSumH
GBReal *	dEdaSumH
PatchMap *	patchMap
AtomMap *	atomMap
SubmitReduction *	reduction
ComputeNonbondedMICKernel *	kernel
ComputeNonbondedMIC *	master
int	masterPe
int	slaveIndex
ComputeNonbondedMIC **	slaves
int *	slavePes
int	numSlaves
int	atomsChanged
int	computesChanged
int	pairlistsValid
float	pairlistTolerance
int	usePairlists
int	savePairlists
float	plcutoff2
int	exclContrib
int	timestep
Public Attributes inherited from Compute
const ComputeID	cid
LDObjHandle	ldObjHandle
LocalWorkMsg *const	localWorkMsg

Additional Inherited Members
Protected Member Functions inherited from Compute
void	enqueueWork ()
Protected Attributes inherited from Compute
int	computeType
int	basePriority
int	gbisPhase
int	gbisPhasePriority [3]

Detailed Description

Definition at line 22 of file ComputeNonbondedMIC.h.

Constructor & Destructor Documentation

ComputeNonbondedMIC::ComputeNonbondedMIC	(	ComputeID	c,
		ComputeMgr *	mgr,
		ComputeNonbondedMIC *	m = 0,
		int	idx = -1
	)

ComputeNonbondedMIC::~ComputeNonbondedMIC

(

)

Member Function Documentation

void ComputeNonbondedMIC::assignPatches

(

)

Referenced by ComputeMgr::createComputes().

void ComputeNonbondedMIC::atomUpdate ( )

virtual

Reimplemented from Compute.

static void ComputeNonbondedMIC::bind_constants ( int  deviceNum )

static

static void ComputeNonbondedMIC::bind_exclusions ( int  deviceNum )

static

static void ComputeNonbondedMIC::bind_force_table ( int  deviceNum )

static

static void ComputeNonbondedMIC::bind_lj_table ( int  deviceNum )

static

void ComputeNonbondedMIC::build_exclusions

(

)

void ComputeNonbondedMIC::doWork ( )

virtual

Reimplemented from Compute.

int ComputeNonbondedMIC::finishWork

(

)

int ComputeNonbondedMIC::noWork ( )

virtual

Reimplemented from Compute.

void ComputeNonbondedMIC::recvYieldDevice

(

int

pe

)

Referenced by ComputeMgr::recvYieldDevice().

void ComputeNonbondedMIC::registerPatches

(

)

void ComputeNonbondedMIC::requirePatch

(

int

pid

)

void ComputeNonbondedMIC::skip

(

)

Referenced by ComputeMgr::recvNonbondedMICSlaveSkip().

Member Data Documentation

ResizeArray<int> ComputeNonbondedMIC::activePatches

Definition at line 93 of file ComputeNonbondedMIC.h.

AtomMap* ComputeNonbondedMIC::atomMap

Definition at line 115 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::atomsChanged

Definition at line 127 of file ComputeNonbondedMIC.h.

ResizeArray<compute_record> ComputeNonbondedMIC::computeRecords

Definition at line 96 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::computesChanged

Definition at line 128 of file ComputeNonbondedMIC.h.

GBReal* ComputeNonbondedMIC::dEdaSumH

Definition at line 112 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::doEnergy

Definition at line 79 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::doSlow

Definition at line 79 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::exclContrib

Definition at line 154 of file ComputeNonbondedMIC.h.

double4* ComputeNonbondedMIC::forces

Definition at line 109 of file ComputeNonbondedMIC.h.

ResizeArray<int> ComputeNonbondedMIC::hostedPatches

Definition at line 94 of file ComputeNonbondedMIC.h.

ComputeNonbondedMICKernel* ComputeNonbondedMIC::kernel

Definition at line 118 of file ComputeNonbondedMIC.h.

Lattice ComputeNonbondedMIC::lattice

Definition at line 78 of file ComputeNonbondedMIC.h.

ResizeArray<int> ComputeNonbondedMIC::localActivePatches

Definition at line 93 of file ComputeNonbondedMIC.h.

ResizeArray<compute_record> ComputeNonbondedMIC::localComputeRecords

Definition at line 97 of file ComputeNonbondedMIC.h.

ResizeArray<int> ComputeNonbondedMIC::localHostedPatches

Definition at line 94 of file ComputeNonbondedMIC.h.

Referenced by ComputeMgr::sendNonbondedMICSlaveEnqueue().

LocalWorkMsg* ComputeNonbondedMIC::localWorkMsg2

Definition at line 75 of file ComputeNonbondedMIC.h.

Referenced by ComputeMgr::sendNonbondedMICSlaveEnqueue().

ComputeNonbondedMIC* ComputeNonbondedMIC::master

Definition at line 120 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::masterPe

Definition at line 121 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::num_atom_records

Definition at line 99 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::num_force_records

Definition at line 102 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::num_local_atom_records

Definition at line 100 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::num_local_compute_records

Definition at line 104 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::num_local_patch_records

Definition at line 106 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::num_remote_atom_records

Definition at line 101 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::num_remote_compute_records

Definition at line 105 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::num_remote_patch_records

Definition at line 107 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::numSlaves

Definition at line 125 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::pairlistsValid

Definition at line 130 of file ComputeNonbondedMIC.h.

float ComputeNonbondedMIC::pairlistTolerance

Definition at line 131 of file ComputeNonbondedMIC.h.

PatchMap* ComputeNonbondedMIC::patchMap

Definition at line 114 of file ComputeNonbondedMIC.h.

ResizeArray<patch_record> ComputeNonbondedMIC::patchRecords

Definition at line 95 of file ComputeNonbondedMIC.h.

float ComputeNonbondedMIC::plcutoff2

Definition at line 134 of file ComputeNonbondedMIC.h.

GBReal* ComputeNonbondedMIC::psiSumH

Definition at line 111 of file ComputeNonbondedMIC.h.

SubmitReduction* ComputeNonbondedMIC::reduction

Definition at line 116 of file ComputeNonbondedMIC.h.

ResizeArray<int> ComputeNonbondedMIC::remoteActivePatches

Definition at line 93 of file ComputeNonbondedMIC.h.

ResizeArray<compute_record> ComputeNonbondedMIC::remoteComputeRecords

Definition at line 97 of file ComputeNonbondedMIC.h.

ResizeArray<int> ComputeNonbondedMIC::remoteHostedPatches

Definition at line 94 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::savePairlists

Definition at line 133 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::slaveIndex

Definition at line 122 of file ComputeNonbondedMIC.h.

int* ComputeNonbondedMIC::slavePes

Definition at line 124 of file ComputeNonbondedMIC.h.

ComputeNonbondedMIC** ComputeNonbondedMIC::slaves

Definition at line 123 of file ComputeNonbondedMIC.h.

double4* ComputeNonbondedMIC::slow_forces

Definition at line 110 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::step

Definition at line 80 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::timestep

Definition at line 157 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::usePairlists

Definition at line 132 of file ComputeNonbondedMIC.h.

int ComputeNonbondedMIC::workStarted

Definition at line 77 of file ComputeNonbondedMIC.h.

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The documentation for this class was generated from the following file:

• ComputeNonbondedMIC.h