| C__sort_entry | |
| CAGroup | |
| CALambdaControl | |
| CALambdaManager | |
| CAlchData | Alchemical datastructure that holds the lambda-relevant paramenters for FEP/TI |
| CAmbertoppar | |
| CAmberParm7Reader::Ambertoppar | |
| Cangle | |
| Cangle_params | |
| CAngleElem | |
| CAngleTable | |
| CAngleValue | |
| Caniso | |
| CAnisoElem | |
| ▶CARestraint | |
| ▶CADiheRestraint | |
| CABoundDiheRestraint | |
| CAFixedDiheRestraint | |
| CAForcingDiheRestraint | |
| ▶CADistRestraint | |
| CABoundDistRestraint | |
| CAFixedDistRestraint | |
| CAForcingDistRestraint | |
| ▶CAnAngleRestraint | |
| CABoundAngleRestraint | |
| CAFixedAngleRestraint | |
| CAForcingAngleRestraint | |
| ▶CAPosRestraint | |
| CABoundPosRestraint | |
| CAFixedPosRestraint | |
| CAForcingPosRestraint | |
| CARestraintManager | |
| Cmsm::Array< T > | |
| ▶CArray< Elem, Size > | |
| CMathArray< Elem, Size > | |
| Cmsm::Array< AtomCoord > | |
| Cmsm::Array< C1Matrix > | |
| Cmsm::Array< C1Vector > | |
| Cmsm::Array< CProxy_MsmBlock > | |
| Cmsm::Array< CProxy_MsmC1HermiteBlock > | |
| ▶CArray< double, Size > | |
| CMathArray< double, 7 > | |
| Cmsm::Array< Float > | |
| Cmsm::Array< Force > | |
| Cmsm::Array< int > | |
| Cmsm::Array< msm::BlockDiagram > | |
| Cmsm::Array< msm::BlockSend > | |
| Cmsm::Array< msm::FoldFactor > | |
| Cmsm::Array< msm::Grid< C1Matrix > > | |
| Cmsm::Array< msm::Grid< Float > > | |
| Cmsm::Array< msm::Grid< msm::BlockDiagram > > | |
| Cmsm::Array< msm::IndexRange > | |
| Cmsm::Array< msm::PatchDiagram > | |
| Cmsm::Array< msm::PatchSend > | |
| Cmsm::Array< Mtype > | |
| CArray< PatchData * > | |
| Cmsm::Array< Vtype > | |
| Cassert_ProxyResultVarsizeMsg | |
| Catom_constants | |
| Catom_name_info | |
| Cmsm::AtomCoord | |
| CAtomCstInfo | |
| CatomData | |
| CatomID_less | |
| CAtomMap | |
| CAtomMapper | |
| CAtomNameIdx | |
| CAtomSigInfo | |
| CAtomSignature | |
| CAtomTable | |
| CAVector | |
| CBackEnd | |
| CBasicAtomInfo | |
| Cmsm::BlockDiagram | |
| Cmsm::BlockIndex | |
| Cmsm::BlockSend | |
| CBOCgroup | |
| CBOID | |
| Cbond | |
| Cbond_params | |
| CComputeBondedCUDAKernel::BondedVirial< T > | |
| CBondElem | |
| CBondTable | |
| CBondValue | |
| CBoundingBox | |
| CBox< Owner, Data > | |
| CBox< Patch, CompAtom > | |
| CBox< Patch, GBReal > | |
| CBox< Patch, int > | |
| CBox< Patch, Real > | |
| CBox< Patch, Results > | |
| ▶CBroadcastClient | |
| CSimpleBroadcastObject< T > | |
| CSimpleBroadcastObject< BigReal > | |
| CSimpleBroadcastObject< int > | |
| CSimpleBroadcastObject< Tensor > | |
| CSimpleBroadcastObject< Vector > | |
| CBroadcastClientElem | |
| CC1Matrix | |
| CC1Vector | |
| ▶CCBase_BroadcastMgr | |
| CBroadcastMgr | |
| ▶CCBase_CollectionMgr | |
| CCollectionMgr | |
| ▶CCBase_ComputeCUDAMgr | |
| CComputeCUDAMgr | |
| ▶CCBase_ComputeExtMgr | |
| CComputeExtMgr | |
| ▶CCBase_ComputeFmmSerialMgr | |
| CComputeFmmSerialMgr | |
| ▶CCBase_ComputeGBISserMgr | |
| CComputeGBISserMgr | |
| ▶CCBase_ComputeLjPmeSerialMgr | |
| CComputeLjPmeSerialMgr | |
| ▶CCBase_ComputeMgr | |
| CComputeMgr | |
| ▶CCBase_ComputeMsmMgr | |
| CComputeMsmMgr | |
| ▶CCBase_ComputeMsmSerialMgr | |
| CComputeMsmSerialMgr | |
| ▶CCBase_ComputePmeCUDADevice | |
| CComputePmeCUDADevice | |
| ▶CCBase_ComputePmeCUDAMgr | |
| CComputePmeCUDAMgr | |
| ▶CCBase_ComputePmeMgr | |
| CComputePmeMgr | |
| ▶CCBase_ComputeQMMgr | |
| CComputeQMMgr | |
| ▶CCBase_CudaPmePencilX | |
| CCudaPmePencilX | |
| ▶CCBase_CudaPmePencilXY | |
| CCudaPmePencilXY | |
| ▶CCBase_CudaPmePencilXYZ | |
| CCudaPmePencilXYZ | |
| ▶CCBase_CudaPmePencilY | |
| CCudaPmePencilY | |
| ▶CCBase_CudaPmePencilZ | |
| CCudaPmePencilZ | |
| ▶CCBase_DataExchanger | |
| CDataExchanger | |
| ▶CCBase_LdbCoordinator | |
| CLdbCoordinator | |
| ▶CCBase_MsmBlock | |
| CMsmBlock | |
| ▶CCBase_MsmC1HermiteBlock | |
| CMsmC1HermiteBlock | |
| ▶CCBase_MsmC1HermiteGridCutoff | |
| CMsmC1HermiteGridCutoff | |
| ▶CCBase_MsmGridCutoff | |
| CMsmGridCutoff | |
| ▶CCBase_MsmProfiler | |
| CMsmProfiler | |
| ▶CCBase_MsmTimer | |
| CMsmTimer | |
| ▶CCBase_Node | |
| CNode | |
| ▶CCBase_NodePmeMgr | |
| CNodePmeMgr | |
| ▶CCBase_NodeProxyMgr | |
| CNodeProxyMgr | |
| ▶CCBase_ParallelIOMgr | |
| CParallelIOMgr | |
| ▶CCBase_PatchData | |
| CPatchData | |
| ▶CCBase_PatchMgr | |
| CPatchMgr | |
| ▶CCBase_PmeAtomFiler | |
| CPmeAtomFiler | |
| ▶CCBase_PmePencilMap | |
| CPmePencilMap | |
| ▶CCBase_PmePencilX | |
| CPmePencilX | |
| ▶CCBase_PmePencilXMap | |
| CPmePencilXMap | |
| ▶CCBase_PmePencilXY | |
| CPmePencilXY | |
| ▶CCBase_PmePencilXYMap | |
| CPmePencilXYMap | |
| ▶CCBase_PmePencilXYZ | |
| CPmePencilXYZ | |
| ▶CCBase_PmePencilXYZMap | |
| CPmePencilXYZMap | |
| ▶CCBase_PmePencilY | |
| CPmePencilY | |
| ▶CCBase_PmePencilZ | |
| CPmePencilZ | |
| ▶CCBase_PmeXPencil | |
| ▶CPmePencil< CBase_PmeXPencil > | |
| CPmeXPencil | |
| ▶CCBase_PmeYPencil | |
| ▶CPmePencil< CBase_PmeYPencil > | |
| CPmeYPencil | |
| ▶CCBase_PmeZPencil | |
| ▶CPmePencil< CBase_PmeZPencil > | |
| CPmeZPencil | |
| ▶CCBase_ProxyMgr | |
| CProxyMgr | |
| ▶CCBase_Sync | |
| CSync | |
| ▶CCBase_WorkDistrib | |
| CWorkDistrib | |
| ▶CCentralLB | |
| CNamdCentLB | |
| CNamdDummyLB | |
| ▶CChare | |
| CCollectionMaster | |
| Cmain | |
| CController::checkpoint | |
| CHomePatch::checkpoint_t | |
| CCheckStep | |
| ▶CCkArrayMap | |
| CMsmBlockMap | |
| CMsmGridCutoffMap | |
| ▶CCkMcastBaseMsg | |
| CGridMsg | |
| CMsmC1HermiteGridCutoffSetupMsg | |
| CMsmGridCutoffSetupMsg | |
| CClusterCoorElem | |
| CClusterElem | |
| ▶CCMessage_AtomsCntPerPatchMsg | |
| CAtomsCntPerPatchMsg | |
| ▶CCMessage_BroadcastMsg | |
| CBroadcastMsg | |
| ▶CCMessage_CheckpointAtomsMsg | |
| CCheckpointAtomsMsg | |
| ▶CCMessage_CheckpointAtomsReqMsg | |
| CCheckpointAtomsReqMsg | |
| ▶CCMessage_CheckpointMsg | |
| CCheckpointMsg | |
| ▶CCMessage_ClusterCoorMsg | |
| CClusterCoorMsg | |
| ▶CCMessage_ClusterSizeMsg | |
| CClusterSizeMsg | |
| ▶CCMessage_CollectLoadsMsg | |
| CCollectLoadsMsg | |
| ▶CCMessage_CollectVectorMsg | |
| CCollectVectorMsg | |
| ▶CCMessage_CollectVectorVarMsg | |
| CCollectVectorVarMsg | |
| ▶CCMessage_ComputeConsForceMsg | |
| CComputeConsForceMsg | |
| ▶CCMessage_ComputeDPMEDataMsg | |
| CComputeDPMEDataMsg | |
| ▶CCMessage_ComputeDPMEResultsMsg | |
| CComputeDPMEResultsMsg | |
| ▶CCMessage_ComputeEwaldMsg | |
| CComputeEwaldMsg | |
| ▶CCMessage_ComputeGlobalDataMsg | |
| CComputeGlobalDataMsg | |
| ▶CCMessage_ComputeGlobalResultsMsg | |
| CComputeGlobalResultsMsg | |
| ▶CCMessage_ComputeMapChangeMsg | |
| CComputeMapChangeMsg | |
| ▶CCMessage_CudaComputeNonbondedMsg | |
| CCudaComputeNonbondedMsg | |
| ▶CCMessage_CudaPmeXInitMsg | |
| CCudaPmeXInitMsg | |
| ▶CCMessage_CudaPmeXYInitMsg | |
| CCudaPmeXYInitMsg | |
| ▶CCMessage_CudaPmeXYZInitMsg | |
| CCudaPmeXYZInitMsg | |
| ▶CCMessage_DataStreamMsg | |
| CDataStreamMsg | |
| ▶CCMessage_DeviceDataMsg | |
| CDeviceDataMsg | |
| ▶CCMessage_ExchangeAtomsMsg | |
| CExchangeAtomsMsg | |
| ▶CCMessage_ExchangeAtomsReqMsg | |
| CExchangeAtomsReqMsg | |
| ▶CCMessage_ExtCoordMsg | |
| CExtCoordMsg | |
| ▶CCMessage_ExtForceMsg | |
| CExtForceMsg | |
| ▶CCMessage_FinishWorkMsg | |
| CFinishWorkMsg | |
| ▶CCMessage_FmmSerialCoordMsg | |
| CFmmSerialCoordMsg | |
| ▶CCMessage_FmmSerialForceMsg | |
| CFmmSerialForceMsg | |
| ▶CCMessage_GBISCoordMsg | |
| CGBISCoordMsg | |
| ▶CCMessage_GBISForceMsg | |
| CGBISForceMsg | |
| ▶CCMessage_GMWakeMsg | |
| CGMWakeMsg | |
| ▶CCMessage_GridMsg | |
| CGridMsg | |
| ▶CCMessage_GroupInitMsg | |
| CGroupInitMsg | |
| ▶CCMessage_HydroBasedMsg | |
| CHydroBasedMsg | |
| ▶CCMessage_InitDeviceMsg | |
| CInitDeviceMsg | |
| ▶CCMessage_InitDeviceMsg2 | |
| CInitDeviceMsg2 | |
| ▶CCMessage_LdbMigrateMsg | |
| CLdbMigrateMsg | |
| ▶CCMessage_LjPmeSerialCoordMsg | |
| CLjPmeSerialCoordMsg | |
| ▶CCMessage_LjPmeSerialForceMsg | |
| CLjPmeSerialForceMsg | |
| ▶CCMessage_LocalLBInfoMsg | |
| CLocalLBInfoMsg | |
| ▶CCMessage_LocalWorkMsg | |
| CLocalWorkMsg | |
| ▶CCMessage_MigrateAtomsCombinedMsg | |
| CMigrateAtomsCombinedMsg | |
| ▶CCMessage_MigrateAtomsMsg | |
| CMigrateAtomsMsg | |
| ▶CCMessage_MolInfoMsg | |
| CMolInfoMsg | |
| ▶CCMessage_MoveAllByMsg | |
| CMoveAllByMsg | |
| ▶CCMessage_MoveAtomMsg | |
| CMoveAtomMsg | |
| ▶CCMessage_MoveInputAtomsMsg | |
| CMoveInputAtomsMsg | |
| ▶CCMessage_MovePatchAtomsMsg | |
| CMovePatchAtomsMsg | |
| ▶CCMessage_MovePatchesMsg | |
| CMovePatchesMsg | |
| ▶CCMessage_MsmBlockProxyMsg | |
| CMsmBlockProxyMsg | |
| ▶CCMessage_MsmC1HermiteBlockProxyMsg | |
| CMsmC1HermiteBlockProxyMsg | |
| ▶CCMessage_MsmC1HermiteGridCutoffProxyMsg | |
| CMsmC1HermiteGridCutoffProxyMsg | |
| ▶CCMessage_MsmC1HermiteGridCutoffSetupMsg | |
| CMsmC1HermiteGridCutoffSetupMsg | |
| ▶CCMessage_MsmGridCutoffInitMsg | |
| CMsmGridCutoffInitMsg | |
| ▶CCMessage_MsmGridCutoffProxyMsg | |
| CMsmGridCutoffProxyMsg | |
| ▶CCMessage_MsmGridCutoffSetupMsg | |
| CMsmGridCutoffSetupMsg | |
| ▶CCMessage_MsmInitMsg | |
| CMsmInitMsg | |
| ▶CCMessage_MsmSerialCoordMsg | |
| CMsmSerialCoordMsg | |
| ▶CCMessage_MsmSerialForceMsg | |
| CMsmSerialForceMsg | |
| ▶CCMessage_NumDevicesMsg | |
| CNumDevicesMsg | |
| ▶CCMessage_PatchMapMsg | |
| CPatchMapMsg | |
| ▶CCMessage_PatchProxyListMsg | |
| CPatchProxyListMsg | |
| ▶CCMessage_PmeAckMsg | |
| CPmeAckMsg | |
| ▶CCMessage_PmeAtomMsg | |
| CPmeAtomMsg | |
| ▶CCMessage_PmeAtomPencilMsg | |
| CPmeAtomPencilMsg | |
| ▶CCMessage_PmeBlockMsg | |
| CPmeBlockMsg | |
| ▶CCMessage_PmeDoneMsg | |
| CPmeDoneMsg | |
| ▶CCMessage_PmeEvirMsg | |
| CPmeEvirMsg | |
| ▶CCMessage_PmeForceMsg | |
| CPmeForceMsg | |
| ▶CCMessage_PmeForcePencilMsg | |
| CPmeForcePencilMsg | |
| ▶CCMessage_PmeGridMsg | |
| CPmeGridMsg | |
| ▶CCMessage_PmeLaunchMsg | |
| CPmeLaunchMsg | |
| ▶CCMessage_PmePencilInitMsg | |
| CPmePencilInitMsg | |
| ▶CCMessage_PmeRunMsg | |
| CPmeRunMsg | |
| ▶CCMessage_PmeSharedTransMsg | |
| CPmeSharedTransMsg | |
| ▶CCMessage_PmeSharedUntransMsg | |
| CPmeSharedUntransMsg | |
| ▶CCMessage_PmeStartMsg | |
| CPmeStartMsg | |
| ▶CCMessage_PmeTransMsg | |
| CPmeTransMsg | |
| ▶CCMessage_PmeUntransMsg | |
| CPmeUntransMsg | |
| ▶CCMessage_ProxyCombinedResultMsg | |
| CProxyCombinedResultMsg | |
| ▶CCMessage_ProxyCombinedResultRawMsg | |
| CProxyCombinedResultRawMsg | |
| ▶CCMessage_ProxyDataMsg | |
| CProxyDataMsg | |
| ▶CCMessage_ProxyGBISP1ResultMsg | |
| CProxyGBISP1ResultMsg | |
| ▶CCMessage_ProxyGBISP2DataMsg | |
| CProxyGBISP2DataMsg | |
| ▶CCMessage_ProxyGBISP2ResultMsg | |
| CProxyGBISP2ResultMsg | |
| ▶CCMessage_ProxyGBISP3DataMsg | |
| CProxyGBISP3DataMsg | |
| ▶CCMessage_ProxyNodeAwareSpanningTreeMsg | |
| CProxyNodeAwareSpanningTreeMsg | |
| ▶CCMessage_ProxyResultMsg | |
| CProxyResultMsg | |
| ▶CCMessage_ProxyResultVarsizeMsg | |
| CProxyResultVarsizeMsg | |
| ▶CCMessage_ProxySpanningTreeMsg | |
| CProxySpanningTreeMsg | |
| ▶CCMessage_QMCoordMsg | |
| CQMCoordMsg | |
| ▶CCMessage_QMForceMsg | |
| CQMForceMsg | |
| ▶CCMessage_QMGrpCalcMsg | |
| CQMGrpCalcMsg | |
| ▶CCMessage_QMGrpResMsg | |
| CQMGrpResMsg | |
| ▶CCMessage_QMPntChrgMsg | |
| CQMPntChrgMsg | |
| ▶CCMessage_RecvDeviceMsg | |
| CRecvDeviceMsg | |
| ▶CCMessage_ReductionRegisterMsg | |
| CReductionRegisterMsg | |
| ▶CCMessage_ReductionSubmitMsg | |
| CReductionSubmitMsg | |
| ▶CCMessage_RegisterPatchMsg | |
| CRegisterPatchMsg | |
| ▶CCMessage_RegisterProxyMsg | |
| CRegisterProxyMsg | |
| ▶CCMessage_ScriptParamMsg | |
| CScriptParamMsg | |
| ▶CCMessage_SetLatticeMsg | |
| CSetLatticeMsg | |
| ▶CCMessage_SlaveInitMsg | |
| CSlaveInitMsg | |
| ▶CCMessage_SplitComputesMsg | |
| CSplitComputesMsg | |
| ▶CCMessage_UnregisterProxyMsg | |
| CUnregisterProxyMsg | |
| CCollectProxyVectorInstance | |
| CCollectProxyVectorSequence | |
| ▶CCollectionMaster::CollectVectorInstance | |
| CCollectionMaster::CollectVectorInstanceDcdSelection | |
| CCollectionMgr::CollectVectorInstance | |
| CCollectionMgr::CollectVectorSequence | |
| ▶CCollectionMaster::CollectVectorSequence | |
| CCollectionMaster::CollectVectorSequenceDcdSelection | |
| ▶Ccolvarproxy | |
| Ccolvarproxy_namd | Communication between colvars and NAMD (implementation of colvarproxy) |
| CCommunicate | |
| ▶CCompAtom | |
| ▶CFullAtom | |
| CInputAtom | |
| ▶CCompAtomExt | |
| CFullAtom | |
| CCompAtomExtCopy | |
| ▶CCompute | |
| ▶CComputeHomePatch | |
| CComputeConsForce | |
| CComputeConsTorque | |
| CComputeCylindricalBC | |
| CComputeEField | |
| CComputeGridForce | |
| CComputeRestraints | |
| CComputeSphericalBC | |
| CComputeStir | |
| ▶CComputeHomePatches | |
| CComputeEwald | |
| CComputeExt | |
| CComputeFmmSerial | |
| CComputeFullDirect | |
| CComputeGBISser | |
| CComputeGlobal | |
| CComputeLjPmeSerial | |
| CComputeMoa | |
| CComputeMsm | |
| CComputeMsmSerial | |
| CComputeQM | |
| CComputeTclBC | |
| ▶CComputeHomeTuples< T, S, P > | |
| CComputeSelfTuples< T, S, P > | |
| ▶CComputeHomeTuples< AngleElem, Angle, AngleValue > | |
| CComputeAngles | |
| ▶CComputeSelfTuples< AngleElem, Angle, AngleValue > | |
| CComputeSelfAngles | |
| ▶CComputeHomeTuples< AnisoElem, Aniso, AnisoValue > | |
| CComputeAniso | |
| ▶CComputeSelfTuples< AnisoElem, Aniso, AnisoValue > | |
| CComputeSelfAniso | |
| ▶CComputeHomeTuples< BondElem, Bond, BondValue > | |
| CComputeBonds | |
| ▶CComputeSelfTuples< BondElem, Bond, BondValue > | |
| CComputeSelfBonds | |
| ▶CComputeHomeTuples< CrosstermElem, Crossterm, CrosstermValue > | |
| CComputeCrossterms | |
| ▶CComputeSelfTuples< CrosstermElem, Crossterm, CrosstermValue > | |
| CComputeSelfCrossterms | |
| ▶CComputeHomeTuples< DihedralElem, Dihedral, DihedralValue > | |
| CComputeDihedrals | |
| ▶CComputeSelfTuples< DihedralElem, Dihedral, DihedralValue > | |
| CComputeSelfDihedrals | |
| ▶CComputeHomeTuples< ExclElem, Exclusion, int > | |
| CComputeExcls | |
| ▶CComputeSelfTuples< ExclElem, Exclusion, int > | |
| CComputeSelfExcls | |
| ▶CComputeHomeTuples< GromacsPairElem, GromacsPair, GromacsPairValue > | |
| CComputeGromacsPair | |
| ▶CComputeSelfTuples< GromacsPairElem, GromacsPair, GromacsPairValue > | |
| CComputeSelfGromacsPair | |
| ▶CComputeHomeTuples< ImproperElem, Improper, ImproperValue > | |
| CComputeImpropers | |
| ▶CComputeSelfTuples< ImproperElem, Improper, ImproperValue > | |
| CComputeSelfImpropers | |
| ▶CComputeHomeTuples< TholeElem, Thole, TholeValue > | |
| ▶CComputeSelfTuples< TholeElem, Thole, TholeValue > | |
| CComputeSelfThole | |
| CComputeThole | |
| CComputeLCPO | |
| ▶CComputePatch | |
| CComputeNonbondedSelf | |
| ▶CComputePatchPair | |
| CComputeNonbondedPair | |
| CComputePme | |
| CComputePmeCUDA | |
| CCudaComputeNonbonded | |
| CComputeBondedCUDAKernel | |
| CComputeMap::ComputeData | |
| CComputeExtAtom | |
| CComputeFmmSerialAtom | |
| CComputeGBISAtom | |
| CComputeLonepairsCUDA | |
| CComputeMap | |
| CComputeMsmSerialAtom | |
| ▶CComputeNonbondedUtil | |
| CComputeLCPO | |
| CComputeNonbondedPair | |
| CComputeNonbondedSelf | |
| CCudaComputeNonbonded | |
| CExclElem | |
| CComputeNonbondedWorkArrays | |
| ▶CComputePmeUtil | |
| CComputePme | |
| CComputePmeMgr | |
| CComputeQMAtom | |
| CComputeQMPntChrg | |
| CCudaComputeNonbonded::ComputeRecord | |
| CConfigList | |
| CConfigList::ConfigListNode | |
| CConstPointer | |
| CconstraintTuple | |
| CControllerBroadcasts | |
| ▶CControllerState | |
| CController | |
| Ccptr_sortop_priority | |
| Ccr_sortop_distance | |
| Ccr_sortop_reverse_priority | |
| Ccrossterm | |
| Ccrossterm_params | |
| CCrosstermData | |
| CCrosstermElem | |
| CCrosstermValue | |
| CController::CthThreadWrapper | |
| Ccuda_args_t | |
| CComputePmeMgr::cuda_submit_charges_args | |
| CCudaAlchFlags | |
| CCudaAlchLambdas | |
| CCudaAlchParameters | |
| CCudaAngle | |
| CCudaAngleStage | |
| CCudaAngleValue | |
| CCudaAtom | |
| CCudaBond | |
| CCudaBondStage | |
| CCudaBondValue | |
| CCudaComputeGBISKernel | |
| CCudaComputeNonbondedKernel | |
| CCudaComputeRecord | |
| CCudaCrossterm | |
| CCudaCrosstermStage | |
| CCudaCrosstermValue | |
| CCudaDihedral | |
| CCudaDihedralStage | |
| CCudaDihedralValue | |
| CCudaExclusion | |
| CCudaExclusionStage | |
| CCudaForce | |
| CCudaGlobalMasterServer | A class for copying atom information from SequencerCUDA to CudaGlobalMasterClient |
| CCudaLocalRecord | |
| CCudaMInfo | |
| CCudaNBConstants | |
| CCudaNonbondedTables | |
| CCudaPatchRecord | |
| CCudaPeerRecord | |
| CCudaPmeOneDevice | |
| CCudaRattleElem | |
| CCudaRattleParam | |
| CCudaStaticAssert< bool > | |
| CCudaStaticAssert< true > | |
| CcudaTensor | |
| CCudaTileListKernel | |
| CcudaVector | |
| CParseOptions::DataElement | |
| CDataMessage | |
| Cdcd_params | |
| CDeviceBuffer | |
| CDeviceCUDA | |
| Cdihedral | |
| Cdihedral_params | |
| CDihedralElem | |
| CDihedralTable | |
| CDihedralValue | |
| ▶Cdlloader::DLLoaderInterface< T > | |
| Cdlloader::DLLoader< T > | |
| Cdoublecomplex | |
| Cdrude_constants | |
| CdummyData | |
| ▶CeABF | |
| CeABF1D | |
| CeABF2D | |
| ▶Cenable_shared_from_this | |
| CCudaGlobalMasterClient | A class for performing calculations on specific atoms selected by atom serial numbers |
| CCudaPmeOneDevice::EnergyVirial | |
| CEntry< Elem > | |
| CEntry< BOID > | |
| CEntry< BroadcastClientElem > | |
| CEntry< ClusterCoorElem > | |
| CEntry< ClusterElem > | |
| CEntry< Exclusion > | |
| CEntry< ProxyElem > | |
| CEntry< T > | |
| CEntry< TaggedMsg > | |
| CEntry< TuplePatchElem > | |
| CEntryGlob< Elem > | |
| CEntryGlob< BOID > | |
| CEntryGlob< BroadcastClientElem > | |
| CEntryGlob< ClusterCoorElem > | |
| CEntryGlob< ClusterElem > | |
| CEntryGlob< Exclusion > | |
| CEntryGlob< ProxyElem > | |
| CEntryGlob< T > | |
| CEntryGlob< TaggedMsg > | |
| CEntryGlob< TuplePatchElem > | |
| CEwaldParticle | |
| CExclSigInfo | |
| CExclusion | |
| CExclusionCheck | |
| CExclusionSignature | |
| Cexlist_sortop | |
| CExtForce | |
| ▶CFFTCompute | |
| CCudaFFTCompute | |
| CFileStack | |
| CFlags | |
| Cfloatcomplex | |
| COutputAtomRecord::floatVals | |
| CFloatVector | |
| Cmsm::FoldFactor | |
| CAmberParm7Reader::FortranData | |
| CAmberParm7Reader::FortranFormatSpecifier | |
| Cfour_body_consts | |
| CGBISParamStruct | |
| CGenericAngle | |
| CGenericAtom | |
| CGenericBond | |
| CGenericDihedral | |
| CGenericMol | |
| ▶CGlobalMaster | |
| Ccolvarproxy_namd | Communication between colvars and NAMD (implementation of colvarproxy) |
| ▶CGlobalMasterEasy | |
| CGlobalMasterMisc | |
| CGlobalMasterFreeEnergy | |
| CGlobalMasterIMD | |
| CGlobalMasterSMD | |
| CGlobalMasterSymmetry | |
| CGlobalMasterTcl | |
| CGlobalMasterTest | |
| CGlobalMasterTMD | |
| CGlobalMasterServer | |
| Cgo_pair | |
| Cgo_val | |
| ▶CGridforceFullBaseGrid | |
| CGridforceFullMainGrid | |
| CGridforceFullSubGrid | |
| ▶CGridforceGrid | |
| CGridforceFullMainGrid | |
| CGridforceLiteGrid | |
| CGridforceFullBaseGrid::GridIndices | |
| CGroGaussPair | |
| CGroLJPair | |
| CgromacsPair | |
| CGromacsPairElem | |
| CGromacsPairValue | |
| CGromacsTopFile | |
| ▶CGroup | |
| CReductionMgr | |
| CGroupRestraintList | |
| CGroupRestraintParam | |
| CHashPool< T > | |
| CHashPoolAdaptorT< T > | |
| CHashReal | |
| CheapIterator | |
| CheapRecord | |
| CHomePatchElem | |
| ▶CHybridBaseLB | |
| CNamdHybridLB | |
| CHydrogenGroupID | |
| CidIndxStr | |
| Cijpair | |
| Cijpair_sortop_bit_reversed | |
| CIMDEnergies | |
| CIMDheader | |
| CIMDOutput | |
| Cimproper | |
| Cimproper_params | |
| CImproperElem | |
| CImproperValue | |
| Cindexed_nbthole_pair | |
| Cindexed_table_pair | |
| Cindexed_vdw_pair | |
| Cindexed_vdw_pair_accel | |
| ▶Cmsm::IndexRange | |
| Cmsm::Grid< C1Matrix > | |
| Cmsm::Grid< C1Vector > | |
| Cmsm::Grid< Float > | |
| Cmsm::Grid< msm::BlockDiagram > | |
| Cmsm::Grid< Mtype > | |
| Cmsm::Grid< Vtype > | |
| Cmsm::Grid< T > | |
| Cmsm::GridFixed< T, N > | |
| ▶CInfoRecord | |
| CcomputeInfo | |
| CpatchInfo | |
| CprocessorInfo | |
| CInt2 | |
| CInt3 | |
| COutputAtomRecord::integerVals | |
| CInterpParams_t | |
| Cintpair | |
| ▶CIRSet | |
| CLargeIRSet | |
| CisEmpty | |
| CisWater< doFixed > | |
| CIterator | |
| Cmsm::Ivec | |
| CLattice | |
| CLCPOAtom | |
| CLCPONeighborList | |
| CLincsSolver | |
| ClistNode | |
| CLjPmeCompute | |
| CLjPmeGrid | |
| CLjPmeKSpace | |
| CLjPmeMgr | |
| CLjPmeRealSpace | |
| CLjPmeSerialAtom | |
| CLJTable | |
| CLocalID | |
| ClocalIDResult | Helper struct to store the result of query local ID from global ID |
| CLocalPmeInfo | |
| CComputeLonepairsCUDA::LonepairBisector | |
| CComputeLonepairsCUDA::LonepairColinear | |
| CComputeLonepairsCUDA::LonepairRelative | |
| Clphost | |
| CLSSDataStr | |
| ClssDistSort | |
| CLSSSubsDat | |
| Cmsm::Map | |
| CMatrix4 | 4x4 matrix class with numerous operators, conversions, etc |
| CMatrix4Symmetry | |
| CMatrix4TMD | |
| CmaxHeap | |
| CMeasure | |
| CmeMMQMGrp | |
| Cmemusageinit | |
| CMGridforceParams | |
| CMGridforceParamsList | |
| CMigrationInfo | |
| CminHeap | |
| Cminpoint | |
| CMIStream | |
| CMoaData | |
| CMolecule | Molecule stores the structural information for the system |
| CMolInst | |
| CMOStream | |
| CMovePatch | |
| CMovingAverage | |
| CMsmBlockKernel< Vtype, Mtype > | |
| ▶CMsmBlockKernel< C1Vector, C1Matrix > | |
| CMsmC1HermiteBlock | |
| ▶CMsmBlockKernel< Float, Float > | |
| CMsmBlock | |
| CMsmGridCutoffKernel< Vtype, Mtype > | |
| ▶CMsmGridCutoffKernel< C1Vector, C1Matrix > | |
| CMsmC1HermiteGridCutoff | |
| ▶CMsmGridCutoffKernel< Float, Float > | |
| CMsmGridCutoff | |
| CMStringStrider | |
| CMultiString< NumStrings > | |
| CNamdProfileEvent | |
| CNamdState | |
| Cnbthole_pair_params | |
| Cnbthole_pair_value | |
| Cnetint | Structure used to perform byte swapping operations |
| CNL_Msm_t | |
| CNodePmeInfo | |
| CNodeReduction | |
| Cnodesort | |
| Cnonbonded | |
| CNonbondedExclValue | |
| CnotZero | |
| CObjectArena< Type > | |
| CObjectArena< char > | |
| CObjectArena< ComputeID > | |
| CObjectArena< int32 > | |
| ▶Costream | |
| Cinfostream | |
| ▶Costringstream | |
| Cdatastream | |
| Cofstream_namd | |
| COutput | |
| COutputAtomRecord | |
| COwnerBox< Owner, Data > | |
| COwnerBox< Patch, CompAtom > | |
| COwnerBox< Patch, GBReal > | |
| COwnerBox< Patch, int > | |
| COwnerBox< Patch, Real > | |
| COwnerBox< Patch, Results > | |
| CPairlists | |
| CPairTable | |
| CPAL | |
| CParameters | |
| CParseOptions | |
| ▶CPatch | |
| CHomePatch | |
| CProxyPatch | |
| Cpatch_sortop_curve_a | |
| Cpatch_sortop_curve_b | |
| Cpatch_sortop_curve_c | |
| Cmsm::PatchData | |
| CPatchDataSOA | |
| CpatchDataStrc | |
| Cmsm::PatchDiagram | |
| CPatchElem | |
| CPatchInfo | |
| CPatchLevelPmeData | |
| CPatchMap | |
| CPatchPairRecord | |
| CComputeMap::PatchRec | |
| CCudaComputeNonbonded::PatchRecord | |
| CPatchRecord | |
| Cmsm::PatchSend | |
| CRebalancer::pcpair | |
| CPDB | |
| ▶CPDBData | |
| ▶CPDBAtom | |
| CPDBAtomRecord | |
| CPDBHetatm | |
| CPDBUnknown | |
| Cpe_sortop_bit_reversed | |
| CWorkDistrib::pe_sortop_compact | |
| Cpe_sortop_coord_x | |
| Cpe_sortop_coord_y | |
| CWorkDistrib::pe_sortop_diffuse | |
| CTopoManagerWrapper::pe_sortop_topo | |
| Cper_atom_flags | |
| Cpid_sortop_reverse_priority | |
| CPluginIOMgr | |
| ▶CPmeAtomStorage | |
| CCpuPmeAtomStorage | |
| CCudaPmeAtomStorage | |
| CPmeGrid | |
| CPmeKSpace | |
| ▶CPmeKSpaceCompute | |
| CCudaPmeKSpaceCompute | |
| CPmeParticle | |
| CPmePencilInitMsgData | |
| CPmeRealSpace | |
| ▶CPmeRealSpaceCompute | |
| CCudaPmeRealSpaceCompute | |
| ▶CPmeTranspose | |
| CCudaPmeTranspose | |
| CpntChrgDist | |
| CPointer | |
| Cposition_index | |
| CPressureProfileReduction | |
| Cmsm::PriorityQueue< T > | |
| CProxyElem | |
| CProxyListInfo | |
| CProxyTree | |
| CproxyTreeNode | |
| CProxyUsage | |
| CProxyUsageKey | |
| CQMAtomData | |
| CQMForce | |
| CqmSolvData | |
| CRandom | |
| CHomePatch::RattleList | |
| CRattleParam | |
| ▶CRebalancer | |
| CAlg7 | |
| CAlgNbor | |
| CAlgRecBisection | |
| CRefineOnly | |
| ▶CRefineTorusLB | |
| CTorusLB | |
| CRecBisection | |
| CReductionSet | |
| CReductionSetData | |
| CReductionValue | |
| CrefSelStr | |
| CReplicaDcdAckMsg | |
| CReplicaDcdDataMsg | |
| CReplicaDcdInitMsg | |
| CRequireReduction | |
| CResidueLookupElem | |
| ▶CResizeArray< Elem > | |
| ▶CSortableResizeArray< Elem > | |
| ▶CSortedArray< Elem > | |
| CUniqueSortedArray< Elem > | |
| CResizeArray< __sort_entry > | |
| CResizeArray< AngleElem > | |
| CResizeArray< AnisoElem > | |
| CResizeArray< AtomID > | |
| CResizeArray< BigReal > | |
| CResizeArray< bond > | |
| CResizeArray< BondElem > | |
| CResizeArray< char *> | |
| CResizeArray< char > | |
| CResizeArray< ClusterCoorMsg * > | |
| CResizeArray< ClusterSizeMsg * > | |
| CResizeArray< CollectionMaster::CollectVectorInstance *> | |
| CResizeArray< CollectionMaster::CollectVectorInstanceDcdSelection *> | |
| CResizeArray< CollectionMgr::CollectVectorInstance *> | |
| CResizeArray< CollectProxyVectorInstance *> | |
| CResizeArray< CompAtom > | |
| CResizeArray< CompAtomExt > | |
| ▶CResizeArray< Compute * > | |
| ▶CSortableResizeArray< Compute * > | |
| CSortedArray< Compute * > | |
| CResizeArray< ComputeGlobalResultsMsg *> | |
| CResizeArray< ComputeID *> | |
| CResizeArray< ComputeMap::ComputeData > | |
| CResizeArray< ComputePme *> | |
| ▶CResizeArray< ComputeQMPntChrg > | |
| ▶CSortableResizeArray< ComputeQMPntChrg > | |
| CSortedArray< ComputeQMPntChrg > | |
| CResizeArray< const char *> | |
| CResizeArray< const GenericAngle *> | |
| CResizeArray< const GenericAtom *> | |
| CResizeArray< const GenericBond *> | |
| CResizeArray< const GenericDihedral *> | |
| CResizeArray< const MolInst *> | |
| CResizeArray< const Real *> | |
| CResizeArray< CrosstermElem > | |
| CResizeArray< CudaAtom > | |
| CResizeArray< DihedralElem > | |
| CResizeArray< ExclElem > | |
| CResizeArray< float > | |
| CResizeArray< FloatVector > | |
| CResizeArray< Force > | |
| CResizeArray< FullAtom > | |
| CResizeArray< GBReal > | |
| CResizeArray< GenericMol *> | |
| CResizeArray< GlobalMaster *> | |
| CResizeArray< GroGaussPair > | |
| CResizeArray< GroLJPair > | |
| CResizeArray< GromacsPairElem > | |
| ▶CResizeArray< HomePatchElem > | |
| ▶CSortableResizeArray< HomePatchElem > | |
| CSortedArray< HomePatchElem > | |
| ▶CResizeArray< HydrogenGroupID > | |
| CSortableResizeArray< HydrogenGroupID > | |
| ▶CResizeArray< idIndxStr > | |
| ▶CSortableResizeArray< idIndxStr > | |
| CSortedArray< idIndxStr > | |
| CResizeArray< ImproperElem > | |
| CResizeArray< InputAtom > | |
| ▶CResizeArray< int > | |
| ▶CSortableResizeArray< int > | |
| CSortedArray< int > | |
| CResizeArray< int32 *> | |
| CResizeArray< intpair > | |
| CResizeArray< Lattice > | |
| CResizeArray< LSSDataMap > | |
| CResizeArray< LSSRefMap > | |
| ▶CResizeArray< LSSSubsDat > | |
| ▶CSortableResizeArray< LSSSubsDat > | |
| CSortedArray< LSSSubsDat > | |
| ▶CResizeArray< meMMQMGrp > | |
| ▶CSortableResizeArray< meMMQMGrp > | |
| CSortedArray< meMMQMGrp > | |
| CResizeArray< MigrationElem > | |
| ▶CResizeArray< MovePatch > | |
| ▶CSortableResizeArray< MovePatch > | |
| CSortedArray< MovePatch > | |
| CResizeArray< NodeID > | |
| ▶CResizeArray< PatchElem > | |
| ▶CSortableResizeArray< PatchElem > | |
| ▶CSortedArray< PatchElem > | |
| CUniqueSortedArray< PatchElem > | |
| CResizeArray< PatchID > | |
| CResizeArray< plint > | |
| CResizeArray< PmeGridMsg *> | |
| CResizeArray< PmeParticle > | |
| CResizeArray< Position > | |
| CResizeArray< Real > | |
| CResizeArray< ResizeArray > | |
| CResizeArray< SortedArray< int > > | |
| CResizeArray< T > | |
| CResizeArray< TholeElem > | |
| CResizeArray< Type *> | |
| CResizeArray< unsigned char > | |
| CResizeArray< Vector > | |
| CResizeArray< void *> | |
| CResizeArrayIter< T > | |
| CResizeArrayIter< PatchElem > | |
| CResizeArrayPrimIter< T > | |
| CResizeArrayRaw< Elem > | |
| CResizeArrayRaw< __sort_entry > | |
| CResizeArrayRaw< AngleElem > | |
| CResizeArrayRaw< AnisoElem > | |
| CResizeArrayRaw< AtomID > | |
| CResizeArrayRaw< BigReal > | |
| CResizeArrayRaw< bond > | |
| CResizeArrayRaw< BondElem > | |
| CResizeArrayRaw< char *> | |
| CResizeArrayRaw< char > | |
| CResizeArrayRaw< ClusterCoorMsg *> | |
| CResizeArrayRaw< ClusterSizeMsg *> | |
| CResizeArrayRaw< CollectionMaster::CollectVectorInstance *> | |
| CResizeArrayRaw< CollectionMaster::CollectVectorInstanceDcdSelection *> | |
| CResizeArrayRaw< CollectionMgr::CollectVectorInstance *> | |
| CResizeArrayRaw< CollectProxyVectorInstance *> | |
| CResizeArrayRaw< CompAtom > | |
| CResizeArrayRaw< CompAtomExt > | |
| CResizeArrayRaw< Compute *> | |
| CResizeArrayRaw< ComputeGlobalResultsMsg *> | |
| CResizeArrayRaw< ComputeID *> | |
| CResizeArrayRaw< ComputeMap::ComputeData > | |
| CResizeArrayRaw< ComputePme *> | |
| CResizeArrayRaw< ComputeQMPntChrg > | |
| CResizeArrayRaw< const char *> | |
| CResizeArrayRaw< const GenericAngle *> | |
| CResizeArrayRaw< const GenericAtom *> | |
| CResizeArrayRaw< const GenericBond *> | |
| CResizeArrayRaw< const GenericDihedral *> | |
| CResizeArrayRaw< const MolInst *> | |
| CResizeArrayRaw< const Real *> | |
| CResizeArrayRaw< CrosstermElem > | |
| CResizeArrayRaw< CudaAtom > | |
| CResizeArrayRaw< DihedralElem > | |
| CResizeArrayRaw< ExclElem > | |
| CResizeArrayRaw< float > | |
| CResizeArrayRaw< FloatVector > | |
| CResizeArrayRaw< Force > | |
| CResizeArrayRaw< FullAtom > | |
| CResizeArrayRaw< GBReal > | |
| CResizeArrayRaw< GenericMol *> | |
| CResizeArrayRaw< GlobalMaster *> | |
| CResizeArrayRaw< GroGaussPair > | |
| CResizeArrayRaw< GroLJPair > | |
| CResizeArrayRaw< GromacsPairElem > | |
| CResizeArrayRaw< HomePatchElem > | |
| CResizeArrayRaw< HydrogenGroupID > | |
| CResizeArrayRaw< idIndxStr > | |
| CResizeArrayRaw< ImproperElem > | |
| CResizeArrayRaw< InputAtom > | |
| CResizeArrayRaw< int > | |
| CResizeArrayRaw< int32 *> | |
| CResizeArrayRaw< intpair > | |
| CResizeArrayRaw< Lattice > | |
| CResizeArrayRaw< LSSDataMap > | |
| CResizeArrayRaw< LSSRefMap > | |
| CResizeArrayRaw< LSSSubsDat > | |
| CResizeArrayRaw< meMMQMGrp > | |
| CResizeArrayRaw< MigrationElem > | |
| CResizeArrayRaw< MovePatch > | |
| CResizeArrayRaw< NodeID > | |
| CResizeArrayRaw< PatchElem > | |
| CResizeArrayRaw< PatchID > | |
| CResizeArrayRaw< plint > | |
| CResizeArrayRaw< PmeGridMsg *> | |
| CResizeArrayRaw< PmeParticle > | |
| CResizeArrayRaw< Position > | |
| CResizeArrayRaw< Real > | |
| CResizeArrayRaw< ResizeArray > | |
| CResizeArrayRaw< SortedArray< int > > | |
| CResizeArrayRaw< T > | |
| CResizeArrayRaw< TholeElem > | |
| CResizeArrayRaw< Type *> | |
| CResizeArrayRaw< unsigned char > | |
| CResizeArrayRaw< Vector > | |
| CResizeArrayRaw< void *> | |
| CResults | |
| CRunningAverage | |
| CScriptTcl | |
| Cseg_resid | |
| CSequencer | |
| CSettleParameters | |
| COutputAtomRecord::shortVals | |
| CSimParameters | |
| CScriptTcl::SimpleBroadcastObjectWrapper | |
| ▶Csortop_base | |
| Csortop_x | |
| Csortop_y | |
| Csortop_z | |
| Csortop_bit_reversed | |
| Csortop_SOA | |
| CsparseMatrix | |
| CStreamMessage | |
| ▶Cstringbuf | |
| CCkPrintf_stringbuf | |
| CStringList | |
| CSubmitReduction | |
| Ctable_pair_params | |
| CLJTable::TableEntry | |
| CTaggedMsg | |
| CTensor | |
| Cthole | |
| CTholeElem | |
| CTileExcl | |
| CTileList | |
| CTileListStat | |
| CTileListVirialEnergy | |
| CTopoManagerWrapper | |
| CTransform | |
| CTransposeBatch< T > | |
| CTransposeBatch< float2 > | |
| CTupleCounts | |
| CTupleData | |
| CTupleDataStage | |
| CTupleDataStagePeer | |
| CTupleIntArrays | |
| CTupleIntArraysContiguous | |
| CTupleIntArraysPeer | |
| CTuplePatchElem | |
| CTupleSignature | |
| CTupleSizes | |
| CTupleStrider< NumStrings > | |
| CTupleString< NumStrings > | |
| CTupleString< 4 > | |
| CTupleStringHash< NumStrings > | |
| CTwoLevelParam< NumStrings, ParamValue > | |
| CTwoLevelParam< 1, vdw_val > | |
| CTwoLevelParam< 2, BondValue > | |
| CTwoLevelParam< 3, AngleValue > | |
| CTwoLevelParam< 4, DihedralValue > | |
| CTwoLevelParam< 4, ImproperValue > | |
| CTwoLevelParam< 8, CrosstermValue > | |
| CUniqueSet< Elem > | |
| CUniqueSet< BOID > | |
| CUniqueSet< BroadcastClientElem > | |
| CUniqueSet< ClusterCoorElem > | |
| CUniqueSet< ClusterElem > | |
| CUniqueSet< Exclusion > | |
| CUniqueSet< ProxyElem > | |
| CUniqueSet< T > | |
| CUniqueSet< TaggedMsg > | |
| CUniqueSet< TuplePatchElem > | |
| CUniqueSetIter< T > | |
| CUniqueSetRaw< Elem > | |
| CUniqueSetRaw< BOID > | |
| CUniqueSetRaw< BroadcastClientElem > | |
| CUniqueSetRaw< ClusterCoorElem > | |
| CUniqueSetRaw< ClusterElem > | |
| CUniqueSetRaw< Exclusion > | |
| CUniqueSetRaw< ProxyElem > | |
| CUniqueSetRaw< T > | |
| CUniqueSetRaw< TaggedMsg > | |
| CUniqueSetRaw< TuplePatchElem > | |
| CvalidRattle | |
| Cvdw_pair_params | |
| Cvdw_params | |
| Cvdw_val | |
| CVDWTable | |
| Cvect | |
| ▶CVector | |
| CAlignVector | |
| CzVector | |
| CVirialEnergy | |
| Cvmdforce | |
| Cwkf_timer | |
| Cwkfmsgtimer | |
| CWorkIndex | |
| CXXH32_canonical_t | |
| CXXH64_canonical_t | |
| ▶Cstring | |
| CHashString | |
| ▶CT | |
| CPmePencil< T > | |
