NAMD Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

• __sort_entry
• AGroup
• ALambdaControl
• ALambdaManager
• angle
• angle_params
• AngleElem
• AngleTable
• AngleValue
• aniso
• AnisoElem
• ARestraint
  • ADiheRestraint
    • ABoundDiheRestraint
    • AFixedDiheRestraint
    • AForcingDiheRestraint
  • ADistRestraint
    • ABoundDistRestraint
    • AFixedDistRestraint
    • AForcingDistRestraint
  • AnAngleRestraint
    • ABoundAngleRestraint
    • AFixedAngleRestraint
    • AForcingAngleRestraint
  • APosRestraint
    • ABoundPosRestraint
    • AFixedPosRestraint
    • AForcingPosRestraint
• ARestraintManager
• msm::Array< T >
• Array< Elem, Size >
  • MathArray< Elem, Size >
• msm::Array< C1Matrix >
• msm::Array< C1Vector >
• msm::Array< float >
• assert_ProxyResultVarsizeMsg
• atom_constants
• atom_name_info
• msm::AtomCoord
• AtomCstInfo
• atomID_less
• AtomMap
• AtomMapper
• AtomNameIdx
• AtomsCntPerPatchMsg
• AtomSigInfo
• AtomSignature
• AtomTable
• AVector
• BackEnd
• BasicAtomInfo
• msm::BlockDiagram
• msm::BlockIndex
• msm::BlockSend
• BOCgroup
• BOID
• bond
• bond_params
• BondElem
• BondTable
• BondValue
• BoundingBox
• Box< Owner, Data >
• BroadcastClient
  • SimpleBroadcastObject< T >
• BroadcastClientElem
• BroadcastMgr
• BroadcastMsg
• C1Matrix
• C1Vector
• CBase_OptPmeXPencil
  • OptPmePencil< CBase_OptPmeXPencil >
    • OptPmeXPencil
• CBase_OptPmeYPencil
  • OptPmePencil< CBase_OptPmeYPencil >
    • OptPmeYPencil
• CBase_OptPmeZPencil
  • OptPmePencil< CBase_OptPmeZPencil >
    • OptPmeZPencil
• CBase_PmeXPencil
  • PmePencil< CBase_PmeXPencil >
    • PmeXPencil
• CBase_PmeYPencil
  • PmePencil< CBase_PmeYPencil >
    • PmeYPencil
• CBase_PmeZPencil
  • PmePencil< CBase_PmeZPencil >
    • PmeZPencil
• CheckpointAtomsMsg
• CheckpointAtomsReqMsg
• CheckpointMsg
• CkCallbackWrapper
• ClusterCoorElem
• ClusterCoorMsg
• ClusterElem
• ClusterSizeMsg
• CollectionMaster
• CollectionMaster::CollectVectorInstance
• CollectionMaster::CollectVectorSequence
• CollectionMgr
• CollectionMgr::CollectVectorInstance
• CollectionMgr::CollectVectorSequence
• CollectLoadsMsg
• CollectVectorMsg
• CollectVectorVarMsg
• Communicate
• CompAtom
  • FullAtom
    • InputAtom
• CompAtomExt
  • FullAtom
• Compute
  • ComputeHomePatch
    • ComputeConsForce
    • ComputeConsTorque
    • ComputeCylindricalBC
    • ComputeEField
    • ComputeGridForce
    • ComputeRestraints
    • ComputeSphericalBC
    • ComputeStir
  • ComputeHomePatches
    • ComputeEwald
    • ComputeExt
    • ComputeFmmSerial
    • ComputeFullDirect
    • ComputeGBISser
    • ComputeGlobal
    • ComputeMoa
    • ComputeMsm
    • ComputeMsmSerial
    • ComputeQM
    • ComputeTclBC
    • OptPmeCompute
  • ComputeHomeTuples< T, S, P >
    • ComputeAngles
    • ComputeAniso
    • ComputeBonds
    • ComputeCrossterms
    • ComputeDihedrals
    • ComputeGromacsPair
    • ComputeImpropers
    • ComputeSelfTuples< T, S, P >
      • ComputeSelfAngles
      • ComputeSelfAniso
      • ComputeSelfBonds
      • ComputeSelfCrossterms
      • ComputeSelfDihedrals
      • ComputeSelfGromacsPair
      • ComputeSelfImpropers
      • ComputeSelfThole
    • ComputeSelfTuples< AngleElem, angle, AngleValue >
    • ComputeSelfTuples< AnisoElem, aniso, aniso >
    • ComputeSelfTuples< BondElem, bond, BondValue >
    • ComputeSelfTuples< CrosstermElem, crossterm, CrosstermValue >
    • ComputeSelfTuples< DihedralElem, dihedral, DihedralValue >
    • ComputeSelfTuples< ExclElem, Exclusion, int >
      • ComputeSelfExcls
    • ComputeSelfTuples< GromacsPairElem, gromacsPair, GromacsPairValue >
    • ComputeSelfTuples< ImproperElem, improper, ImproperValue >
    • ComputeSelfTuples< TholeElem, thole, thole >
    • ComputeThole
  • ComputeHomeTuples< AngleElem, angle, AngleValue >
  • ComputeHomeTuples< AnisoElem, aniso, aniso >
  • ComputeHomeTuples< BondElem, bond, BondValue >
  • ComputeHomeTuples< CrosstermElem, crossterm, CrosstermValue >
  • ComputeHomeTuples< DihedralElem, dihedral, DihedralValue >
  • ComputeHomeTuples< ExclElem, Exclusion, int >
    • ComputeExcls
  • ComputeHomeTuples< GromacsPairElem, gromacsPair, GromacsPairValue >
  • ComputeHomeTuples< ImproperElem, improper, ImproperValue >
  • ComputeHomeTuples< TholeElem, thole, thole >
  • ComputeLCPO
  • ComputeNonbondedCUDA
  • ComputeNonbondedMIC
  • ComputePatch
    • ComputeNonbondedSelf
  • ComputePatchPair
    • ComputeNonbondedPair
  • ComputePme
  • ComputePmeCUDA
  • CudaComputeNonbonded
• ComputeBondedCUDAKernel
• ComputeBondedCUDAKernel::BondedVirial< T >
• ComputeConsForceMsg
• ComputeCUDAMgr
• ComputeDPMEDataMsg
• ComputeDPMEResultsMsg
• ComputeEwaldMsg
• ComputeExtAtom
• ComputeExtMgr
• ComputeFmmSerialAtom
• ComputeFmmSerialMgr
• ComputeGBISAtom
• ComputeGBISserMgr
• ComputeGlobalDataMsg
• ComputeGlobalResultsMsg
• ComputeMap
• ComputeMap::ComputeData
• ComputeMap::PatchRec
• ComputeMapChangeMsg
• ComputeMgr
• ComputeMsmMgr
• ComputeMsmSerialAtom
• ComputeMsmSerialMgr
• ComputeNonbondedCUDA::compute_record
• ComputeNonbondedCUDA::patch_record
• ComputeNonbondedMIC::compute_record
• ComputeNonbondedMIC::patch_record
• ComputeNonbondedUtil
  • ComputeLCPO
  • ComputeNonbondedCUDA
  • ComputeNonbondedMIC
  • ComputeNonbondedPair
  • ComputeNonbondedSelf
  • CudaComputeNonbonded
  • ExclElem
• ComputeNonbondedWorkArrays
• ComputePmeCUDADevice
• ComputePmeCUDAMgr
• ComputePmeMgr::cuda_submit_charges_args
• ComputePmeUtil
  • ComputePme
  • ComputePmeMgr
• ComputeQMAtom
• ComputeQMMgr
• ComputeQMPntChrg
• ConfigList
• ConfigList::ConfigListNode
• ConstPointer
• Controller::checkpoint
• ControllerBroadcasts
• ControllerState
  • Controller
• cptr_sortop_priority
• cr_sortop_distance
• cr_sortop_reverse_priority
• crossterm
• crossterm_params
• CrosstermData
• CrosstermElem
• CrosstermValue
• cuda_args_t
• CudaAngle
• CudaAngleValue
• CudaAtom
• CudaBond
• CudaBondValue
• CudaComputeGBISKernel
• CudaComputeNonbonded::ComputeRecord
• CudaComputeNonbonded::PatchRecord
• CudaComputeNonbondedKernel
• CudaComputeNonbondedMsg
• CudaComputeRecord
• CudaCrossterm
• CudaCrosstermValue
• CudaDihedral
• CudaDihedralValue
• CudaExclusion
• CudaForce
• CudaNonbondedTables
• CudaPatchRecord
• CudaPmePencilX
• CudaPmePencilXY
• CudaPmePencilXYZ
• CudaPmePencilY
• CudaPmePencilZ
• CudaPmeXInitMsg
• CudaPmeXYInitMsg
• CudaPmeXYZInitMsg
• CudaStaticAssert< true >
• CudaTileListKernel
• DataExchanger
• DataMessage
• datastream
• DataStreamMsg
• DeviceBuffer
• DeviceCUDA
• DeviceDataMsg
• dihedral
• dihedral_params
• DihedralElem
• DihedralTable
• DihedralValue
• doublecomplex
• drude_constants
• dummyData
• eABF
  • eABF1D
  • eABF2D
• Entry< Elem >
• EntryGlob< Elem >
• EwaldParticle
• ExchangeAtomsMsg
• ExchangeAtomsReqMsg
• exclmask
• ExclSigInfo
• Exclusion
• ExclusionCheck
• ExclusionSignature
• exlist_sortop
• ExtCoordMsg
• ExtForce
• ExtForceMsg
• FFTCompute
  • CudaFFTCompute
• FileStack
• FinishWorkMsg
• Flags
• float2
• floatcomplex
• FloatVector
• FmmSerialCoordMsg
• FmmSerialForceMsg
• msm::FoldFactor
• four_body_consts
• gather_t< T, order >
• GBISCoordMsg
• GBISForceMsg
• GBISInput< phase >
• GBISInput< 1 >
• GBISInput< 2 >
• GBISInput< 3 >
• GBISParam< phase >
• GBISParam< 1 >
• GBISParam< 2 >
• GBISParam< 3 >
• GBISParamStruct
• GBISResults< phase >
• GBISResults< 1 >
• GBISResults< 2 >
• GBISResults< 3 >
• GenericAngle
• GenericAtom
• GenericBond
• GenericDihedral
• GenericMol
• GlobalMaster
  • colvarproxy_namd
  • GlobalMasterEasy
    • GlobalMasterMisc
  • GlobalMasterFreeEnergy
  • GlobalMasterIMD
  • GlobalMasterSMD
  • GlobalMasterSymmetry
  • GlobalMasterTcl
  • GlobalMasterTest
  • GlobalMasterTMD
• GlobalMasterServer
• go_pair
• go_val
• GridforceFullBaseGrid
  • GridforceFullMainGrid
  • GridforceFullSubGrid
• GridforceFullBaseGrid::GridIndices
• GridforceGrid
  • GridforceFullMainGrid
  • GridforceLiteGrid
• GridMsg
• GroGaussPair
• GroLJPair
• gromacsPair
• GromacsPairElem
• GromacsPairValue
• GromacsTopFile
• GroupInitMsg
• HashPool< T >
• HashPoolAdaptorT< T >
• HashReal
• HashString
• heapIterator
• heapRecord
• HomePatch::checkpoint_t
• HomePatch::RattleList
• HomePatchElem
• HydroBasedMsg
• HydrogenGroupID
• idIndxStr
• ijpair
• ijpair_sortop_bit_reversed
• IMDEnergies
• IMDheader
• IMDOutput
• improper
• improper_params
• ImproperElem
• ImproperValue
• indexed_nbthole_pair
• indexed_table_pair
• indexed_vdw_pair
• msm::IndexRange
  • msm::Grid< T >
  • msm::Grid< C1Matrix >
  • msm::Grid< C1Vector >
  • msm::GridFixed< T, N >
• InfoRecord
  • computeInfo
  • patchInfo
  • processorInfo
• infostream
• InitDeviceMsg
• InitDeviceMsg2
• Int2
• Int3
• InterpParams_t
• intpair
• IRSet
  • LargeIRSet
• Iterator
• msm::Ivec
• Lattice
• LCPOAtom
• LCPONeighborList
• LdbCoordinator
• LdbMigrateMsg
• listNode
• LJTable
• LJTable::TableEntry
• LocalID
• LocalLBInfoMsg
• LocalPmeInfo
• LocalWorkMsg
• lphost
• LSSDataStr
• lssDistSort
• LSSSubsDat
• main
• msm::Map
• Matrix4
• Matrix4Symmetry
• Matrix4TMD
• maxHeap
• Measure
• meMMQMGrp
• memusageinit
• MGridforceParams
• MGridforceParamsList
• MigrateAtomsCombinedMsg
• MigrateAtomsMsg
• MigrationInfo
• minHeap
• minpoint
• MIStream
• MoaData
• Molecule
• MolInfoMsg
• MolInst
• MOStream
• MoveAllByMsg
• MoveAtomMsg
• MoveInputAtomsMsg
• MovePatch
• MovePatchAtomsMsg
• MovePatchesMsg
• MsmBlockKernel< Vtype, Mtype >
  • MsmBlock
• MsmBlockKernel< C1Vector, C1Matrix >
  • MsmC1HermiteBlock
• MsmBlockKernel< float, float >
• MsmBlockMap
• MsmBlockProxyMsg
• MsmC1HermiteBlockProxyMsg
• MsmC1HermiteGridCutoffProxyMsg
• MsmC1HermiteGridCutoffSetupMsg
• MsmGridCutoffInitMsg
• MsmGridCutoffKernel< Vtype, Mtype >
  • MsmGridCutoff
• MsmGridCutoffKernel< C1Vector, C1Matrix >
  • MsmC1HermiteGridCutoff
• MsmGridCutoffKernel< float, float >
• MsmGridCutoffMap
• MsmGridCutoffProxyMsg
• MsmGridCutoffSetupMsg
• MsmInitMsg
• MsmProfiler
• MsmSerialCoordMsg
• MsmSerialForceMsg
• MsmTimer
• NamdCentLB
• NamdDummyLB
• NamdHybridLB
• NamdNborLB
• NamdState
• nbthole_pair_params
• nbthole_pair_value
• netint
• NL_Msm_t
• Node
• NodePmeInfo
• NodePmeMgr
• NodeProxyMgr
• nodesort
• nonbonded
• NonbondedCUDASkipMsg
• NonbondedCUDASlaveMsg
• NonbondedExclValue
• NonbondedMICSkipMsg
• NonbondedMICSlaveMsg
• NumDevicesMsg
• ObjectArena< Type >
• ofstream_namd
• OptPmeDummyMsg
• OptPmeFFTMsg
• OptPmeGridMsg
• OptPmeMgr
• OptPmePencil< T >
• OptPmePencilInitMsg
• OptPmePencilInitMsgData
• OptPmePencilMapX
• OptPmePencilMapY
• OptPmePencilMapZ
• OptPmeRealSpace
• OptPmeSubComputeMsg
• Output
• OutputAtomRecord
• OutputAtomRecord::floatVals
• OutputAtomRecord::integerVals
• OutputAtomRecord::shortVals
• OwnerBox< Owner, Data >
• Pairlists
• PairTable
• PAL
• ParallelIOMgr
• Parameters
• parm
• ParseOptions
• ParseOptions::DataElement
• Patch
  • HomePatch
  • ProxyPatch
• patch_sortop_curve_a
• patch_sortop_curve_b
• patch_sortop_curve_c
• msm::PatchData
• patchDataStrc
• msm::PatchDiagram
• PatchElem
• PatchGridElem
• PatchInfo
• PatchMap
• PatchMapMsg
• PatchMgr
• PatchPairRecord
• PatchProxyListMsg
• msm::PatchSend
• PDB
• PDBData
  • PDBAtom
    • PDBAtomRecord
    • PDBHetatm
  • PDBUnknown
• pe_sortop_bit_reversed
• pe_sortop_coord_x
• pe_sortop_coord_y
• PencilElement
• pid_sortop_reverse_priority
• PluginIOMgr
• PmeAckMsg
• PmeAtomFiler
• PmeAtomMsg
• PmeAtomPencilMsg
• PmeAtomStorage
  • CpuPmeAtomStorage
  • CudaPmeAtomStorage
• PmeBlockMsg
• PmeDoneMsg
• PmeEvirMsg
• PmeFFTInfo
• PmeForceMsg
• PmeForcePencilMsg
• PmeGrid
• PmeGridMsg
• PmeKSpace
• PmeKSpaceCompute
  • CudaPmeKSpaceCompute
• PmeLaunchMsg
• PmeParticle
• PmePencil< T >
• PmePencilInitMsg
• PmePencilInitMsgData
• PmePencilMap
• PmePencilX
• PmePencilXMap
• PmePencilXY
• PmePencilXYMap
• PmePencilXYZ
• PmePencilXYZMap
• PmePencilY
• PmePencilZ
• PmeRealSpace
• PmeRealSpaceCompute
  • CudaPmeRealSpaceCompute
• PmeRunMsg
• PmeSelfEnergyMsg
• PmeSharedTransMsg
• PmeSharedUntransMsg
• PmeStartMsg
• PmeTransMsg
• PmeTranspose
  • CudaPmeTranspose
• PmeUntransMsg
• pntChrgDist
• Pointer
• position_index
• PressureProfileReduction
• msm::PriorityQueue< T >
• ProxyCombinedResultMsg
• ProxyCombinedResultRawMsg
• ProxyDataMsg
• ProxyElem
• ProxyGBISP1ResultMsg
• ProxyGBISP2DataMsg
• ProxyGBISP2ResultMsg
• ProxyGBISP3DataMsg
• ProxyListInfo
• ProxyMgr
• ProxyNodeAwareSpanningTreeMsg
• ProxyResultMsg
• ProxyResultVarsizeMsg
• ProxySpanningTreeMsg
• ProxyTree
• proxyTreeNode
• ProxyUsage
• ProxyUsageKey
• QMAtomData
• QMCoordMsg
• QMForce
• QMForceMsg
• QMGrpCalcMsg
• QMGrpResMsg
• QMPntChrgMsg
• qmSolvData
• Random
• RattleParam
• Rebalancer
  • Alg7
  • AlgNbor
  • AlgRecBisection
  • RefineOnly
  • RefineTorusLB
    • TorusLB
• Rebalancer::pcpair
• RecBisection
• RecipVirial_t
• RecvDeviceMsg
• ReductionMgr
• ReductionRegisterMsg
• ReductionSet
• ReductionSetData
• ReductionSubmitMsg
• refSelStr
• RegisterPatchMsg
• RegisterProxyMsg
• ReplicaDcdAckMsg
• ReplicaDcdDataMsg
• ReplicaDcdInitMsg
• RequireReduction
• ResidueLookupElem
• ResizeArray< Elem >
  • SortableResizeArray< Elem >
    • SortedArray< Elem >
      • UniqueSortedArray< Elem >
• ResizeArray< AngleElem >
• ResizeArray< AnisoElem >
• ResizeArray< BondElem >
• ResizeArray< CrosstermElem >
• ResizeArray< DihedralElem >
• ResizeArray< ExclElem >
• ResizeArray< GromacsPairElem >
• ResizeArray< ImproperElem >
• ResizeArray< TholeElem >
• ResizeArrayIter< T >
• ResizeArrayPrimIter< T >
• ResizeArrayRaw< Elem >
• ResizeArrayRaw< AngleElem >
• ResizeArrayRaw< AnisoElem >
• ResizeArrayRaw< BondElem >
• ResizeArrayRaw< CrosstermElem >
• ResizeArrayRaw< DihedralElem >
• ResizeArrayRaw< ExclElem >
• ResizeArrayRaw< GromacsPairElem >
• ResizeArrayRaw< ImproperElem >
• ResizeArrayRaw< TholeElem >
• Results
• ScriptParamMsg
• ScriptTcl
• seg_resid
• Sequencer
• SetLatticeMsg
• SimParameters
• SlaveInitMsg
• sortop_base
  • sortop_x
  • sortop_y
  • sortop_z
• sortop_bit_reversed
• SplitComputesMsg
• StreamMessage
• StringList
• SubmitReduction
• Sync
• table_pair_params
• TaggedMsg
• Tensor
• thole
• TholeElem
• TileExcl
• TileList
• TileListStat
• TileListVirialEnergy
• TopoManagerWrapper
• TopoManagerWrapper::pe_sortop_topo
• Transform
• TransposeBatch< T >
• TuplePatchElem
• TupleSignature
• UniqueSet< Elem >
• UniqueSetIter< T >
• UniqueSetRaw< Elem >
• UnregisterProxyMsg
• vdw_pair_params
• vdw_params
• vdw_val
• VDWTable
• vect
• Vector
  • AlignVector
  • zVector
• VirialEnergy
• vmdforce
• wkf_timer
• wkfmsgtimer
• WorkDistrib
• WorkDistrib::pe_sortop_compact
• WorkDistrib::pe_sortop_diffuse
• WorkIndex

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