NAMD Class Hierarchy

This inheritance list is sorted roughly, but not completely, alphabetically:

• __sort_entry
• AGroup
• ALambdaControl
• ALambdaManager
• angle
• angle_params
• AngleElem
• AngleTable
• AngleValue
• aniso
• AnisoElem
• ARestraint
  • ADiheRestraint
    • ABoundDiheRestraint
    • AFixedDiheRestraint
    • AForcingDiheRestraint
  • ADistRestraint
    • ABoundDistRestraint
    • AFixedDistRestraint
    • AForcingDistRestraint
  • AnAngleRestraint
    • ABoundAngleRestraint
    • AFixedAngleRestraint
    • AForcingAngleRestraint
  • APosRestraint
    • ABoundPosRestraint
    • AFixedPosRestraint
    • AForcingPosRestraint
• ARestraintManager
• Array< Elem, Size >
  • MathArray< Elem, Size >
  • MathArray< double, 7 >
• Array< double, Size >
• atom_constants
• atom_name_info
• AtomCstInfo
• atomID_less
• AtomMap
• AtomMapper
• AtomNameIdx
• AtomsCntPerPatchMsg
• AtomSigInfo
• AtomSignature
• AtomTable
• AVector
• BackEnd
• BasicAtomInfo
• BOCclass
  • BroadcastMgr
  • CollectionMgr
  • ComputeExtMgr
  • ComputeGBISserMgr
  • ComputeMgr
  • ComputeMsmMgr
  • ComputeMsmSerialMgr
  • ComputePmeMgr
  • LdbCoordinator
  • Node
  • OptPmeMgr
  • ParallelIOMgr
  • PatchMgr
  • ProxyMgr
  • ReductionMgr
  • Sync
  • WorkDistrib
• BOCgroup
• BOID
• bond
• bond_params
• BondElem
• BondTable
• BondValue
• Box< Owner, Data >
• BroadcastClient
  • SimpleBroadcastObject< T >
• BroadcastClientElem
• BroadcastMsg
• CBase_OptPmeXPencil
  • OptPmePencil< CBase_OptPmeXPencil >
    • OptPmeXPencil
• CBase_OptPmeYPencil
  • OptPmePencil< CBase_OptPmeYPencil >
    • OptPmeYPencil
• CBase_OptPmeZPencil
  • OptPmePencil< CBase_OptPmeZPencil >
    • OptPmeZPencil
• CBase_PmeXPencil
  • PmePencil< CBase_PmeXPencil >
    • PmeXPencil
• CBase_PmeYPencil
  • PmePencil< CBase_PmeYPencil >
    • PmeYPencil
• CBase_PmeZPencil
  • PmePencil< CBase_PmeZPencil >
    • PmeZPencil
• CkCallbackWrapper
• ClusterCoorElem
• ClusterCoorMsg
• ClusterElem
• ClusterSizeMsg
• CollectionMaster
• CollectionMaster::CollectVectorInstance
• CollectionMaster::CollectVectorSequence
• CollectionMgr::CollectVectorInstance
• CollectionMgr::CollectVectorSequence
• CollectVectorMsg
• CollectVectorVarMsg
• colvarbias_meta::hill
• colvarmodule
• colvarmodule::atom
• colvarmodule::matrix2d< T, outer_length, inner_length >
• colvarmodule::matrix2d< colvarmodule::real, 3, 3 >
  • colvarmodule::rmatrix
• colvarmodule::quaternion
• colvarmodule::rotation
• colvarmodule::rvector
• colvarmodule::vector1d< T, length >
• colvarparse
  • colvar
  • colvar::cvc
    • colvar::alpha_angles
    • colvar::angle
    • colvar::dihedPC
    • colvar::dihedral
    • colvar::distance
      • colvar::coordnum
      • colvar::distance_dir
      • colvar::distance_vec
      • colvar::min_distance
      • colvar::selfcoordnum
    • colvar::distance_z
      • colvar::distance_xy
    • colvar::eigenvector
    • colvar::gyration
    • colvar::h_bond
    • colvar::orientation
      • colvar::logmsd
      • colvar::orientation_angle
      • colvar::rmsd
      • colvar::spin_angle
      • colvar::tilt
  • colvar_grid< T >
  • colvar_grid< cvm::real >
    • colvar_grid_gradient
    • colvar_grid_scalar
  • colvar_grid< size_t >
    • colvar_grid_count
  • colvarbias
    • colvarbias_abf
    • colvarbias_harmonic
    • colvarbias_histogram
    • colvarbias_meta
  • colvarmodule::atom_group
• colvarparse::read_block
• colvarproxy
  • colvarproxy_namd
• colvarvalue
• Communicate
• CompAtom
  • FullAtom
    • InputAtom
• CompAtomExt
  • FullAtom
• Compute
  • ComputeHomePatch
    • ComputeConsForce
    • ComputeConsTorque
    • ComputeCylindricalBC
    • ComputeEField
    • ComputeGridForce
    • ComputeRestraints
    • ComputeSphericalBC
    • ComputeStir
  • ComputeHomePatches
    • ComputeEwald
    • ComputeExt
    • ComputeFullDirect
    • ComputeGBISser
    • ComputeGlobal
    • ComputeMoa
    • ComputeMsm
    • ComputeMsmSerial
    • ComputePme
    • ComputeTclBC
    • OptPmeCompute
  • ComputeHomeTuples< T, S, P >
    • ComputeSelfTuples< T, S, P >
    • ComputeSelfTuples< AngleElem, Angle, AngleValue >
      • ComputeSelfAngles
    • ComputeSelfTuples< AnisoElem, Aniso, AnisoValue >
      • ComputeSelfAniso
    • ComputeSelfTuples< BondElem, Bond, BondValue >
      • ComputeSelfBonds
    • ComputeSelfTuples< CrosstermElem, Crossterm, CrosstermValue >
      • ComputeSelfCrossterms
    • ComputeSelfTuples< DihedralElem, Dihedral, DihedralValue >
      • ComputeSelfDihedrals
    • ComputeSelfTuples< ExclElem, Exclusion, int >
      • ComputeSelfExcls
    • ComputeSelfTuples< ImproperElem, Improper, ImproperValue >
      • ComputeSelfImpropers
    • ComputeSelfTuples< TholeElem, Thole, TholeValue >
      • ComputeSelfThole
  • ComputeHomeTuples< AngleElem, Angle, AngleValue >
  • ComputeHomeTuples< AngleElem, Angle, AngleValue >
    • ComputeAngles
  • ComputeHomeTuples< AnisoElem, Aniso, AnisoValue >
    • ComputeAniso
  • ComputeHomeTuples< BondElem, Bond, BondValue >
    • ComputeBonds
  • ComputeHomeTuples< CrosstermElem, Crossterm, CrosstermValue >
    • ComputeCrossterms
  • ComputeHomeTuples< CrosstermElem, Crossterm, CrosstermValue >
  • ComputeHomeTuples< DihedralElem, Dihedral, DihedralValue >
    • ComputeDihedrals
  • ComputeHomeTuples< DihedralElem, Dihedral, DihedralValue >
  • ComputeHomeTuples< ExclElem, Exclusion, int >
    • ComputeExcls
  • ComputeHomeTuples< ImproperElem, Improper, ImproperValue >
    • ComputeImpropers
  • ComputeHomeTuples< TholeElem, Thole, TholeValue >
    • ComputeThole
  • ComputeHomeTuples< TholeElem, Thole, TholeValue >
  • ComputeLCPO
  • ComputeNonbondedCUDA
  • ComputePatch
    • ComputeNonbondedSelf
  • ComputePatchPair
    • ComputeNonbondedPair
• ComputeConsForceMsg
• ComputeDPMEDataMsg
• ComputeDPMEResultsMsg
• ComputeEwaldMsg
• ComputeExtAtom
• ComputeGBISAtom
• ComputeGlobalDataMsg
• ComputeGlobalResultsMsg
• ComputeMap
• ComputeMap::ComputeData
• ComputeMap::PatchRec
• ComputeMapChangeMsg
• ComputeMapMsg
• ComputeMsmSerialAtom
• ComputeNonbondedCUDA::compute_record
• ComputeNonbondedCUDA::patch_record
• ComputeNonbondedUtil
  • ComputeLCPO
  • ComputeNonbondedCUDA
  • ComputeNonbondedPair
  • ComputeNonbondedSelf
  • ExclElem
• ComputeNonbondedWorkArrays
• ConfigList
• ConfigList::ConfigListNode
• Controller
• ControllerBroadcasts
• cr_sortop
• crossterm
• crossterm_params
• CrosstermData
• CrosstermElem
• CrosstermValue
• CudaAtom
• datastream
• DataStreamMsg
• dihedral
• dihedral_params
• DihedralElem
• DihedralTable
• DihedralValue
• doublecomplex
• drude_constants
• Entry< Elem >
• Entry< TuplePatchElem >
• EntryGlob< Elem >
• EntryGlob< TuplePatchElem >
• EwaldParticle
• ExclSigInfo
• Exclusion
• ExclusionCheck
• ExclusionSignature
• exlist_sortop
• ExtCoordMsg
• ExtForce
• ExtForceMsg
• FileStack
• Flags
• floatcomplex
• FloatVector
• four_body_consts
• GBISCoordMsg
• GBISForceMsg
• GBISParamStruct
• GenericAngle
• GenericAtom
• GenericBond
• GenericDihedral
• GenericMol
• GlobalMaster
  • colvarproxy_namd
  • GlobalMasterEasy
    • GlobalMasterMisc
  • GlobalMasterFreeEnergy
  • GlobalMasterIMD
  • GlobalMasterSMD
  • GlobalMasterSymmetry
  • GlobalMasterTcl
  • GlobalMasterTest
  • GlobalMasterTMD
• GlobalMasterServer
• go_val
• GridforceFullBaseGrid
  • GridforceFullMainGrid
  • GridforceFullSubGrid
• GridforceFullBaseGrid::GridIndices
• GridforceGrid
  • GridforceFullMainGrid
  • GridforceLiteGrid
• GromacsTopFile
• GroupInitMsg
• HashPool< T >
• HashPoolAdaptorT< T >
• HashReal
• HashString
• heapIterator
• heapRecord
• HomePatchElem
• HydroBasedMsg
• HydrogenGroupID
• ijpair
• IMDEnergies
• IMDheader
• IMDOutput
• improper
• improper_params
• ImproperElem
• ImproperValue
• indexed_nbthole_pair
• indexed_table_pair
• indexed_vdw_pair
• InfoRecord
  • computeInfo
  • patchInfo
  • processorInfo
• infostream
• Int2
• Int3
• InterpParams_t
• IRSet
  • LargeIRSet
• Iterator
• Lattice
• LCPOAtom
• LCPONeighborList
• LdbMigrateMsg
• listNode
• LJTable
• LJTable::TableEntry
• LocalID
• LocalLBInfoMsg
• LocalPmeInfo
• LocalWorkMsg
• lphost
• main
• Matrix4
• Matrix4Symmetry
• Matrix4TMD
• maxHeap
• Measure
• memusageinit
• MGridforceParams
• MGridforceParamsList
• MigrateAtomsCombinedMsg
• MigrateAtomsMsg
• MigrationInfo
• minHeap
• minpoint
• MIStream
• MoaData
• Molecule
• MolInfoMsg
• MolInst
• MOStream
• MoveAllByMsg
• MoveAtomMsg
• MoveInputAtomsMsg
• MovePatch
• MovePatchAtomsMsg
• MovePatchesMsg
• MsmData
• MsmInitMsg
• MsmSerialCoordMsg
• MsmSerialForceMsg
• NamdCentLB
• NamdDummyLB
• NamdHybridLB
• NamdNborLB
• NamdState
• nbthole_pair_params
• nbthole_pair_value
• netint
• NL_Msm_t
• NodePmeInfo
• NodePmeMgr
• NodeProxyMgr
• nodesort
• nonbonded
• NonbondedCUDASlaveMsg
• NonbondedExclValue
• ObjectArena< Type >
• OptPmeDummyMsg
• OptPmeFFTMsg
• OptPmeGridMsg
• OptPmePencil< T >
• OptPmePencilInitMsg
• OptPmePencilInitMsgData
• OptPmePencilMapX
• OptPmePencilMapY
• OptPmePencilMapZ
• OptPmeRealSpace
• Output
• OutputAtomRecord
• OutputAtomRecord::floatVals
• OutputAtomRecord::integerVals
• OutputAtomRecord::shortVals
• OwnerBox< Owner, Data >
• Pairlists
• PAL
• Parameters
• parm
• ParseOptions
• ParseOptions::DataElement
• Patch
  • HomePatch
  • ProxyPatch
• PatchElem
• PatchGridElem
• PatchMap
• PatchMapMsg
• PatchProxyListMsg
• PDB
• PDBData
  • PDBAtom
    • PDBAtomRecord
    • PDBHetatm
  • PDBUnknown
• PencilElement
• PluginIOMgr
• PmeAckMsg
• PmeFFTInfo
• PmeGrid
• PmeGridMsg
• PmeKSpace
• PmeParticle
• PmePencil< T >
• PmePencilInitMsg
• PmePencilInitMsgData
• PmePencilMap
• PmeRealSpace
• PmeSharedTransMsg
• PmeSharedUntransMsg
• PmeTransMsg
• PmeUntransMsg
• position_index
• PressureProfileReduction
• ProxyCombinedResultMsg
• ProxyCombinedResultRawMsg
• ProxyDataMsg
• ProxyElem
• ProxyGBISP1ResultMsg
• ProxyGBISP2DataMsg
• ProxyGBISP2ResultMsg
• ProxyGBISP3DataMsg
• ProxyListInfo
• ProxyNodeAwareSpanningTreeMsg
• ProxyResultMsg
• ProxyResultVarsizeMsg
• ProxySpanningTreeMsg
• ProxyTree
• proxyTreeNode
• ProxyUsage
• ProxyUsageKey
• Random
• Rebalancer
  • Alg7
  • AlgNbor
  • AlgRecBisection
  • RefineOnly
  • RefineTorusLB
    • TorusLB
• Rebalancer::pcpair
• RecBisection
• ReductionRegisterMsg
• ReductionSet
• ReductionSetData
• ReductionSubmitMsg
• RegisterProxyMsg
• RequireReduction
• ResidueLookupElem
• ResizeArray< Elem >
  • SortableResizeArray< Elem >
    • SortedArray< Elem >
      • UniqueSortedArray< Elem >
• ResizeArray< AngleElem >
• ResizeArray< AnisoElem >
• ResizeArray< BondElem >
• ResizeArray< CrosstermElem >
• ResizeArray< DihedralElem >
• ResizeArray< ExclElem >
• ResizeArray< ImproperElem >
• ResizeArray< TholeElem >
• ResizeArrayIter< T >
• ResizeArrayPrimIter< T >
• ResizeArrayRaw< Elem >
• ResizeArrayRaw< AngleElem >
• ResizeArrayRaw< AnisoElem >
• ResizeArrayRaw< BondElem >
• ResizeArrayRaw< CrosstermElem >
• ResizeArrayRaw< DihedralElem >
• ResizeArrayRaw< ExclElem >
• ResizeArrayRaw< ImproperElem >
• ResizeArrayRaw< TholeElem >
• Results
• ScriptParamMsg
• ScriptTcl
• seg_resid
• Sequencer
• SetLatticeMsg
• SimParameters
• SlaveInitMsg
• sortop_base
  • sortop_x
  • sortop_y
  • sortop_z
• StreamMessage
• StringList
• SubmitReduction
• table_pair_params
• TaggedMsg
• Tensor
• thole
• TholeElem
• Transform
• TuplePatchElem
• TupleSignature
• UniqueSet< Elem >
• UniqueSet< TuplePatchElem >
• UniqueSetIter< T >
• UniqueSetRaw< Elem >
• UniqueSetRaw< TuplePatchElem >
• UnregisterProxyMsg
• vdw_pair_params
• vdw_params
• vdw_val
• VDWTable
• vect
• Vector
  • AlignVector
  • zVector
• vmdforce
• wkf_timer
• wkfmsgtimer

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