C__sort_entry | |
CAGroup | |
CALambdaControl | |
CALambdaManager | |
CAlchData | Alchemical datastructure that holds the lambda-relevant paramenters for FEP/TI |
CAmbertoppar | |
CAmberParm7Reader::Ambertoppar | |
Cangle | |
Cangle_params | |
CAngleElem | |
CAngleTable | |
CAngleValue | |
Caniso | |
CAnisoElem | |
▶CARestraint | |
▶CADiheRestraint | |
CABoundDiheRestraint | |
CAFixedDiheRestraint | |
CAForcingDiheRestraint | |
▶CADistRestraint | |
CABoundDistRestraint | |
CAFixedDistRestraint | |
CAForcingDistRestraint | |
▶CAnAngleRestraint | |
CABoundAngleRestraint | |
CAFixedAngleRestraint | |
CAForcingAngleRestraint | |
▶CAPosRestraint | |
CABoundPosRestraint | |
CAFixedPosRestraint | |
CAForcingPosRestraint | |
CARestraintManager | |
Cmsm::Array< T > | |
▶CArray< Elem, Size > | |
CMathArray< Elem, Size > | |
Cmsm::Array< AtomCoord > | |
Cmsm::Array< C1Matrix > | |
Cmsm::Array< C1Vector > | |
Cmsm::Array< CProxy_MsmBlock > | |
Cmsm::Array< CProxy_MsmC1HermiteBlock > | |
▶CArray< double, Size > | |
CMathArray< double, 7 > | |
Cmsm::Array< Float > | |
Cmsm::Array< Force > | |
Cmsm::Array< int > | |
Cmsm::Array< msm::BlockDiagram > | |
Cmsm::Array< msm::BlockSend > | |
Cmsm::Array< msm::FoldFactor > | |
Cmsm::Array< msm::Grid< C1Matrix > > | |
Cmsm::Array< msm::Grid< Float > > | |
Cmsm::Array< msm::Grid< msm::BlockDiagram > > | |
Cmsm::Array< msm::IndexRange > | |
Cmsm::Array< msm::PatchDiagram > | |
Cmsm::Array< msm::PatchSend > | |
Cmsm::Array< Mtype > | |
CArray< PatchData * > | |
Cmsm::Array< Vtype > | |
Cassert_ProxyResultVarsizeMsg | |
Catom_constants | |
Catom_name_info | |
Cmsm::AtomCoord | |
CAtomCstInfo | |
CatomData | |
CatomID_less | |
CAtomMap | |
CAtomMapper | |
CAtomNameIdx | |
CAtomSigInfo | |
CAtomSignature | |
CAtomTable | |
CAVector | |
CBackEnd | |
CBasicAtomInfo | |
Cmsm::BlockDiagram | |
Cmsm::BlockIndex | |
Cmsm::BlockSend | |
CBOCgroup | |
CBOID | |
Cbond | |
Cbond_params | |
CComputeBondedCUDAKernel::BondedVirial< T > | |
CBondElem | |
CBondTable | |
CBondValue | |
CBoundingBox | |
CBox< Owner, Data > | |
CBox< Patch, CompAtom > | |
CBox< Patch, GBReal > | |
CBox< Patch, int > | |
CBox< Patch, Real > | |
CBox< Patch, Results > | |
▶CBroadcastClient | |
CSimpleBroadcastObject< T > | |
CSimpleBroadcastObject< BigReal > | |
CSimpleBroadcastObject< int > | |
CSimpleBroadcastObject< Tensor > | |
CSimpleBroadcastObject< Vector > | |
CBroadcastClientElem | |
CC1Matrix | |
CC1Vector | |
▶CCBase_BroadcastMgr | |
CBroadcastMgr | |
▶CCBase_CollectionMgr | |
CCollectionMgr | |
▶CCBase_ComputeCUDAMgr | |
CComputeCUDAMgr | |
▶CCBase_ComputeExtMgr | |
CComputeExtMgr | |
▶CCBase_ComputeFmmSerialMgr | |
CComputeFmmSerialMgr | |
▶CCBase_ComputeGBISserMgr | |
CComputeGBISserMgr | |
▶CCBase_ComputeLjPmeSerialMgr | |
CComputeLjPmeSerialMgr | |
▶CCBase_ComputeMgr | |
CComputeMgr | |
▶CCBase_ComputeMsmMgr | |
CComputeMsmMgr | |
▶CCBase_ComputeMsmSerialMgr | |
CComputeMsmSerialMgr | |
▶CCBase_ComputePmeCUDADevice | |
CComputePmeCUDADevice | |
▶CCBase_ComputePmeCUDAMgr | |
CComputePmeCUDAMgr | |
▶CCBase_ComputePmeMgr | |
CComputePmeMgr | |
▶CCBase_ComputeQMMgr | |
CComputeQMMgr | |
▶CCBase_CudaPmePencilX | |
CCudaPmePencilX | |
▶CCBase_CudaPmePencilXY | |
CCudaPmePencilXY | |
▶CCBase_CudaPmePencilXYZ | |
CCudaPmePencilXYZ | |
▶CCBase_CudaPmePencilY | |
CCudaPmePencilY | |
▶CCBase_CudaPmePencilZ | |
CCudaPmePencilZ | |
▶CCBase_DataExchanger | |
CDataExchanger | |
▶CCBase_LdbCoordinator | |
CLdbCoordinator | |
▶CCBase_MsmBlock | |
CMsmBlock | |
▶CCBase_MsmC1HermiteBlock | |
CMsmC1HermiteBlock | |
▶CCBase_MsmC1HermiteGridCutoff | |
CMsmC1HermiteGridCutoff | |
▶CCBase_MsmGridCutoff | |
CMsmGridCutoff | |
▶CCBase_MsmProfiler | |
CMsmProfiler | |
▶CCBase_MsmTimer | |
CMsmTimer | |
▶CCBase_Node | |
CNode | |
▶CCBase_NodePmeMgr | |
CNodePmeMgr | |
▶CCBase_NodeProxyMgr | |
CNodeProxyMgr | |
▶CCBase_ParallelIOMgr | |
CParallelIOMgr | |
▶CCBase_PatchData | |
CPatchData | |
▶CCBase_PatchMgr | |
CPatchMgr | |
▶CCBase_PmeAtomFiler | |
CPmeAtomFiler | |
▶CCBase_PmePencilMap | |
CPmePencilMap | |
▶CCBase_PmePencilX | |
CPmePencilX | |
▶CCBase_PmePencilXMap | |
CPmePencilXMap | |
▶CCBase_PmePencilXY | |
CPmePencilXY | |
▶CCBase_PmePencilXYMap | |
CPmePencilXYMap | |
▶CCBase_PmePencilXYZ | |
CPmePencilXYZ | |
▶CCBase_PmePencilXYZMap | |
CPmePencilXYZMap | |
▶CCBase_PmePencilY | |
CPmePencilY | |
▶CCBase_PmePencilZ | |
CPmePencilZ | |
▶CCBase_PmeXPencil | |
▶CPmePencil< CBase_PmeXPencil > | |
CPmeXPencil | |
▶CCBase_PmeYPencil | |
▶CPmePencil< CBase_PmeYPencil > | |
CPmeYPencil | |
▶CCBase_PmeZPencil | |
▶CPmePencil< CBase_PmeZPencil > | |
CPmeZPencil | |
▶CCBase_ProxyMgr | |
CProxyMgr | |
▶CCBase_Sync | |
CSync | |
▶CCBase_WorkDistrib | |
CWorkDistrib | |
▶CCentralLB | |
CNamdCentLB | |
CNamdDummyLB | |
▶CChare | |
CCollectionMaster | |
Cmain | |
CController::checkpoint | |
CHomePatch::checkpoint_t | |
CCheckStep | |
▶CCkArrayMap | |
CMsmBlockMap | |
CMsmGridCutoffMap | |
▶CCkMcastBaseMsg | |
CGridMsg | |
CMsmC1HermiteGridCutoffSetupMsg | |
CMsmGridCutoffSetupMsg | |
CClusterCoorElem | |
CClusterElem | |
▶CCMessage_AtomsCntPerPatchMsg | |
CAtomsCntPerPatchMsg | |
▶CCMessage_BroadcastMsg | |
CBroadcastMsg | |
▶CCMessage_CheckpointAtomsMsg | |
CCheckpointAtomsMsg | |
▶CCMessage_CheckpointAtomsReqMsg | |
CCheckpointAtomsReqMsg | |
▶CCMessage_CheckpointMsg | |
CCheckpointMsg | |
▶CCMessage_ClusterCoorMsg | |
CClusterCoorMsg | |
▶CCMessage_ClusterSizeMsg | |
CClusterSizeMsg | |
▶CCMessage_CollectLoadsMsg | |
CCollectLoadsMsg | |
▶CCMessage_CollectVectorMsg | |
CCollectVectorMsg | |
▶CCMessage_CollectVectorVarMsg | |
CCollectVectorVarMsg | |
▶CCMessage_ComputeConsForceMsg | |
CComputeConsForceMsg | |
▶CCMessage_ComputeDPMEDataMsg | |
CComputeDPMEDataMsg | |
▶CCMessage_ComputeDPMEResultsMsg | |
CComputeDPMEResultsMsg | |
▶CCMessage_ComputeEwaldMsg | |
CComputeEwaldMsg | |
▶CCMessage_ComputeGlobalDataMsg | |
CComputeGlobalDataMsg | |
▶CCMessage_ComputeGlobalResultsMsg | |
CComputeGlobalResultsMsg | |
▶CCMessage_ComputeMapChangeMsg | |
CComputeMapChangeMsg | |
▶CCMessage_CudaComputeNonbondedMsg | |
CCudaComputeNonbondedMsg | |
▶CCMessage_CudaPmeXInitMsg | |
CCudaPmeXInitMsg | |
▶CCMessage_CudaPmeXYInitMsg | |
CCudaPmeXYInitMsg | |
▶CCMessage_CudaPmeXYZInitMsg | |
CCudaPmeXYZInitMsg | |
▶CCMessage_DataStreamMsg | |
CDataStreamMsg | |
▶CCMessage_DeviceDataMsg | |
CDeviceDataMsg | |
▶CCMessage_ExchangeAtomsMsg | |
CExchangeAtomsMsg | |
▶CCMessage_ExchangeAtomsReqMsg | |
CExchangeAtomsReqMsg | |
▶CCMessage_ExtCoordMsg | |
CExtCoordMsg | |
▶CCMessage_ExtForceMsg | |
CExtForceMsg | |
▶CCMessage_FinishWorkMsg | |
CFinishWorkMsg | |
▶CCMessage_FmmSerialCoordMsg | |
CFmmSerialCoordMsg | |
▶CCMessage_FmmSerialForceMsg | |
CFmmSerialForceMsg | |
▶CCMessage_GBISCoordMsg | |
CGBISCoordMsg | |
▶CCMessage_GBISForceMsg | |
CGBISForceMsg | |
▶CCMessage_GMWakeMsg | |
CGMWakeMsg | |
▶CCMessage_GridMsg | |
CGridMsg | |
▶CCMessage_GroupInitMsg | |
CGroupInitMsg | |
▶CCMessage_HydroBasedMsg | |
CHydroBasedMsg | |
▶CCMessage_InitDeviceMsg | |
CInitDeviceMsg | |
▶CCMessage_InitDeviceMsg2 | |
CInitDeviceMsg2 | |
▶CCMessage_LdbMigrateMsg | |
CLdbMigrateMsg | |
▶CCMessage_LjPmeSerialCoordMsg | |
CLjPmeSerialCoordMsg | |
▶CCMessage_LjPmeSerialForceMsg | |
CLjPmeSerialForceMsg | |
▶CCMessage_LocalLBInfoMsg | |
CLocalLBInfoMsg | |
▶CCMessage_LocalWorkMsg | |
CLocalWorkMsg | |
▶CCMessage_MigrateAtomsCombinedMsg | |
CMigrateAtomsCombinedMsg | |
▶CCMessage_MigrateAtomsMsg | |
CMigrateAtomsMsg | |
▶CCMessage_MolInfoMsg | |
CMolInfoMsg | |
▶CCMessage_MoveAllByMsg | |
CMoveAllByMsg | |
▶CCMessage_MoveAtomMsg | |
CMoveAtomMsg | |
▶CCMessage_MoveInputAtomsMsg | |
CMoveInputAtomsMsg | |
▶CCMessage_MovePatchAtomsMsg | |
CMovePatchAtomsMsg | |
▶CCMessage_MovePatchesMsg | |
CMovePatchesMsg | |
▶CCMessage_MsmBlockProxyMsg | |
CMsmBlockProxyMsg | |
▶CCMessage_MsmC1HermiteBlockProxyMsg | |
CMsmC1HermiteBlockProxyMsg | |
▶CCMessage_MsmC1HermiteGridCutoffProxyMsg | |
CMsmC1HermiteGridCutoffProxyMsg | |
▶CCMessage_MsmC1HermiteGridCutoffSetupMsg | |
CMsmC1HermiteGridCutoffSetupMsg | |
▶CCMessage_MsmGridCutoffInitMsg | |
CMsmGridCutoffInitMsg | |
▶CCMessage_MsmGridCutoffProxyMsg | |
CMsmGridCutoffProxyMsg | |
▶CCMessage_MsmGridCutoffSetupMsg | |
CMsmGridCutoffSetupMsg | |
▶CCMessage_MsmInitMsg | |
CMsmInitMsg | |
▶CCMessage_MsmSerialCoordMsg | |
CMsmSerialCoordMsg | |
▶CCMessage_MsmSerialForceMsg | |
CMsmSerialForceMsg | |
▶CCMessage_NumDevicesMsg | |
CNumDevicesMsg | |
▶CCMessage_PatchMapMsg | |
CPatchMapMsg | |
▶CCMessage_PatchProxyListMsg | |
CPatchProxyListMsg | |
▶CCMessage_PmeAckMsg | |
CPmeAckMsg | |
▶CCMessage_PmeAtomMsg | |
CPmeAtomMsg | |
▶CCMessage_PmeAtomPencilMsg | |
CPmeAtomPencilMsg | |
▶CCMessage_PmeBlockMsg | |
CPmeBlockMsg | |
▶CCMessage_PmeDoneMsg | |
CPmeDoneMsg | |
▶CCMessage_PmeEvirMsg | |
CPmeEvirMsg | |
▶CCMessage_PmeForceMsg | |
CPmeForceMsg | |
▶CCMessage_PmeForcePencilMsg | |
CPmeForcePencilMsg | |
▶CCMessage_PmeGridMsg | |
CPmeGridMsg | |
▶CCMessage_PmeLaunchMsg | |
CPmeLaunchMsg | |
▶CCMessage_PmePencilInitMsg | |
CPmePencilInitMsg | |
▶CCMessage_PmeRunMsg | |
CPmeRunMsg | |
▶CCMessage_PmeSharedTransMsg | |
CPmeSharedTransMsg | |
▶CCMessage_PmeSharedUntransMsg | |
CPmeSharedUntransMsg | |
▶CCMessage_PmeStartMsg | |
CPmeStartMsg | |
▶CCMessage_PmeTransMsg | |
CPmeTransMsg | |
▶CCMessage_PmeUntransMsg | |
CPmeUntransMsg | |
▶CCMessage_ProxyCombinedResultMsg | |
CProxyCombinedResultMsg | |
▶CCMessage_ProxyCombinedResultRawMsg | |
CProxyCombinedResultRawMsg | |
▶CCMessage_ProxyDataMsg | |
CProxyDataMsg | |
▶CCMessage_ProxyGBISP1ResultMsg | |
CProxyGBISP1ResultMsg | |
▶CCMessage_ProxyGBISP2DataMsg | |
CProxyGBISP2DataMsg | |
▶CCMessage_ProxyGBISP2ResultMsg | |
CProxyGBISP2ResultMsg | |
▶CCMessage_ProxyGBISP3DataMsg | |
CProxyGBISP3DataMsg | |
▶CCMessage_ProxyNodeAwareSpanningTreeMsg | |
CProxyNodeAwareSpanningTreeMsg | |
▶CCMessage_ProxyResultMsg | |
CProxyResultMsg | |
▶CCMessage_ProxyResultVarsizeMsg | |
CProxyResultVarsizeMsg | |
▶CCMessage_ProxySpanningTreeMsg | |
CProxySpanningTreeMsg | |
▶CCMessage_QMCoordMsg | |
CQMCoordMsg | |
▶CCMessage_QMForceMsg | |
CQMForceMsg | |
▶CCMessage_QMGrpCalcMsg | |
CQMGrpCalcMsg | |
▶CCMessage_QMGrpResMsg | |
CQMGrpResMsg | |
▶CCMessage_QMPntChrgMsg | |
CQMPntChrgMsg | |
▶CCMessage_RecvDeviceMsg | |
CRecvDeviceMsg | |
▶CCMessage_ReductionRegisterMsg | |
CReductionRegisterMsg | |
▶CCMessage_ReductionSubmitMsg | |
CReductionSubmitMsg | |
▶CCMessage_RegisterPatchMsg | |
CRegisterPatchMsg | |
▶CCMessage_RegisterProxyMsg | |
CRegisterProxyMsg | |
▶CCMessage_ScriptParamMsg | |
CScriptParamMsg | |
▶CCMessage_SetLatticeMsg | |
CSetLatticeMsg | |
▶CCMessage_SlaveInitMsg | |
CSlaveInitMsg | |
▶CCMessage_SplitComputesMsg | |
CSplitComputesMsg | |
▶CCMessage_UnregisterProxyMsg | |
CUnregisterProxyMsg | |
CCollectProxyVectorInstance | |
CCollectProxyVectorSequence | |
▶CCollectionMaster::CollectVectorInstance | |
CCollectionMaster::CollectVectorInstanceDcdSelection | |
CCollectionMgr::CollectVectorInstance | |
CCollectionMgr::CollectVectorSequence | |
▶CCollectionMaster::CollectVectorSequence | |
CCollectionMaster::CollectVectorSequenceDcdSelection | |
▶Ccolvarproxy | |
Ccolvarproxy_namd | Communication between colvars and NAMD (implementation of colvarproxy) |
CCommunicate | |
▶CCompAtom | |
▶CFullAtom | |
CInputAtom | |
▶CCompAtomExt | |
CFullAtom | |
CCompAtomExtCopy | |
▶CCompute | |
▶CComputeHomePatch | |
CComputeConsForce | |
CComputeConsTorque | |
CComputeCylindricalBC | |
CComputeEField | |
CComputeGridForce | |
CComputeRestraints | |
CComputeSphericalBC | |
CComputeStir | |
▶CComputeHomePatches | |
CComputeEwald | |
CComputeExt | |
CComputeFmmSerial | |
CComputeFullDirect | |
CComputeGBISser | |
CComputeGlobal | |
CComputeLjPmeSerial | |
CComputeMoa | |
CComputeMsm | |
CComputeMsmSerial | |
CComputeQM | |
CComputeTclBC | |
▶CComputeHomeTuples< T, S, P > | |
CComputeSelfTuples< T, S, P > | |
▶CComputeHomeTuples< AngleElem, Angle, AngleValue > | |
CComputeAngles | |
▶CComputeSelfTuples< AngleElem, Angle, AngleValue > | |
CComputeSelfAngles | |
▶CComputeHomeTuples< AnisoElem, Aniso, AnisoValue > | |
CComputeAniso | |
▶CComputeSelfTuples< AnisoElem, Aniso, AnisoValue > | |
CComputeSelfAniso | |
▶CComputeHomeTuples< BondElem, Bond, BondValue > | |
CComputeBonds | |
▶CComputeSelfTuples< BondElem, Bond, BondValue > | |
CComputeSelfBonds | |
▶CComputeHomeTuples< CrosstermElem, Crossterm, CrosstermValue > | |
CComputeCrossterms | |
▶CComputeSelfTuples< CrosstermElem, Crossterm, CrosstermValue > | |
CComputeSelfCrossterms | |
▶CComputeHomeTuples< DihedralElem, Dihedral, DihedralValue > | |
CComputeDihedrals | |
▶CComputeSelfTuples< DihedralElem, Dihedral, DihedralValue > | |
CComputeSelfDihedrals | |
▶CComputeHomeTuples< ExclElem, Exclusion, int > | |
CComputeExcls | |
▶CComputeSelfTuples< ExclElem, Exclusion, int > | |
CComputeSelfExcls | |
▶CComputeHomeTuples< GromacsPairElem, GromacsPair, GromacsPairValue > | |
CComputeGromacsPair | |
▶CComputeSelfTuples< GromacsPairElem, GromacsPair, GromacsPairValue > | |
CComputeSelfGromacsPair | |
▶CComputeHomeTuples< ImproperElem, Improper, ImproperValue > | |
CComputeImpropers | |
▶CComputeSelfTuples< ImproperElem, Improper, ImproperValue > | |
CComputeSelfImpropers | |
▶CComputeHomeTuples< TholeElem, Thole, TholeValue > | |
▶CComputeSelfTuples< TholeElem, Thole, TholeValue > | |
CComputeSelfThole | |
CComputeThole | |
CComputeLCPO | |
▶CComputePatch | |
CComputeNonbondedSelf | |
▶CComputePatchPair | |
CComputeNonbondedPair | |
CComputePme | |
CComputePmeCUDA | |
CCudaComputeNonbonded | |
CComputeBondedCUDAKernel | |
CComputeMap::ComputeData | |
CComputeExtAtom | |
CComputeFmmSerialAtom | |
CComputeGBISAtom | |
CComputeLonepairsCUDA | |
CComputeMap | |
CComputeMsmSerialAtom | |
▶CComputeNonbondedUtil | |
CComputeLCPO | |
CComputeNonbondedPair | |
CComputeNonbondedSelf | |
CCudaComputeNonbonded | |
CExclElem | |
CComputeNonbondedWorkArrays | |
▶CComputePmeUtil | |
CComputePme | |
CComputePmeMgr | |
CComputeQMAtom | |
CComputeQMPntChrg | |
CCudaComputeNonbonded::ComputeRecord | |
CConfigList | |
CConfigList::ConfigListNode | |
CConstPointer | |
CconstraintTuple | |
CControllerBroadcasts | |
▶CControllerState | |
CController | |
Ccptr_sortop_priority | |
Ccr_sortop_distance | |
Ccr_sortop_reverse_priority | |
Ccrossterm | |
Ccrossterm_params | |
CCrosstermData | |
CCrosstermElem | |
CCrosstermValue | |
CController::CthThreadWrapper | |
Ccuda_args_t | |
CComputePmeMgr::cuda_submit_charges_args | |
CCudaAlchFlags | |
CCudaAlchLambdas | |
CCudaAlchParameters | |
CCudaAngle | |
CCudaAngleStage | |
CCudaAngleValue | |
CCudaAtom | |
CCudaBond | |
CCudaBondStage | |
CCudaBondValue | |
CCudaComputeGBISKernel | |
CCudaComputeNonbondedKernel | |
CCudaComputeRecord | |
CCudaCrossterm | |
CCudaCrosstermStage | |
CCudaCrosstermValue | |
CCudaDihedral | |
CCudaDihedralStage | |
CCudaDihedralValue | |
CCudaExclusion | |
CCudaExclusionStage | |
CCudaForce | |
CCudaGlobalMasterServer | A class for copying atom information from SequencerCUDA to CudaGlobalMasterClient |
CCudaLocalRecord | |
CCudaMInfo | |
CCudaNBConstants | |
CCudaNonbondedTables | |
CCudaPatchRecord | |
CCudaPeerRecord | |
CCudaPmeOneDevice | |
CCudaRattleElem | |
CCudaRattleParam | |
CCudaStaticAssert< bool > | |
CCudaStaticAssert< true > | |
CcudaTensor | |
CCudaTileListKernel | |
CcudaVector | |
CParseOptions::DataElement | |
CDataMessage | |
Cdcd_params | |
CDeviceBuffer | |
CDeviceCUDA | |
Cdihedral | |
Cdihedral_params | |
CDihedralElem | |
CDihedralTable | |
CDihedralValue | |
▶Cdlloader::DLLoaderInterface< T > | |
Cdlloader::DLLoader< T > | |
Cdoublecomplex | |
Cdrude_constants | |
CdummyData | |
▶CeABF | |
CeABF1D | |
CeABF2D | |
▶Cenable_shared_from_this | |
CCudaGlobalMasterClient | A class for performing calculations on specific atoms selected by atom serial numbers |
CCudaPmeOneDevice::EnergyVirial | |
CEntry< Elem > | |
CEntry< BOID > | |
CEntry< BroadcastClientElem > | |
CEntry< ClusterCoorElem > | |
CEntry< ClusterElem > | |
CEntry< Exclusion > | |
CEntry< ProxyElem > | |
CEntry< T > | |
CEntry< TaggedMsg > | |
CEntry< TuplePatchElem > | |
CEntryGlob< Elem > | |
CEntryGlob< BOID > | |
CEntryGlob< BroadcastClientElem > | |
CEntryGlob< ClusterCoorElem > | |
CEntryGlob< ClusterElem > | |
CEntryGlob< Exclusion > | |
CEntryGlob< ProxyElem > | |
CEntryGlob< T > | |
CEntryGlob< TaggedMsg > | |
CEntryGlob< TuplePatchElem > | |
CEwaldParticle | |
CExclSigInfo | |
CExclusion | |
CExclusionCheck | |
CExclusionSignature | |
Cexlist_sortop | |
CExtForce | |
▶CFFTCompute | |
CCudaFFTCompute | |
CFileStack | |
CFlags | |
Cfloatcomplex | |
COutputAtomRecord::floatVals | |
CFloatVector | |
Cmsm::FoldFactor | |
CAmberParm7Reader::FortranData | |
CAmberParm7Reader::FortranFormatSpecifier | |
Cfour_body_consts | |
CGBISParamStruct | |
CGenericAngle | |
CGenericAtom | |
CGenericBond | |
CGenericDihedral | |
CGenericMol | |
▶CGlobalMaster | |
Ccolvarproxy_namd | Communication between colvars and NAMD (implementation of colvarproxy) |
▶CGlobalMasterEasy | |
CGlobalMasterMisc | |
CGlobalMasterFreeEnergy | |
CGlobalMasterIMD | |
CGlobalMasterSMD | |
CGlobalMasterSymmetry | |
CGlobalMasterTcl | |
CGlobalMasterTest | |
CGlobalMasterTMD | |
CGlobalMasterServer | |
Cgo_pair | |
Cgo_val | |
▶CGridforceFullBaseGrid | |
CGridforceFullMainGrid | |
CGridforceFullSubGrid | |
▶CGridforceGrid | |
CGridforceFullMainGrid | |
CGridforceLiteGrid | |
CGridforceFullBaseGrid::GridIndices | |
CGroGaussPair | |
CGroLJPair | |
CgromacsPair | |
CGromacsPairElem | |
CGromacsPairValue | |
CGromacsTopFile | |
▶CGroup | |
CReductionMgr | |
CGroupRestraintList | |
CGroupRestraintParam | |
CHashPool< T > | |
CHashPoolAdaptorT< T > | |
CHashReal | |
CheapIterator | |
CheapRecord | |
CHomePatchElem | |
▶CHybridBaseLB | |
CNamdHybridLB | |
CHydrogenGroupID | |
CidIndxStr | |
Cijpair | |
Cijpair_sortop_bit_reversed | |
CIMDEnergies | |
CIMDheader | |
CIMDOutput | |
Cimproper | |
Cimproper_params | |
CImproperElem | |
CImproperValue | |
Cindexed_nbthole_pair | |
Cindexed_table_pair | |
Cindexed_vdw_pair | |
Cindexed_vdw_pair_accel | |
▶Cmsm::IndexRange | |
Cmsm::Grid< C1Matrix > | |
Cmsm::Grid< C1Vector > | |
Cmsm::Grid< Float > | |
Cmsm::Grid< msm::BlockDiagram > | |
Cmsm::Grid< Mtype > | |
Cmsm::Grid< Vtype > | |
Cmsm::Grid< T > | |
Cmsm::GridFixed< T, N > | |
▶CInfoRecord | |
CcomputeInfo | |
CpatchInfo | |
CprocessorInfo | |
CInt2 | |
CInt3 | |
COutputAtomRecord::integerVals | |
CInterpParams_t | |
Cintpair | |
▶CIRSet | |
CLargeIRSet | |
CisEmpty | |
CisWater< doFixed > | |
CIterator | |
Cmsm::Ivec | |
CLattice | |
CLCPOAtom | |
CLCPONeighborList | |
CLincsSolver | |
ClistNode | |
CLjPmeCompute | |
CLjPmeGrid | |
CLjPmeKSpace | |
CLjPmeMgr | |
CLjPmeRealSpace | |
CLjPmeSerialAtom | |
CLJTable | |
CLocalID | |
ClocalIDResult | Helper struct to store the result of query local ID from global ID |
CLocalPmeInfo | |
CComputeLonepairsCUDA::LonepairBisector | |
CComputeLonepairsCUDA::LonepairColinear | |
CComputeLonepairsCUDA::LonepairRelative | |
Clphost | |
CLSSDataStr | |
ClssDistSort | |
CLSSSubsDat | |
Cmsm::Map | |
CMatrix4 | 4x4 matrix class with numerous operators, conversions, etc |
CMatrix4Symmetry | |
CMatrix4TMD | |
CmaxHeap | |
CMeasure | |
CmeMMQMGrp | |
Cmemusageinit | |
CMGridforceParams | |
CMGridforceParamsList | |
CMigrationInfo | |
CminHeap | |
Cminpoint | |
CMIStream | |
CMoaData | |
CMolecule | Molecule stores the structural information for the system |
CMolInst | |
CMOStream | |
CMovePatch | |
CMovingAverage | |
CMsmBlockKernel< Vtype, Mtype > | |
▶CMsmBlockKernel< C1Vector, C1Matrix > | |
CMsmC1HermiteBlock | |
▶CMsmBlockKernel< Float, Float > | |
CMsmBlock | |
CMsmGridCutoffKernel< Vtype, Mtype > | |
▶CMsmGridCutoffKernel< C1Vector, C1Matrix > | |
CMsmC1HermiteGridCutoff | |
▶CMsmGridCutoffKernel< Float, Float > | |
CMsmGridCutoff | |
CMStringStrider | |
CMultiString< NumStrings > | |
CNamdProfileEvent | |
CNamdState | |
Cnbthole_pair_params | |
Cnbthole_pair_value | |
Cnetint | Structure used to perform byte swapping operations |
CNL_Msm_t | |
CNodePmeInfo | |
CNodeReduction | |
Cnodesort | |
Cnonbonded | |
CNonbondedExclValue | |
CnotZero | |
CObjectArena< Type > | |
CObjectArena< char > | |
CObjectArena< ComputeID > | |
CObjectArena< int32 > | |
▶Costream | |
Cinfostream | |
▶Costringstream | |
Cdatastream | |
Cofstream_namd | |
COutput | |
COutputAtomRecord | |
COwnerBox< Owner, Data > | |
COwnerBox< Patch, CompAtom > | |
COwnerBox< Patch, GBReal > | |
COwnerBox< Patch, int > | |
COwnerBox< Patch, Real > | |
COwnerBox< Patch, Results > | |
CPairlists | |
CPairTable | |
CPAL | |
CParameters | |
CParseOptions | |
▶CPatch | |
CHomePatch | |
CProxyPatch | |
Cpatch_sortop_curve_a | |
Cpatch_sortop_curve_b | |
Cpatch_sortop_curve_c | |
Cmsm::PatchData | |
CPatchDataSOA | |
CpatchDataStrc | |
Cmsm::PatchDiagram | |
CPatchElem | |
CPatchInfo | |
CPatchLevelPmeData | |
CPatchMap | |
CPatchPairRecord | |
CComputeMap::PatchRec | |
CCudaComputeNonbonded::PatchRecord | |
CPatchRecord | |
Cmsm::PatchSend | |
CRebalancer::pcpair | |
CPDB | |
▶CPDBData | |
▶CPDBAtom | |
CPDBAtomRecord | |
CPDBHetatm | |
CPDBUnknown | |
Cpe_sortop_bit_reversed | |
CWorkDistrib::pe_sortop_compact | |
Cpe_sortop_coord_x | |
Cpe_sortop_coord_y | |
CWorkDistrib::pe_sortop_diffuse | |
CTopoManagerWrapper::pe_sortop_topo | |
Cper_atom_flags | |
Cpid_sortop_reverse_priority | |
CPluginIOMgr | |
▶CPmeAtomStorage | |
CCpuPmeAtomStorage | |
CCudaPmeAtomStorage | |
CPmeGrid | |
CPmeKSpace | |
▶CPmeKSpaceCompute | |
CCudaPmeKSpaceCompute | |
CPmeParticle | |
CPmePencilInitMsgData | |
CPmeRealSpace | |
▶CPmeRealSpaceCompute | |
CCudaPmeRealSpaceCompute | |
▶CPmeTranspose | |
CCudaPmeTranspose | |
CpntChrgDist | |
CPointer | |
Cposition_index | |
CPressureProfileReduction | |
Cmsm::PriorityQueue< T > | |
CProxyElem | |
CProxyListInfo | |
CProxyTree | |
CproxyTreeNode | |
CProxyUsage | |
CProxyUsageKey | |
CQMAtomData | |
CQMForce | |
CqmSolvData | |
CRandom | |
CHomePatch::RattleList | |
CRattleParam | |
▶CRebalancer | |
CAlg7 | |
CAlgNbor | |
CAlgRecBisection | |
CRefineOnly | |
▶CRefineTorusLB | |
CTorusLB | |
CRecBisection | |
CReductionSet | |
CReductionSetData | |
CReductionValue | |
CrefSelStr | |
CReplicaDcdAckMsg | |
CReplicaDcdDataMsg | |
CReplicaDcdInitMsg | |
CRequireReduction | |
CResidueLookupElem | |
▶CResizeArray< Elem > | |
▶CSortableResizeArray< Elem > | |
▶CSortedArray< Elem > | |
CUniqueSortedArray< Elem > | |
CResizeArray< __sort_entry > | |
CResizeArray< AngleElem > | |
CResizeArray< AnisoElem > | |
CResizeArray< AtomID > | |
CResizeArray< BigReal > | |
CResizeArray< bond > | |
CResizeArray< BondElem > | |
CResizeArray< char *> | |
CResizeArray< char > | |
CResizeArray< ClusterCoorMsg * > | |
CResizeArray< ClusterSizeMsg * > | |
CResizeArray< CollectionMaster::CollectVectorInstance *> | |
CResizeArray< CollectionMaster::CollectVectorInstanceDcdSelection *> | |
CResizeArray< CollectionMgr::CollectVectorInstance *> | |
CResizeArray< CollectProxyVectorInstance *> | |
CResizeArray< CompAtom > | |
CResizeArray< CompAtomExt > | |
▶CResizeArray< Compute * > | |
▶CSortableResizeArray< Compute * > | |
CSortedArray< Compute * > | |
CResizeArray< ComputeGlobalResultsMsg *> | |
CResizeArray< ComputeID *> | |
CResizeArray< ComputeMap::ComputeData > | |
CResizeArray< ComputePme *> | |
▶CResizeArray< ComputeQMPntChrg > | |
▶CSortableResizeArray< ComputeQMPntChrg > | |
CSortedArray< ComputeQMPntChrg > | |
CResizeArray< const char *> | |
CResizeArray< const GenericAngle *> | |
CResizeArray< const GenericAtom *> | |
CResizeArray< const GenericBond *> | |
CResizeArray< const GenericDihedral *> | |
CResizeArray< const MolInst *> | |
CResizeArray< const Real *> | |
CResizeArray< CrosstermElem > | |
CResizeArray< CudaAtom > | |
CResizeArray< DihedralElem > | |
CResizeArray< ExclElem > | |
CResizeArray< float > | |
CResizeArray< FloatVector > | |
CResizeArray< Force > | |
CResizeArray< FullAtom > | |
CResizeArray< GBReal > | |
CResizeArray< GenericMol *> | |
CResizeArray< GlobalMaster *> | |
CResizeArray< GroGaussPair > | |
CResizeArray< GroLJPair > | |
CResizeArray< GromacsPairElem > | |
▶CResizeArray< HomePatchElem > | |
▶CSortableResizeArray< HomePatchElem > | |
CSortedArray< HomePatchElem > | |
▶CResizeArray< HydrogenGroupID > | |
CSortableResizeArray< HydrogenGroupID > | |
▶CResizeArray< idIndxStr > | |
▶CSortableResizeArray< idIndxStr > | |
CSortedArray< idIndxStr > | |
CResizeArray< ImproperElem > | |
CResizeArray< InputAtom > | |
▶CResizeArray< int > | |
▶CSortableResizeArray< int > | |
CSortedArray< int > | |
CResizeArray< int32 *> | |
CResizeArray< intpair > | |
CResizeArray< Lattice > | |
CResizeArray< LSSDataMap > | |
CResizeArray< LSSRefMap > | |
▶CResizeArray< LSSSubsDat > | |
▶CSortableResizeArray< LSSSubsDat > | |
CSortedArray< LSSSubsDat > | |
▶CResizeArray< meMMQMGrp > | |
▶CSortableResizeArray< meMMQMGrp > | |
CSortedArray< meMMQMGrp > | |
CResizeArray< MigrationElem > | |
▶CResizeArray< MovePatch > | |
▶CSortableResizeArray< MovePatch > | |
CSortedArray< MovePatch > | |
CResizeArray< NodeID > | |
▶CResizeArray< PatchElem > | |
▶CSortableResizeArray< PatchElem > | |
▶CSortedArray< PatchElem > | |
CUniqueSortedArray< PatchElem > | |
CResizeArray< PatchID > | |
CResizeArray< plint > | |
CResizeArray< PmeGridMsg *> | |
CResizeArray< PmeParticle > | |
CResizeArray< Position > | |
CResizeArray< Real > | |
CResizeArray< ResizeArray > | |
CResizeArray< SortedArray< int > > | |
CResizeArray< T > | |
CResizeArray< TholeElem > | |
CResizeArray< Type *> | |
CResizeArray< unsigned char > | |
CResizeArray< Vector > | |
CResizeArray< void *> | |
CResizeArrayIter< T > | |
CResizeArrayIter< PatchElem > | |
CResizeArrayPrimIter< T > | |
CResizeArrayRaw< Elem > | |
CResizeArrayRaw< __sort_entry > | |
CResizeArrayRaw< AngleElem > | |
CResizeArrayRaw< AnisoElem > | |
CResizeArrayRaw< AtomID > | |
CResizeArrayRaw< BigReal > | |
CResizeArrayRaw< bond > | |
CResizeArrayRaw< BondElem > | |
CResizeArrayRaw< char *> | |
CResizeArrayRaw< char > | |
CResizeArrayRaw< ClusterCoorMsg *> | |
CResizeArrayRaw< ClusterSizeMsg *> | |
CResizeArrayRaw< CollectionMaster::CollectVectorInstance *> | |
CResizeArrayRaw< CollectionMaster::CollectVectorInstanceDcdSelection *> | |
CResizeArrayRaw< CollectionMgr::CollectVectorInstance *> | |
CResizeArrayRaw< CollectProxyVectorInstance *> | |
CResizeArrayRaw< CompAtom > | |
CResizeArrayRaw< CompAtomExt > | |
CResizeArrayRaw< Compute *> | |
CResizeArrayRaw< ComputeGlobalResultsMsg *> | |
CResizeArrayRaw< ComputeID *> | |
CResizeArrayRaw< ComputeMap::ComputeData > | |
CResizeArrayRaw< ComputePme *> | |
CResizeArrayRaw< ComputeQMPntChrg > | |
CResizeArrayRaw< const char *> | |
CResizeArrayRaw< const GenericAngle *> | |
CResizeArrayRaw< const GenericAtom *> | |
CResizeArrayRaw< const GenericBond *> | |
CResizeArrayRaw< const GenericDihedral *> | |
CResizeArrayRaw< const MolInst *> | |
CResizeArrayRaw< const Real *> | |
CResizeArrayRaw< CrosstermElem > | |
CResizeArrayRaw< CudaAtom > | |
CResizeArrayRaw< DihedralElem > | |
CResizeArrayRaw< ExclElem > | |
CResizeArrayRaw< float > | |
CResizeArrayRaw< FloatVector > | |
CResizeArrayRaw< Force > | |
CResizeArrayRaw< FullAtom > | |
CResizeArrayRaw< GBReal > | |
CResizeArrayRaw< GenericMol *> | |
CResizeArrayRaw< GlobalMaster *> | |
CResizeArrayRaw< GroGaussPair > | |
CResizeArrayRaw< GroLJPair > | |
CResizeArrayRaw< GromacsPairElem > | |
CResizeArrayRaw< HomePatchElem > | |
CResizeArrayRaw< HydrogenGroupID > | |
CResizeArrayRaw< idIndxStr > | |
CResizeArrayRaw< ImproperElem > | |
CResizeArrayRaw< InputAtom > | |
CResizeArrayRaw< int > | |
CResizeArrayRaw< int32 *> | |
CResizeArrayRaw< intpair > | |
CResizeArrayRaw< Lattice > | |
CResizeArrayRaw< LSSDataMap > | |
CResizeArrayRaw< LSSRefMap > | |
CResizeArrayRaw< LSSSubsDat > | |
CResizeArrayRaw< meMMQMGrp > | |
CResizeArrayRaw< MigrationElem > | |
CResizeArrayRaw< MovePatch > | |
CResizeArrayRaw< NodeID > | |
CResizeArrayRaw< PatchElem > | |
CResizeArrayRaw< PatchID > | |
CResizeArrayRaw< plint > | |
CResizeArrayRaw< PmeGridMsg *> | |
CResizeArrayRaw< PmeParticle > | |
CResizeArrayRaw< Position > | |
CResizeArrayRaw< Real > | |
CResizeArrayRaw< ResizeArray > | |
CResizeArrayRaw< SortedArray< int > > | |
CResizeArrayRaw< T > | |
CResizeArrayRaw< TholeElem > | |
CResizeArrayRaw< Type *> | |
CResizeArrayRaw< unsigned char > | |
CResizeArrayRaw< Vector > | |
CResizeArrayRaw< void *> | |
CResults | |
CRunningAverage | |
CScriptTcl | |
Cseg_resid | |
CSequencer | |
CSettleParameters | |
COutputAtomRecord::shortVals | |
CSimParameters | |
CScriptTcl::SimpleBroadcastObjectWrapper | |
▶Csortop_base | |
Csortop_x | |
Csortop_y | |
Csortop_z | |
Csortop_bit_reversed | |
Csortop_SOA | |
CsparseMatrix | |
CStreamMessage | |
▶Cstringbuf | |
CCkPrintf_stringbuf | |
CStringList | |
CSubmitReduction | |
Ctable_pair_params | |
CLJTable::TableEntry | |
CTaggedMsg | |
CTensor | |
Cthole | |
CTholeElem | |
CTileExcl | |
CTileList | |
CTileListStat | |
CTileListVirialEnergy | |
CTopoManagerWrapper | |
CTransform | |
CTransposeBatch< T > | |
CTransposeBatch< float2 > | |
CTupleCounts | |
CTupleData | |
CTupleDataStage | |
CTupleDataStagePeer | |
CTupleIntArrays | |
CTupleIntArraysContiguous | |
CTupleIntArraysPeer | |
CTuplePatchElem | |
CTupleSignature | |
CTupleSizes | |
CTupleStrider< NumStrings > | |
CTupleString< NumStrings > | |
CTupleString< 4 > | |
CTupleStringHash< NumStrings > | |
CTwoLevelParam< NumStrings, ParamValue > | |
CTwoLevelParam< 1, vdw_val > | |
CTwoLevelParam< 2, BondValue > | |
CTwoLevelParam< 3, AngleValue > | |
CTwoLevelParam< 4, DihedralValue > | |
CTwoLevelParam< 4, ImproperValue > | |
CTwoLevelParam< 8, CrosstermValue > | |
CUniqueSet< Elem > | |
CUniqueSet< BOID > | |
CUniqueSet< BroadcastClientElem > | |
CUniqueSet< ClusterCoorElem > | |
CUniqueSet< ClusterElem > | |
CUniqueSet< Exclusion > | |
CUniqueSet< ProxyElem > | |
CUniqueSet< T > | |
CUniqueSet< TaggedMsg > | |
CUniqueSet< TuplePatchElem > | |
CUniqueSetIter< T > | |
CUniqueSetRaw< Elem > | |
CUniqueSetRaw< BOID > | |
CUniqueSetRaw< BroadcastClientElem > | |
CUniqueSetRaw< ClusterCoorElem > | |
CUniqueSetRaw< ClusterElem > | |
CUniqueSetRaw< Exclusion > | |
CUniqueSetRaw< ProxyElem > | |
CUniqueSetRaw< T > | |
CUniqueSetRaw< TaggedMsg > | |
CUniqueSetRaw< TuplePatchElem > | |
CvalidRattle | |
Cvdw_pair_params | |
Cvdw_params | |
Cvdw_val | |
CVDWTable | |
Cvect | |
▶CVector | |
CAlignVector | |
CzVector | |
CVirialEnergy | |
Cvmdforce | |
Cwkf_timer | |
Cwkfmsgtimer | |
CWorkIndex | |
CXXH32_canonical_t | |
CXXH64_canonical_t | |
▶Cstring | |
CHashString | |
▶CT | |
CPmePencil< T > | |