NAMD Class Hierarchy
This inheritance list is sorted roughly, but not completely, alphabetically:
- __sort_entry
- AGroup
- ALambdaControl
- ALambdaManager
- angle
- angle_params
- AngleElem
- AngleTable
- AngleValue
- aniso
- AnisoElem
- ARestraint
- ARestraintManager
- msm::Array< T >
- Array< Elem, Size >
- msm::Array< C1Matrix >
- msm::Array< C1Vector >
- msm::Array< float >
- assert_ProxyResultVarsizeMsg
- atom_constants
- atom_name_info
- msm::AtomCoord
- AtomCstInfo
- atomID_less
- AtomMap
- AtomMapper
- AtomNameIdx
- AtomsCntPerPatchMsg
- AtomSigInfo
- AtomSignature
- AtomTable
- AVector
- BackEnd
- BasicAtomInfo
- msm::BlockDiagram
- msm::BlockIndex
- msm::BlockSend
- BOCgroup
- BOID
- bond
- bond_params
- BondElem
- BondTable
- BondValue
- BoundingBox
- Box< Owner, Data >
- BroadcastClient
- BroadcastClientElem
- BroadcastMgr
- BroadcastMsg
- C1Matrix
- C1Vector
- CBase_OptPmeXPencil
- CBase_OptPmeYPencil
- CBase_OptPmeZPencil
- CBase_PmeXPencil
- CBase_PmeYPencil
- CBase_PmeZPencil
- CheckpointAtomsMsg
- CheckpointAtomsReqMsg
- CheckpointMsg
- CkCallbackWrapper
- ClusterCoorElem
- ClusterCoorMsg
- ClusterElem
- ClusterSizeMsg
- CollectionMaster
- CollectionMaster::CollectVectorInstance
- CollectionMaster::CollectVectorSequence
- CollectionMgr
- CollectionMgr::CollectVectorInstance
- CollectionMgr::CollectVectorSequence
- CollectLoadsMsg
- CollectVectorMsg
- CollectVectorVarMsg
- Communicate
- CompAtom
- CompAtomExt
- Compute
- ComputeHomePatch
- ComputeHomePatches
- ComputeHomeTuples< T, S, P >
- ComputeAngles
- ComputeAniso
- ComputeBonds
- ComputeCrossterms
- ComputeDihedrals
- ComputeGromacsPair
- ComputeImpropers
- ComputeSelfTuples< T, S, P >
- ComputeSelfTuples< AngleElem, angle, AngleValue >
- ComputeSelfTuples< AnisoElem, aniso, aniso >
- ComputeSelfTuples< BondElem, bond, BondValue >
- ComputeSelfTuples< CrosstermElem, crossterm, CrosstermValue >
- ComputeSelfTuples< DihedralElem, dihedral, DihedralValue >
- ComputeSelfTuples< ExclElem, Exclusion, int >
- ComputeSelfTuples< GromacsPairElem, gromacsPair, GromacsPairValue >
- ComputeSelfTuples< ImproperElem, improper, ImproperValue >
- ComputeSelfTuples< TholeElem, thole, thole >
- ComputeThole
- ComputeHomeTuples< AngleElem, angle, AngleValue >
- ComputeHomeTuples< AnisoElem, aniso, aniso >
- ComputeHomeTuples< BondElem, bond, BondValue >
- ComputeHomeTuples< CrosstermElem, crossterm, CrosstermValue >
- ComputeHomeTuples< DihedralElem, dihedral, DihedralValue >
- ComputeHomeTuples< ExclElem, Exclusion, int >
- ComputeHomeTuples< GromacsPairElem, gromacsPair, GromacsPairValue >
- ComputeHomeTuples< ImproperElem, improper, ImproperValue >
- ComputeHomeTuples< TholeElem, thole, thole >
- ComputeLCPO
- ComputeNonbondedCUDA
- ComputeNonbondedMIC
- ComputePatch
- ComputePatchPair
- ComputePme
- ComputePmeCUDA
- CudaComputeNonbonded
- ComputeBondedCUDAKernel
- ComputeBondedCUDAKernel::BondedVirial< T >
- ComputeConsForceMsg
- ComputeCUDAMgr
- ComputeDPMEDataMsg
- ComputeDPMEResultsMsg
- ComputeEwaldMsg
- ComputeExtAtom
- ComputeExtMgr
- ComputeFmmSerialAtom
- ComputeFmmSerialMgr
- ComputeGBISAtom
- ComputeGBISserMgr
- ComputeGlobalDataMsg
- ComputeGlobalResultsMsg
- ComputeMap
- ComputeMap::ComputeData
- ComputeMap::PatchRec
- ComputeMapChangeMsg
- ComputeMapMsg
- ComputeMgr
- ComputeMsmMgr
- ComputeMsmSerialAtom
- ComputeMsmSerialMgr
- ComputeNonbondedCUDA::compute_record
- ComputeNonbondedCUDA::patch_record
- ComputeNonbondedMIC::compute_record
- ComputeNonbondedMIC::patch_record
- ComputeNonbondedUtil
- ComputeNonbondedWorkArrays
- ComputePmeCUDADevice
- ComputePmeCUDAMgr
- ComputePmeMgr
- ComputePmeMgr::cuda_submit_charges_args
- ComputeQMAtom
- ComputeQMMgr
- ComputeQMPntChrg
- ConfigList
- ConfigList::ConfigListNode
- Controller::checkpoint
- ControllerBroadcasts
- ControllerState
- cptr_sortop_priority
- cr_sortop_distance
- cr_sortop_reverse_priority
- crossterm
- crossterm_params
- CrosstermData
- CrosstermElem
- CrosstermValue
- cuda_args_t
- CudaAngle
- CudaAngleValue
- CudaAtom
- CudaBond
- CudaBondValue
- CudaComputeGBISKernel
- CudaComputeNonbonded::ComputeRecord
- CudaComputeNonbonded::PatchRecord
- CudaComputeNonbondedKernel
- CudaComputeNonbondedMsg
- CudaComputeRecord
- CudaCrossterm
- CudaCrosstermValue
- CudaDihedral
- CudaDihedralValue
- CudaExclusion
- CudaForce
- CudaNonbondedTables
- CudaPatchRecord
- CudaPmePencilX
- CudaPmePencilXY
- CudaPmePencilXYZ
- CudaPmePencilY
- CudaPmePencilZ
- CudaPmeXInitMsg
- CudaPmeXYInitMsg
- CudaPmeXYZInitMsg
- CudaStaticAssert< true >
- CudaTileListKernel
- DataExchanger
- DataMessage
- datastream
- DataStreamMsg
- DeviceBuffer
- DeviceCUDA
- DeviceDataMsg
- dihedral
- dihedral_params
- DihedralElem
- DihedralTable
- DihedralValue
- doublecomplex
- drude_constants
- dummyData
- eABF
- Entry< Elem >
- EntryGlob< Elem >
- EwaldParticle
- ExchangeAtomsMsg
- ExchangeAtomsReqMsg
- exclmask
- ExclSigInfo
- Exclusion
- ExclusionCheck
- ExclusionSignature
- exlist_sortop
- ExtCoordMsg
- ExtForce
- ExtForceMsg
- FFTCompute
- FileStack
- FinishWorkMsg
- Flags
- float2
- floatcomplex
- FloatVector
- FmmSerialCoordMsg
- FmmSerialForceMsg
- msm::FoldFactor
- four_body_consts
- gather_t< T, order >
- GBISCoordMsg
- GBISForceMsg
- GBISInput< phase >
- GBISInput< 1 >
- GBISInput< 2 >
- GBISInput< 3 >
- GBISParam< phase >
- GBISParam< 1 >
- GBISParam< 2 >
- GBISParam< 3 >
- GBISParamStruct
- GBISResults< phase >
- GBISResults< 1 >
- GBISResults< 2 >
- GBISResults< 3 >
- GenericAngle
- GenericAtom
- GenericBond
- GenericDihedral
- GenericMol
- GlobalMaster
- GlobalMasterServer
- go_pair
- go_val
- GridforceFullBaseGrid
- GridforceFullBaseGrid::GridIndices
- GridforceGrid
- GridMsg
- GroGaussPair
- GroLJPair
- gromacsPair
- GromacsPairElem
- GromacsPairValue
- GromacsTopFile
- GroupInitMsg
- HashPool< T >
- HashPoolAdaptorT< T >
- HashReal
- HashString
- heapIterator
- heapRecord
- HomePatch::checkpoint_t
- HomePatch::RattleList
- HomePatchElem
- HydroBasedMsg
- HydrogenGroupID
- idIndxStr
- ijpair
- ijpair_sortop_bit_reversed
- IMDEnergies
- IMDheader
- IMDOutput
- improper
- improper_params
- ImproperElem
- ImproperValue
- indexed_nbthole_pair
- indexed_table_pair
- indexed_vdw_pair
- msm::IndexRange
- InfoRecord
- infostream
- InitDeviceMsg
- InitDeviceMsg2
- Int2
- Int3
- InterpParams_t
- intpair
- IRSet
- Iterator
- msm::Ivec
- Lattice
- LCPOAtom
- LCPONeighborList
- LdbCoordinator
- LdbMigrateMsg
- listNode
- LJTable
- LJTable::TableEntry
- LocalID
- LocalLBInfoMsg
- LocalPmeInfo
- LocalWorkMsg
- lphost
- LSSDataStr
- lssDistSort
- LSSSubsDat
- main
- msm::Map
- Matrix4
- Matrix4Symmetry
- Matrix4TMD
- maxHeap
- Measure
- meMMQMGrp
- memusageinit
- MGridforceParams
- MGridforceParamsList
- MigrateAtomsCombinedMsg
- MigrateAtomsMsg
- MigrationInfo
- minHeap
- minpoint
- MIStream
- MoaData
- Molecule
- MolInfoMsg
- MolInst
- MOStream
- MoveAllByMsg
- MoveAtomMsg
- MoveInputAtomsMsg
- MovePatch
- MovePatchAtomsMsg
- MovePatchesMsg
- MsmBlockKernel< Vtype, Mtype >
- MsmBlockKernel< C1Vector, C1Matrix >
- MsmBlockKernel< float, float >
- MsmBlockMap
- MsmBlockProxyMsg
- MsmC1HermiteBlockProxyMsg
- MsmC1HermiteGridCutoffProxyMsg
- MsmC1HermiteGridCutoffSetupMsg
- MsmGridCutoffInitMsg
- MsmGridCutoffKernel< Vtype, Mtype >
- MsmGridCutoffKernel< C1Vector, C1Matrix >
- MsmGridCutoffKernel< float, float >
- MsmGridCutoffMap
- MsmGridCutoffProxyMsg
- MsmGridCutoffSetupMsg
- MsmInitMsg
- MsmProfiler
- MsmSerialCoordMsg
- MsmSerialForceMsg
- MsmTimer
- NamdCentLB
- NamdDummyLB
- NamdHybridLB
- NamdNborLB
- NamdState
- nbthole_pair_params
- nbthole_pair_value
- netint
- NL_Msm_t
- Node
- NodePmeInfo
- NodePmeMgr
- NodeProxyMgr
- nodesort
- nonbonded
- NonbondedCUDASkipMsg
- NonbondedCUDASlaveMsg
- NonbondedExclValue
- NonbondedMICSkipMsg
- NonbondedMICSlaveMsg
- NumDevicesMsg
- ObjectArena< Type >
- ofstream_namd
- OptPmeDummyMsg
- OptPmeFFTMsg
- OptPmeGridMsg
- OptPmeMgr
- OptPmePencil< T >
- OptPmePencilInitMsg
- OptPmePencilInitMsgData
- OptPmePencilMapX
- OptPmePencilMapY
- OptPmePencilMapZ
- OptPmeRealSpace
- OptPmeSubComputeMsg
- Output
- OutputAtomRecord
- OutputAtomRecord::floatVals
- OutputAtomRecord::integerVals
- OutputAtomRecord::shortVals
- OwnerBox< Owner, Data >
- Pairlists
- PairTable
- PAL
- ParallelIOMgr
- Parameters
- parm
- ParseOptions
- ParseOptions::DataElement
- Patch
- patch_sortop_curve_a
- patch_sortop_curve_b
- patch_sortop_curve_c
- msm::PatchData
- patchDataStrc
- msm::PatchDiagram
- PatchElem
- PatchGridElem
- PatchInfo
- PatchMap
- PatchMapMsg
- PatchMgr
- PatchPairRecord
- PatchProxyListMsg
- msm::PatchSend
- PDB
- PDBData
- pe_sortop_bit_reversed
- pe_sortop_coord_x
- pe_sortop_coord_y
- PencilElement
- pid_sortop_reverse_priority
- PluginIOMgr
- PmeAckMsg
- PmeAtomFiler
- PmeAtomMsg
- PmeAtomPencilMsg
- PmeAtomStorage
- PmeBlockMsg
- PmeDoneMsg
- PmeEvirMsg
- PmeFFTInfo
- PmeForceMsg
- PmeForcePencilMsg
- PmeGrid
- PmeGridMsg
- PmeKSpace
- PmeKSpaceCompute
- PmeLaunchMsg
- PmeParticle
- PmePencil< T >
- PmePencilInitMsg
- PmePencilInitMsgData
- PmePencilMap
- PmePencilX
- PmePencilXMap
- PmePencilXY
- PmePencilXYMap
- PmePencilXYZ
- PmePencilXYZMap
- PmePencilY
- PmePencilZ
- PmeRealSpace
- PmeRealSpaceCompute
- PmeRunMsg
- PmeSelfEnergyMsg
- PmeSharedTransMsg
- PmeSharedUntransMsg
- PmeStartMsg
- PmeTransMsg
- PmeTranspose
- PmeUntransMsg
- pntChrgDist
- Pointer
- position_index
- PressureProfileReduction
- msm::PriorityQueue< T >
- ProxyCombinedResultMsg
- ProxyCombinedResultRawMsg
- ProxyDataMsg
- ProxyElem
- ProxyGBISP1ResultMsg
- ProxyGBISP2DataMsg
- ProxyGBISP2ResultMsg
- ProxyGBISP3DataMsg
- ProxyListInfo
- ProxyMgr
- ProxyNodeAwareSpanningTreeMsg
- ProxyResultMsg
- ProxyResultVarsizeMsg
- ProxySpanningTreeMsg
- ProxyTree
- proxyTreeNode
- ProxyUsage
- ProxyUsageKey
- QMAtomData
- QMCoordMsg
- QMForce
- QMForceMsg
- QMGrpCalcMsg
- QMGrpResMsg
- QMPntChrgMsg
- qmSolvData
- Random
- RattleParam
- Rebalancer
- Rebalancer::pcpair
- RecBisection
- RecipVirial_t
- RecvDeviceMsg
- ReductionMgr
- ReductionRegisterMsg
- ReductionSet
- ReductionSetData
- ReductionSubmitMsg
- refSelStr
- RegisterPatchMsg
- RegisterProxyMsg
- ReplicaDcdAckMsg
- ReplicaDcdDataMsg
- ReplicaDcdInitMsg
- RequireReduction
- ResidueLookupElem
- ResizeArray< Elem >
- ResizeArray< AngleElem >
- ResizeArray< AnisoElem >
- ResizeArray< BondElem >
- ResizeArray< CrosstermElem >
- ResizeArray< DihedralElem >
- ResizeArray< ExclElem >
- ResizeArray< GromacsPairElem >
- ResizeArray< ImproperElem >
- ResizeArray< TholeElem >
- ResizeArrayIter< T >
- ResizeArrayPrimIter< T >
- ResizeArrayRaw< Elem >
- ResizeArrayRaw< AngleElem >
- ResizeArrayRaw< AnisoElem >
- ResizeArrayRaw< BondElem >
- ResizeArrayRaw< CrosstermElem >
- ResizeArrayRaw< DihedralElem >
- ResizeArrayRaw< ExclElem >
- ResizeArrayRaw< GromacsPairElem >
- ResizeArrayRaw< ImproperElem >
- ResizeArrayRaw< TholeElem >
- Results
- ScriptParamMsg
- ScriptTcl
- seg_resid
- Sequencer
- SetLatticeMsg
- SimParameters
- SlaveInitMsg
- sortop_base
- sortop_bit_reversed
- SplitComputesMsg
- StreamMessage
- StringList
- SubmitReduction
- Sync
- table_pair_params
- TaggedMsg
- Tensor
- thole
- TholeElem
- TileExcl
- TileList
- TileListStat
- TileListVirialEnergy
- TopoManagerWrapper
- TopoManagerWrapper::pe_sortop_topo
- Transform
- TransposeBatch< T >
- TuplePatchElem
- TupleSignature
- UniqueSet< Elem >
- UniqueSetIter< T >
- UniqueSetRaw< Elem >
- UnregisterProxyMsg
- vdw_pair_params
- vdw_params
- vdw_val
- VDWTable
- vect
- Vector
- VirialEnergy
- vmdforce
- wkf_timer
- wkfmsgtimer
- WorkDistrib
- WorkDistrib::pe_sortop_compact
- WorkDistrib::pe_sortop_diffuse
- WorkIndex
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